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5W1I
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BU of 5w1i by Molmil
Crystal structure of LbaCas13a (C2c2) bound to mature crRNA (20-nt spacer)
Descriptor: IODIDE ION, LbaCas13a (C2c2), mature crRNA
Authors:Knott, G.J, Doudna, J.A.
Deposit date:2017-06-03
Release date:2017-09-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Guide-bound structures of an RNA-targeting A-cleaving CRISPR-Cas13a enzyme.
Nat. Struct. Mol. Biol., 24, 2017
3EQT
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BU of 3eqt by Molmil
Crystal structure of human LGP2 C-terminal domain in complex with dsRNA
Descriptor: 5'-R(*GP*CP*GP*CP*GP*CP*GP*C)-3', ATP-dependent RNA helicase DHX58, ZINC ION
Authors:Li, P, Li, X.
Deposit date:2008-10-01
Release date:2009-03-10
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:The RIG-I-like Receptor LGP2 Recognizes the Termini of Double-stranded RNA
J.Biol.Chem., 284, 2009
5TDK
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BU of 5tdk by Molmil
RNA decamer duplex with eight 2'-5'-linkages
Descriptor: RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3'), STRONTIUM ION
Authors:Luo, Z, Sheng, J.
Deposit date:2016-09-19
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.43 Å)
Cite:Structural insights into RNA duplexes with multiple 2 -5 -linkages.
Nucleic Acids Res., 45, 2017
4OOW
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BU of 4oow by Molmil
HCV NS5B polymerase with a fragment of quercetagetin
Descriptor: CATECHOL, RNA-directed RNA polymerase
Authors:Guichou, J.F, Ahmed-Belkacem, A, Rozenn, B, Nazim, N, Hernandez, E, Pallier, C, Pawlotsky, J.M.
Deposit date:2014-02-04
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Inhibition of RNA binding to hepatitis C virus RNA-dependent RNA polymerase: a new mechanism for antiviral intervention.
Nucleic Acids Res., 42, 2014
5VJ9
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BU of 5vj9 by Molmil
Guanidine-II riboswitch P2 hairpin dimer from Pseudomonas aeruginosa
Descriptor: GUANIDINE, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Reiss, C.W, Strobel, S.A.
Deposit date:2017-04-19
Release date:2017-06-28
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.57 Å)
Cite:Structural basis for ligand binding to the guanidine-II riboswitch.
RNA, 23, 2017
5TDJ
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BU of 5tdj by Molmil
RNA decamer duplex with four 2'-5'-linkages
Descriptor: RNA (5'-R(*CP*CP*GP*GP*CP*GP*CP*CP*GP*G)-3'), STRONTIUM ION
Authors:Luo, Z, Sheng, J.
Deposit date:2016-09-19
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural insights into RNA duplexes with multiple 2 -5 -linkages.
Nucleic Acids Res., 45, 2017
8ITS
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BU of 8its by Molmil
Crystal structure of DUF-3268 k-junction
Descriptor: MAGNESIUM ION, RNA (46-MER)
Authors:Li, M, Lilley, D.M.J, Huang, L.
Deposit date:2023-03-22
Release date:2024-03-27
Last modified:2025-04-09
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Structure and ion-dependent folding of k-junctions.
Rna, 29, 2023
3OTD
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BU of 3otd by Molmil
Crystal structure of human tRNAHis guanylyltransferase (Thg1)- NaI derivative
Descriptor: IODIDE ION, tRNA(His) guanylyltransferase
Authors:Hyde, S.J, Eckenroth, B.E, Doublie, S.
Deposit date:2010-09-11
Release date:2010-11-17
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.28 Å)
Cite:tRNAHis guanylyltransferase (THG1), a unique 3'-5' nucleotidyl transferase, shares unexpected structural homology with canonical 5'-3' DNA polymerases.
Proc.Natl.Acad.Sci.USA, 107, 2010
8T1R
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BU of 8t1r by Molmil
Crystal structure of human CPSF73 catalytic segment in complex with compound 2
Descriptor: 3-[7,7-bis(oxidanyl)-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-trien-5-yl]-~{N}-[3-(3-methoxyphenyl)phenyl]propanamide, CHLORIDE ION, Cleavage and polyadenylation specificity factor subunit 3, ...
Authors:Huang, J, Tong, L.
Deposit date:2023-06-02
Release date:2023-11-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Anticancer benzoxaboroles block pre-mRNA processing by directly inhibiting CPSF3.
Cell Chem Biol, 31, 2024
8T1Q
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BU of 8t1q by Molmil
Crystal structure of human CPSF73 catalytic segment in complex with compound 1
Descriptor: 3-[7,7-bis(oxidanyl)-8-oxa-7-boranuidabicyclo[4.3.0]nona-1,3,5-trien-5-yl]-~{N}-[3-(4-ethanoylphenyl)phenyl]propanamide, CHLORIDE ION, Cleavage and polyadenylation specificity factor subunit 3, ...
