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7P5V
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BU of 7p5v by Molmil
Structure of homomeric LRRC8A Volume-Regulated Anion Channel in complex with synthetic nanobody Sb1
Descriptor: Synthetic nanobody Sb1, Volume-regulated anion channel subunit LRRC8A
Authors:Deneka, D, Rutz, S, Sawicka, M.
Deposit date:2021-07-15
Release date:2021-09-15
Last modified:2021-10-13
Method:ELECTRON MICROSCOPY (3.06 Å)
Cite:Allosteric modulation of LRRC8 channels by targeting their cytoplasmic domains.
Nat Commun, 12, 2021
7P66
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BU of 7p66 by Molmil
Globular glial tauopathy type 1 tau filament
Descriptor: Microtubule-associated protein tau
Authors:Shi, Y, Zhang, W, Yang, Y, Murzin, A.G, Falcon, B, Kotecha, A, van Beers, M, Tarutani, A, Kametani, F, Garringer, H.J, Vidal, R, Hallinan, G.I, Lashley, T, Saito, Y, Murayama, S, Yoshida, M, Tanaka, H, Kakita, A, Ikeuchi, T, Robinson, A.C, Mann, D.M.A, Kovacs, G.G, Revesz, T, Ghetti, B, Hasegawa, M, Goedert, M, Scheres, S.H.W.
Deposit date:2021-07-15
Release date:2021-09-15
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Structure-based classification of tauopathies.
Nature, 598, 2021
4LYX
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BU of 4lyx by Molmil
five minutes iron loaded frog M ferritin
Descriptor: CHLORIDE ION, FE (II) ION, Ferritin, ...
Authors:Mangani, S, Di Pisa, F, Pozzi, C, Turano, P, Lalli, D.
Deposit date:2013-07-31
Release date:2014-08-06
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.23 Å)
Cite:Time-lapse anomalous X-ray diffraction shows how Fe(2+) substrate ions move through ferritin protein nanocages to oxidoreductase sites.
Acta Crystallogr.,Sect.D, 71, 2015
7P6B
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BU of 7p6b by Molmil
Limbic-predominant neuronal inclusion body 4R tauopathy type 1b tau filament
Descriptor: Microtubule-associated protein tau
Authors:Shi, Y, Zhang, W, Yang, Y, Murzin, A.G, Falcon, B, Kotecha, A, van Beers, M, Tarutani, A, Kametani, F, Garringer, H.J, Vidal, R, Hallinan, G.I, Lashley, T, Saito, Y, Murayama, S, Yoshida, M, Tanaka, H, Kakita, A, Ikeuchi, T, Robinson, A.C, Mann, D.M.A, Kovacs, G.G, Revesz, T, Ghetti, B, Hasegawa, M, Goedert, M, Scheres, S.H.W.
Deposit date:2021-07-15
Release date:2021-09-15
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Structure-based classification of tauopathies.
Nature, 598, 2021
8TBU
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BU of 8tbu by Molmil
Structure of human erythrocyte pyruvate kinase in complex with an allosteric activator Compound 12
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, 6-[(4-hydroxyphenyl)methyl]-2,4-dimethyl-4,6-dihydro-5H-[1,3]thiazolo[5',4':4,5]pyrrolo[2,3-d]pyridazin-5-one, MANGANESE (II) ION, ...
Authors:Jin, L, Padyana, A.
Deposit date:2023-06-29
Release date:2023-12-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure-Based Design of AG-946, a Pyruvate Kinase Activator.
Chemmedchem, 19, 2024
6F91
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BU of 6f91 by Molmil
Structure of the family GH92 alpha-mannosidase BT3965 from Bacteroides thetaiotaomicron
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
Authors:Thompson, A.J, Spears, R.J, Zhu, Y, Suits, M.D.L, Williams, S.J, Gilbert, H.J, Davies, G.J.
Deposit date:2017-12-13
Release date:2018-05-02
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Bacteroides thetaiotaomicron generates diverse alpha-mannosidase activities through subtle evolution of a distal substrate-binding motif.
Acta Crystallogr D Struct Biol, 74, 2018
8FQ1
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BU of 8fq1 by Molmil
GluA2 flip Q isoform of AMPA receptor in complex with gain-of-function TARP gamma2, with 150mM CaCl2, 330uM CTZ, and 100mM L-glutamate (Open-Ca150)
Descriptor: CALCIUM ION, Glutamate receptor 2, Voltage-dependent calcium channel gamma-2 subunit
Authors:Nakagawa, T.
Deposit date:2023-01-05
Release date:2024-02-28
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (5.59 Å)
Cite:The open gate of the AMPA receptor forms a Ca 2+ binding site critical in regulating ion transport.
