Loading
PDBj
MenuPDBj@FacebookPDBj@X(formerly Twitter)PDBj@BlueSkyPDBj@YouTubewwPDB FoundationwwPDBDonate
RCSB PDBPDBeBMRBAdv. SearchSearch help

3DVG
DownloadVisualize
BU of 3dvg by Molmil
Crystal structure of K63-specific fab Apu.3A8 bound to K63-linked di-ubiquitin
Descriptor: Human IgG1 fab fragment heavy chain, Human IgG1 fab fragment light chain, Ubiquitin, ...
Authors:Hymowitz, S.G.
Deposit date:2008-07-18
Release date:2008-09-30
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Ubiquitin chain editing revealed by polyubiquitin linkage-specific antibodies.
Cell(Cambridge,Mass.), 134, 2008
3DVN
DownloadVisualize
BU of 3dvn by Molmil
Crystal structure of K63-specific fab Apu2.16 bound to K63-linked di-ubiquitin
Descriptor: Human IgG1 fab fragment heavy chain, Human IgG1 fab fragment light chain, Ubiquitin, ...
Authors:Hymowitz, S.G.
Deposit date:2008-07-18
Release date:2008-09-30
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Ubiquitin chain editing revealed by polyubiquitin linkage-specific antibodies.
Cell(Cambridge,Mass.), 134, 2008
1GHB
DownloadVisualize
BU of 1ghb by Molmil
A SECOND ACTIVE SITE IN CHYMOTRYPSIN? THE X-RAY CRYSTAL STRUCTURE OF N-ACETYL-D-TRYPTOPHAN BOUND TO GAMMA-CHYMOTRYPSIN
Descriptor: ACETYL GROUP, GAMMA-CHYMOTRYPSIN, HEXANE, ...
Authors:Yennawar, H.P, Yennawar, N.H, Farber, G.K.
Deposit date:1994-04-06
Release date:1994-06-22
Last modified:2024-06-05
Method:X-RAY DIFFRACTION (2 Å)
Cite:A STRUCTURAL EXPLANATION FOR ENZYME MEMORY IN NONAQUEOUS SOLVENTS.
J.Am.Chem.Soc., 117, 1995
1EUF
DownloadVisualize
BU of 1euf by Molmil
BOVINE DUODENASE(NEW SERINE PROTEASE), CRYSTAL STRUCTURE
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, DUODENASE, PHOSPHATE ION
Authors:Pletnev, V.Z, Zamolodchikova, T.S, Pangborn, W.A, Duax, W.L.
Deposit date:2000-04-14
Release date:2001-04-14
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of bovine duodenase, a serine protease, with dual trypsin and chymotrypsin-like specificities.
Proteins, 41, 2000
1EST
DownloadVisualize
BU of 1est by Molmil
THE ATOMIC STRUCTURE OF CRYSTALLINE PORCINE PANCREATIC ELASTASE AT 2.5 ANGSTROMS RESOLUTION. COMPARISONS WITH THE STRUCTURE OF ALPHA-CHYMOTRYPSIN
Descriptor: PARA-TOLUENE SULFONATE, PORCINE PANCREATIC ELASTASE, SULFATE ION
Authors:Sawyer, L, Shotton, D.M, Watson, H.C.
Deposit date:1976-05-17
Release date:1976-05-27
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:The atomic structure of crystalline porcine pancreatic elastase at 2.5 A resolution: comparisons with the structure of alpha-chymotrypsin.
J.Mol.Biol., 118, 1978
6TCX
DownloadVisualize
BU of 6tcx by Molmil
Papain bound to a natural cysteine protease inhibitor from Streptomyces mobaraensis
Descriptor: (2~{R})-2-[[(1~{S})-1-[(6~{S})-2-azanyl-1,4,5,6-tetrahydropyrimidin-6-yl]-2-[[(2~{S})-3-methyl-1-oxidanylidene-1-[[(2~{S})-1-oxidanyl-3-phenyl-propan-2-yl]amino]butan-2-yl]amino]-2-oxidanylidene-ethyl]carbamoylamino]-3-(4-hydroxyphenyl)propanoic acid, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Papain
Authors:Kraemer, A, Juettner, N.E, Fuchsbauer, H.-L, Edwards, A.M, Arrowsmith, C.H, Bountra, C, Knapp, S, Structural Genomics Consortium (SGC)
Deposit date:2019-11-06
Release date:2019-12-04
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Decoding the Papain Inhibitor from Streptomyces mobaraensis as Being Hydroxylated Chymostatin Derivatives: Purification, Structure Analysis, and Putative Biosynthetic Pathway.