Authors:Huang, J, Tong, L.
Deposit date:2023-06-02
Release date:2023-11-08
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Anticancer benzoxaboroles block pre-mRNA processing by directly inhibiting CPSF3.
Cell Chem Biol, 31, 2024
5UZ9
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BU of 5uz9 by Molmil
Cryo EM structure of anti-CRISPRs, AcrF1 and AcrF2, bound to type I-F crRNA-guided CRISPR surveillance complex
Descriptor: Anti-CRISPR protein 30, Anti-CRISPR protein Acr30-35, CRISPR RNA (60-MER), ...
Authors:Chowdhury, S, Carter, J, Rollins, M.F, Jackson, R.N, Hoffmann, C, Nosaka, L, Bondy-Denomy, J, Maxwell, K.L, Davidson, A.R, Fischer, E.R, Lander, G.C, Wiedenheft, B.
Deposit date:2017-02-25
Release date:2017-04-26
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structure Reveals Mechanisms of Viral Suppressors that Intercept a CRISPR RNA-Guided Surveillance Complex.
Cell, 169, 2017
1Y39
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BU of 1y39 by Molmil
Co-evolution of protein and RNA structures within a highly conserved ribosomal domain
Descriptor: 50S ribosomal protein L11, 58 Nucleotide Ribosomal 23S RNA Domain, COBALT (III) ION, ...
Authors:Dunstan, M.S, GuhaThakurta, D, Draper, D.E, Conn, G.L.
Deposit date:2004-11-24
Release date:2005-03-22
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Coevolution of Protein and RNA Structures within a Highly Conserved Ribosomal Domain
Chem.Biol., 12, 2005
2NR0
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BU of 2nr0 by Molmil
Crystal structure of pseudoudirinde synthase TruA in complex with leucyl tRNA
Descriptor: leucyl tRNA, tRNA pseudouridine synthase A
Authors:Hur, S, Stroud, R.M.
Deposit date:2006-11-01
Release date:2007-05-15
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:How U38, 39, and 40 of Many tRNAs Become the Targets for Pseudouridylation by TruA.
Mol.Cell, 26, 2007
6BU9
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BU of 6bu9 by Molmil
Drosophila Dicer-2 bound to blunt dsRNA
Descriptor: Dicer-2, isoform A, RNA (5'-R(*AP*CP*UP*AP*CP*UP*AP*UP*AP*CP*AP*AP*CP*CP*UP*AP*C)-3'), ...
Authors:Shen, P.S, Sinha, N.K, Bass, B.L.
Deposit date:2017-12-09
Release date:2017-12-27
Last modified:2024-03-13
Method:ELECTRON MICROSCOPY (6.8 Å)
Cite:Dicer uses distinct modules for recognizing dsRNA termini.
Science, 359, 2018
8R3Z
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BU of 8r3z by Molmil
Cryo-EM structure of the Asgard archaeal Argonaute HrAgo1 bound to a guide RNA
Descriptor: HrAgo1, MAGNESIUM ION, RNA (5'-R(P*UP*GP*AP*GP*GP*U*(MG))-3')
Authors:Finocchio, G, Swarts, D, Jinek, M.
Deposit date:2023-11-10
Release date:2024-06-19
Last modified:2025-07-09
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:RNA-guided RNA silencing by an Asgard archaeal Argonaute.
Nat Commun, 15, 2024
3WBM
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BU of 3wbm by Molmil
Crystal Structure of protein-RNA complex
Descriptor: DNA/RNA-binding protein Alba 1, RNA (25-MER)
Authors:Ding, J, Wang, D.C.
Deposit date:2013-05-20
Release date:2013-12-11
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Biochemical and structural insights into RNA binding by Ssh10b, a member of the highly conserved Sac10b protein family in Archaea.
J.Biol.Chem., 289, 2014
6XMG
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BU of 6xmg by Molmil
Cryo-EM structure of Cas12g ternary complex
Descriptor: CRISPR-Cas, RNA (130-MER), RNA (5'-R(P*UP*UP*AP*AP*UP*GP*CP*GP*GP*UP*AP*GP*UP*UP*UP*AP*UP*CP*AP*CP*AP*GP*UP*U)-3'), ...
Authors:Chang, L, Li, Z, Zhang, H.
Deposit date:2020-06-30
Release date:2021-01-13
Last modified:2025-05-14
Method:ELECTRON MICROSCOPY (4.8 Å)
Cite:Cryo-EM structure of the RNA-guided ribonuclease Cas12g.