Nat.Struct.Mol.Biol., 31, 2024
7P6C
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BU of 7p6c by Molmil
Limbic-predominant neuronal inclusion body 4R tauopathy type 2 tau filament
Descriptor: Microtubule-associated protein tau
Authors:Shi, Y, Zhang, W, Yang, Y, Murzin, A.G, Falcon, B, Kotecha, A, van Beers, M, Tarutani, A, Kametani, F, Garringer, H.J, Vidal, R, Hallinan, G.I, Lashley, T, Saito, Y, Murayama, S, Yoshida, M, Tanaka, H, Kakita, A, Ikeuchi, T, Robinson, A.C, Mann, D.M.A, Kovacs, G.G, Revesz, T, Ghetti, B, Hasegawa, M, Goedert, M, Scheres, S.H.W.
Deposit date:2021-07-15
Release date:2021-09-15
Last modified:2024-07-17
Method:ELECTRON MICROSCOPY (2.5 Å)
Cite:Structure-based classification of tauopathies.
Nature, 598, 2021
8TBS
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BU of 8tbs by Molmil
Structure of human erythrocyte pyruvate kinase in complex with an allosteric activator AG-946
Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, 6-[(6-aminopyridin-2-yl)methyl]-4-methyl-2-[(1H-pyrazol-3-yl)methyl]-4,6-dihydro-5H-[1,3]thiazolo[5',4':4,5]pyrrolo[2,3-d]pyridazin-5-one, MANGANESE (II) ION, ...
Authors:Jin, L, Padyana, A.
Deposit date:2023-06-29
Release date:2023-12-27
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Structure-Based Design of AG-946, a Pyruvate Kinase Activator.
Chemmedchem, 19, 2024
8FAI
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BU of 8fai by Molmil
Cryo-EM structure of the Agrobacterium T-pilus
Descriptor: (7Z,19R,22S,25R)-22,25,26-trihydroxy-16,22-dioxo-17,21,23-trioxa-22lambda~5~-phosphahexacos-7-en-19-yl (9Z)-octadec-9-enoate, Protein virB2
Authors:Kreida, S, Narita, A, Johnson, M.D, Tocheva, E.I, Das, A, Jensen, G.J, Ghosal, D.
Deposit date:2022-11-27
Release date:2024-03-13
Method:ELECTRON MICROSCOPY (3 Å)
Cite:Cryo-EM structure of the Agrobacterium tumefaciens T4SS-associated T-pilus reveals stoichiometric protein-phospholipid assembly.
Structure, 31, 2023
7P60
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BU of 7p60 by Molmil
Structure of homomeric LRRC8A Volume-Regulated Anion Channel in complex with synthetic nanobody Sb4 at 1:0.5 ratio
Descriptor: Volume-regulated anion channel subunit LRRC8A, synthetic nanobody Sb4
Authors:Deneka, D, Rutz, S, Sawicka, M.
Deposit date:2021-07-15
Release date:2021-09-15
Last modified:2021-10-13
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Allosteric modulation of LRRC8 channels by targeting their cytoplasmic domains.
Nat Commun, 12, 2021
8FRE
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BU of 8fre by Molmil
Designed loop protein RBL4
Descriptor: 1,2-ETHANEDIOL, RBL4
Authors:Jude, K.M, Jiang, H, Baker, D, Garcia, K.C.
Deposit date:2023-01-06
Release date:2024-04-17
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:De novo design of buttressed loops for sculpting protein functions.
Nat.Chem.Biol., 20, 2024
4LPM
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BU of 4lpm by Molmil
Frog M-ferritin with magnesium, D127E mutant
Descriptor: CHLORIDE ION, Ferritin, middle subunit, ...
Authors:Torres, R, Behera, R, Goulding, C.W, Theil, E.C.
Deposit date:2013-07-16
Release date:2014-07-16
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:D127E ion channel exit modification in ferritin nanocages entraps Fe(II) and impairs its distribution to diiron catalytic centers
To be Published
7PBI
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BU of 7pbi by Molmil
4-ethylphenol oxidase from Gulosibacter chungangensis: isoeugenol complex
Descriptor: FAD-binding oxidoreductase, FLAVIN-ADENINE DINUCLEOTIDE, ISOEUGENOL
Authors:Alvigini, L, Mattevi, A.
Deposit date:2021-08-02
Release date:2021-09-29
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Discovery, Biocatalytic Exploration and Structural Analysis of a 4-Ethylphenol Oxidase from Gulosibacter chungangensis.
Chembiochem, 22, 2021
6FE2
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BU of 6fe2 by Molmil
Three dimensional structure of human carbonic anhydrase IX
Descriptor: Carbonic anhydrase 9, ZINC ION
Authors:Leitans, J, Tars, K.
Deposit date:2017-12-28
Release date:2018-07-04
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Novel fluorinated carbonic anhydrase IX inhibitors reduce hypoxia-induced acidification and clonogenic survival of cancer cells.
Oncotarget, 9, 2018
8FRF
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BU of 8frf by Molmil
Homodimeric designed loop protein RBL7_C2_3
Descriptor: MALONATE ION, RBL7_C2_3
Authors:Jude, K.M, Jiang, H, Baker, D, Garcia, K.C.
Deposit date:2023-01-06
Release date:2024-04-17
Last modified:2024-08-07
Method:X-RAY DIFFRACTION (2.99 Å)
Cite:De novo design of buttressed loops for sculpting protein functions.