J.Nat.Prod., 83, 2020
6TC2
DownloadVisualize
BU of 6tc2 by Molmil
Monoclinic human insulin in complex with p-coumaric acid
Descriptor: 4'-HYDROXYCINNAMIC ACID, Insulin, PHOSPHATE ION, ...
Authors:Triandafillidis, D.-P, Parthenios, N, Spiliopoulou, M, Valmas, A, Kosinas, C, Gozzo, F, Reinle-Schmitt, M, Beckers, D, Degen, T, Pop, M, Fitch, A, Wollenhaupt, J, Weiss, M.S, Karavassili, F, Margiolaki, I.
Deposit date:2019-11-04
Release date:2020-11-11
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.36 Å)
Cite:Insulin polymorphism induced by two polyphenols: new crystal forms and advances in macromolecular powder diffraction.
Acta Crystallogr D Struct Biol, 76, 2020
5XXI
DownloadVisualize
BU of 5xxi by Molmil
Crystal structure of CYP2C9 in complex with multiple losartan molecules
Descriptor: Cytochrome P450 2C9, POTASSIUM ION, PROTOPORPHYRIN IX CONTAINING FE, ...
Authors:Maekawa, K, Adachi, M, Shah, M.B.
Deposit date:2017-07-04
Release date:2017-10-25
Last modified:2023-11-22
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural Basis of Single-Nucleotide Polymorphisms in Cytochrome P450 2C9
Biochemistry, 56, 2017
1TAW
DownloadVisualize
BU of 1taw by Molmil
BOVINE TRYPSIN COMPLEXED TO APPI
Descriptor: CALCIUM ION, PROTEASE INHIBITOR DOMAIN OF ALZHEIMER'S AMYLOID BETA-PROTEIN PRECURSOR, TRYPSIN
Authors:Hynes, T.R, Kossiakoff, A.A.
Deposit date:1996-12-19
Release date:1997-06-24
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structures of bovine chymotrypsin and trypsin complexed to the inhibitor domain of Alzheimer's amyloid beta-protein precursor (APPI) and basic pancreatic trypsin inhibitor (BPTI): engineering of inhibitors with altered specificities.
Protein Sci., 6, 1997
6KWK
DownloadVisualize
BU of 6kwk by Molmil
Crystal structure of pSLA-1*0401 complex with FMDV-derived epitope MTAHITVPY
Descriptor: Beta-2-microglobulin, MHC class I antigen, peptide
Authors:Wei, X.H, Wang, S, Zhang, N.Z, Xia, C.
Deposit date:2019-09-07
Release date:2020-09-09
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Peptidomes and Structures Illustrate Two Distinguishing Mechanisms of Alternating the Peptide Plasticity Caused by Swine MHC Class I Micropolymorphism.
Front Immunol, 12, 2021
2LSB
DownloadVisualize
BU of 2lsb by Molmil
Solution-state NMR structure of the human prion protein
Descriptor: Major prion protein
Authors:Biljan, I, Ilc, G, Giancin, G, Zhukov, I, Plavec, J, Legname, G.
Deposit date:2012-04-26
Release date:2012-06-27
Last modified:2024-11-20
Method:SOLUTION NMR
Cite:Structural basis for the protective effect of the human prion protein carrying the dominant-negative E219K polymorphism.
Biochem.J., 446, 2012
4W5L
DownloadVisualize
BU of 4w5l by Molmil
Crystal structure of a prp peptide
Descriptor: PrP peptide
Authors:Yu, L, Lee, S.-J, Yee, V.