Nat.Chem.Biol., 17, 2021
3LTI
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BU of 3lti by Molmil
Crystal structure of the Escherichia coli RNA polymerase beta subunit beta2-betai4 domains
Descriptor: DNA-directed RNA polymerase subunit beta
Authors:Darst, S.A, Opalka, N.
Deposit date:2010-02-16
Release date:2010-10-20
Last modified:2025-03-26
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Complete structural model of Escherichia coli RNA polymerase from a hybrid approach.
Plos Biol., 8, 2010
4NRU
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BU of 4nru by Molmil
Murine Norovirus RNA-dependent-RNA-polymerase in complex with Compound 6, a suramin derivative
Descriptor: 4-({4-methyl-3-[(3-nitrobenzoyl)amino]benzoyl}amino)naphthalene-1,5-disulfonic acid, MAGNESIUM ION, RNA dependent RNA polymerase
Authors:Milani, M, Croci, R, Pezzullo, M, Tarantino, D, Mastrangelo, E, Bolognesi, M.
Deposit date:2013-11-27
Release date:2014-10-15
Last modified:2024-11-27
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural bases of norovirus RNA dependent RNA polymerase inhibition by novel suramin-related compounds.
Plos One, 9, 2014
7QP2
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BU of 7qp2 by Molmil
1-deazaguanosine modified-RNA Sarcin Ricin Loop
Descriptor: GLYCEROL, RNA (27-MER)
Authors:Ennifar, E, Micura, R, Bereiter, R, Renard, E, Kreutz, C.
Deposit date:2021-12-30
Release date:2022-07-20
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (0.9 Å)
Cite:1-Deazaguanosine-Modified RNA: The Missing Piece for Functional RNA Atomic Mutagenesis.
J.Am.Chem.Soc., 144, 2022
5CD4
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BU of 5cd4 by Molmil
The Type IE CRISPR Cascade complex from E. coli, with two assemblies in the asymmetric unit arranged back-to-back
Descriptor: CRISPR system Cascade subunit CasA, CRISPR system Cascade subunit CasB, CRISPR system Cascade subunit CasC, ...
Authors:Jackson, R.N, Golden, S.M, Carter, J, Wiedenheft, B.
Deposit date:2015-07-03
Release date:2015-08-26
Last modified:2024-12-25
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Mechanism of CRISPR-RNA guided recognition of DNA targets in Escherichia coli.
Nucleic Acids Res., 43, 2015
6EOJ
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BU of 6eoj by Molmil
PolyA polymerase module of the cleavage and polyadenylation factor (CPF) from Saccharomyces cerevisiae
Descriptor: Polyadenylation factor subunit 2,Polyadenylation factor subunit 2, Protein CFT1, ZINC ION, ...
Authors:Casanal, A, Kumar, A, Hill, C.H, Emsley, P, Passmore, L.A.
Deposit date:2017-10-09
Release date:2017-11-15
Last modified:2024-05-15
Method:ELECTRON MICROSCOPY (3.55 Å)
Cite:Architecture of eukaryotic mRNA 3'-end processing machinery.
Science, 358, 2017
7Z26
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BU of 7z26 by Molmil
Crystal structure of YTHDF2 YTH domain in complex with m6A RNA
Descriptor: GLYCEROL, RNA (5'-R(P*(6MZ)P*CP*U)-3'), SULFATE ION, ...
Authors:Nai, F, Nachawati, R, Li, Y, Caflisch, A.
Deposit date:2022-02-25
Release date:2022-03-16
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Fragment Ligands of the m 6 A-RNA Reader YTHDF2.
Acs Med.Chem.Lett., 13, 2022
4MJ7
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BU of 4mj7 by Molmil
Crystal structure of the PIN domain of Saccharomyces cerevisiae Utp23
Descriptor: ZINC ION, rRNA-processing protein UTP23
Authors:Lu, J, Ye, K.
Deposit date:2013-09-03
Release date:2013-11-06
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Structural and functional analysis of Utp23, a yeast ribosome synthesis factor with degenerate PIN domain
Rna, 19, 2013
6HBX
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BU of 6hbx by Molmil
The structure of the G. violaceus guanidine II riboswitch P2 stem-loop with ethylguanidine
Descriptor: N-ETHYLGUANIDINE, RNA (5'-R(*GP*GP*UP*GP*GP*GP*GP*AP*CP*GP*AP*CP*CP*CP*CP*AP*(CBV)P*C)-3'), SODIUM ION, ...
Authors:Huang, L, Lilley, D.M.J.
Deposit date:2018-08-13
Release date:2019-02-20
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (1.54 Å)
Cite:Structure-guided design of a high-affinity ligand for a riboswitch.
Rna, 25, 2019

238582

数据于2025-07-09公开中

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