Nat.Chem.Biol., 20, 2024
6FF0
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BU of 6ff0 by Molmil
Ryegrass mottle virus serine protease domain fused with VPg domain
Descriptor: Serine protease domain fused with VPg domain
Authors:Kalnins, G.
Deposit date:2018-01-03
Release date:2019-04-17
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:VPg Impact on Ryegrass Mottle Virus Serine-like 3C Protease Proteolysis and Structure.
Int J Mol Sci, 24, 2023
7OOI
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BU of 7ooi by Molmil
Anti-EphA1 JD1 VH domain
Descriptor: JD1 VH domain, SULFATE ION
Authors:Ereno-Orbea, J, Nilvebrant, J, Sidhu, S, Julien, J.P.
Deposit date:2021-05-27
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:Systematic Engineering of Optimized Autonomous Heavy-Chain Variable Domains.
J.Mol.Biol., 433, 2021
8TAF
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BU of 8taf by Molmil
Autographa californica multiple nucleopolyhedrovirus VP39
Descriptor: Major viral capsid protein, ZINC ION
Authors:Benning, F.M.C, Chao, L.H.
Deposit date:2023-06-27
Release date:2024-01-10
Last modified:2024-05-01
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Helical reconstruction of VP39 reveals principles for baculovirus nucleocapsid assembly.
Nat Commun, 15, 2024
6FFL
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BU of 6ffl by Molmil
Maltose/maltodextrin-binding domain MalE from Bdellovibrio bacteriovorus bound to maltotriose
Descriptor: Maltose/maltodextrin transport permease homologue, PLATINUM (II) ION, SULFATE ION, ...
Authors:Licht, A, Werther, T, Bommer, M, Neumann, K, Schneider, E.
Deposit date:2018-01-08
Release date:2018-01-24
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.707 Å)
Cite:Structural and functional characterization of a maltose/maltodextrin ABC transporter comprising a single solute binding domain (MalE) fused to the transmembrane subunit MalF.
Res. Microbiol., 170, 2018
8TGP
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BU of 8tgp by Molmil
Crystal structure of SIRT2 with FAM-PEG4-H4K16(myristoyl) peptide
Descriptor: H4K16(myristoyl) peptide, MYRISTIC ACID, NAD-dependent protein deacetylase sirtuin-2, ...
Authors:Nicely, N.I, Weiser, B.P.
Deposit date:2023-07-12
Release date:2024-01-24
Method:X-RAY DIFFRACTION (1.76 Å)
Cite:Effects of Dimerization on the Deacylase Activities of Human SIRT2.
Biochemistry, 62, 2023
7OKB
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BU of 7okb by Molmil
Crystal structure of Pseudomonas aeruginosa LpxA in complex with compound 45
Descriptor: Acyl-[acyl-carrier-protein]--UDP-N-acetylglucosamine O-acyltransferase, CHLORIDE ION, SULFATE ION, ...
Authors:Ryan, M.D, Parkes, A.L, Southey, M, Andersen, O.A, Zahn, M, Barker, J, DeJonge, B.L.M.
Deposit date:2021-05-17
Release date:2021-10-06
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.58 Å)
Cite:Discovery of Novel UDP- N -Acetylglucosamine Acyltransferase (LpxA) Inhibitors with Activity against Pseudomonas aeruginosa .
J.Med.Chem., 64, 2021
8TPE
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BU of 8tpe by Molmil
Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease
Descriptor: N-[(1R)-2-(benzylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-N-(4-tert-butylphenyl)-3-hydroxypropanamide, Non-structural protein 7
Authors:Chua, T.K, Song, Y.
Deposit date:2023-08-04
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.61 Å)
Cite:Design, Synthesis, X-ray Crystallography, and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease.
Acs Infect Dis., 10, 2024
8TPG
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BU of 8tpg by Molmil
Synthesis, X-Ray Crystallographic and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease
Descriptor: (3R)-N-(4-tert-butylphenyl)-N-[(1R)-2-(cyclohexylamino)-2-oxo-1-(pyridin-3-yl)ethyl]-3-hydroxybutanamide, Non-structural protein 7
Authors:Chua, T.K, Song, Y.
Deposit date:2023-08-04
Release date:2024-01-24
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.692 Å)
Cite:Design, Synthesis, X-ray Crystallography, and Biological Activities of Covalent, Non-Peptidic Inhibitors of SARS-CoV-2 Main Protease.
Acs Infect Dis., 10, 2024
4M9P
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BU of 4m9p by Molmil
Crystal structure of the human filamin A Ig-like domains 3-5
Descriptor: Filamin-A
Authors:Seppala, J, Pentikainen, U, Ylanne, J.
Deposit date:2013-08-15
Release date:2014-02-05
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (1.72 Å)
Cite:A Novel Structural Unit in the N-terminal Region of Filamins.
J.Biol.Chem., 289, 2014

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数据于2024-08-21公开中

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