Deposit date:2014-08-18
Release date:2015-05-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1 Å)
Cite:Crystal Structures of Polymorphic Prion Protein beta 1 Peptides Reveal Variable Steric Zipper Conformations.
Biochemistry, 54, 2015
4WBV
DownloadVisualize
BU of 4wbv by Molmil
Crystal structure of a prion peptide
Descriptor: PrP peptide
Authors:Yu, L, Lee, S.-J, Yee, V.
Deposit date:2014-09-03
Release date:2015-05-27
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.4 Å)
Cite:Crystal Structures of Polymorphic Prion Protein beta 1 Peptides Reveal Variable Steric Zipper Conformations.
Biochemistry, 54, 2015
1DLE
DownloadVisualize
BU of 1dle by Molmil
FACTOR B SERINE PROTEASE DOMAIN
Descriptor: COMPLEMENT FACTOR B
Authors:Jing, H, Xu, Y, Carson, M, Moore, D, Macon, K.J, Volanakis, J.E, Narayana, S.V.
Deposit date:1999-12-09
Release date:2000-12-13
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:New structural motifs on the chymotrypsin fold and their potential roles in complement factor B.
EMBO J., 19, 2000
8IZZ
DownloadVisualize
BU of 8izz by Molmil
Cryo-EM structure of DIP-2I8I polymorph 2
Descriptor: GLY-PHI-GLY-ASN-GLY-ASN-GLY-PHI-GLY
Authors:Li, D.N, Ma, Y.Y, Li, D, Dai, B, Liu, C.
Deposit date:2023-04-09
Release date:2024-04-10
Method:ELECTRON MICROSCOPY (3.75 Å)
Cite:Cryo-EM structure of DIP-2I8I fibril polymorph 2
To Be Published
1UGN
DownloadVisualize
BU of 1ugn by Molmil
Crystal structure of LIR1.02, one of the alleles of LIR1
Descriptor: Leukocyte immunoglobulin-like receptor 1
Authors:Shiroishi, M, Rasubala, L, Kuroki, K, Amano, K, Tsuchiya, N, Tokunaga, K, Kohda, D, Maenaka, K.
Deposit date:2003-06-17
Release date:2004-08-10
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Extensive polymorphisms of LILRB1 (ILT2, LIR1) and their association with HLA-DRB1 shared epitope negative rheumatoid arthritis.
Hum.Mol.Genet., 14, 2005
7NLJ
DownloadVisualize
BU of 7nlj by Molmil
Complex of rice blast (Magnaporthe oryzae) effector protein APikL2A with host target sHMA25 from Setaria italica
Descriptor: 1,2-ETHANEDIOL, APikL2A, sHMA25
Authors:Bentham, A.R, Banfield, M.J.
Deposit date:2021-02-22
Release date:2021-03-24
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:A single amino acid polymorphism in a conserved effector of the multihost blast fungus pathogen expands host-target binding spectrum.
Plos Pathog., 17, 2021
7NMM
DownloadVisualize
BU of 7nmm by Molmil
Complex of rice blast (Magnaporthe oryzae) effector protein APikL2F with the host target sHMA94 from Setaria italica
Descriptor: 1,2-ETHANEDIOL, APikL2F, CHLORIDE ION, ...
Authors:Bentham, A.R, Banfield, M.J.
Deposit date:2021-02-23
Release date:2021-03-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:A single amino acid polymorphism in a conserved effector of the multihost blast fungus pathogen expands host-target binding spectrum.
Plos Pathog., 17, 2021
2JGW
DownloadVisualize
BU of 2jgw by Molmil
Structure of CCP module 7 of complement factor H - The AMD at risk varient (402H)
Descriptor: COMPLEMENT FACTOR H
Authors:Herbert, A.P, Deakin, J.A, Schmidt, C.Q, Blaum, B.S, Egan, C, Ferreira, V.P, Pangburn, M.K, Lyon, M, Uhrin, D, Barlow, P.N.
Deposit date:2007-02-16
Release date:2007-03-20
Last modified:2024-10-16
Method:SOLUTION NMR
Cite:Structure shows that a glycosaminoglycan and protein recognition site in factor H is perturbed by age-related macular degeneration-linked single nucleotide polymorphism.
J. Biol. Chem., 282, 2007
2JGX
DownloadVisualize
BU of 2jgx by Molmil
Structure of CCP module 7 of complement factor H - The AMD Not at risk varient (402Y)
Descriptor: COMPLEMENT FACTOR H
Authors:Herbert, A.P, Deakin, J.A, Schmidt, C.Q, Blaum, B.S, Egan, C, Ferreira, V.P, Pangburn, M.K, Lyon, M, Uhrin, D, Barlow, P.N.
Deposit date:2007-02-16
Release date:2007-03-20
Last modified:2024-10-09
Method:SOLUTION NMR
Cite:Structure shows that a glycosaminoglycan and protein recognition site in factor H is perturbed by age-related macular degeneration-linked single nucleotide polymorphism.
J. Biol. Chem., 282, 2007
6Y13
DownloadVisualize
BU of 6y13 by Molmil
Bicyclic stapled peptide bp70 at 1.1 Angstrom resolution
Descriptor: bp70
Authors:Baeriswyl, S, Stocker, A, Reymond, J.-L.
Deposit date:2020-02-11
Release date:2021-02-17
Last modified:2023-02-01
Method:X-RAY DIFFRACTION (1.112 Å)
Cite:A mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography.
Rsc Chem Biol, 2, 2021
6Y0U
DownloadVisualize
BU of 6y0u by Molmil
Fucosylated Bicyclic peptide bp71 bound to the fucose binding lectin LecB PA-IIL from Pseudomonas aeruginosa at 1.5 Angstrom resolution
Descriptor: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, CALCIUM ION, Fucose-binding lectin, ...
Authors:Baeriswyl, S, Stocker, A, Reymond, J.-L.
Deposit date:2020-02-10
Release date:2021-02-24
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.489 Å)
Cite:A mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography.
Rsc Chem Biol, 2, 2021
6Y0V
DownloadVisualize
BU of 6y0v by Molmil
Fucosylated bicyclic peptide bp71 bound to the fucose binding lectin LecB PA-IIL from Pseudomonas aeruginosa at 1.7 Angstrom resolution
Descriptor: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, CALCIUM ION, Fucose-binding lectin, ...
Authors:Baeriswyl, S, Stocker, A, Reymond, J.-L.
Deposit date:2020-02-10
Release date:2021-02-24
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:A mixed chirality alpha-helix in a stapled bicyclic and a linear antimicrobial peptide revealed by X-ray crystallography.
Rsc Chem Biol, 2, 2021
8ANO
DownloadVisualize
BU of 8ano by Molmil
Fucosylated mixed-chirality linear peptide FHP8 bound to the fucose binding lectin LecB PA-IIL from Pseudomonas aeruginosa at 1.3 Angstrom resolution.
Descriptor: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, CALCIUM ION, Fucose-binding lectin PA-IIL, ...
Authors:Personne, H, Stocker, A, Reymond, J.-L.
Deposit date:2022-08-05
Release date:2023-05-31
Last modified:2024-11-20
Method:X-RAY DIFFRACTION (1.29 Å)
Cite:To Fold or Not to Fold: Diastereomeric Optimization of an alpha-Helical Antimicrobial Peptide.
J.Med.Chem., 66, 2023
8AOO
DownloadVisualize
BU of 8aoo by Molmil
Fucosylated mixed-chirality linear peptide FHP31 bound to the fucose binding lectin LecB PA-IIL from Pseudomonas aeruginosa at 1.2 Angstrom resolution.
Descriptor: 3,7-anhydro-2,8-dideoxy-L-glycero-D-gluco-octonic acid, CALCIUM ION, Fucose-binding lectin PA-IIL, ...
Authors:Personne, H, Stocker, A, Reymond, J.-L.
Deposit date:2022-08-08
Release date:2023-05-31
Last modified:2024-10-23
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:To Fold or Not to Fold: Diastereomeric Optimization of an alpha-Helical Antimicrobial Peptide.
J.Med.Chem., 66, 2023

238582

数据于2025-07-09公开中

PDB statisticsPDBj update infoContact PDBjnumon