PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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2ZI0	Crystal structure of Tav2b/siRNA complex Descriptor: Protein 2b, RNA (5'-D(P*AP*GP*AP*CP*AP*GP*CP*AP*UP*UP*AP*UP*GP*CP*UP*GP*UP*CP*UP*UP*U)-3') Authors: Yuan, Y.A, Chen, H.-Y. Deposit date: 2008-02-12 Release date: 2008-07-22 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.82 Å) Cite: Structural basis for RNA-silencing suppression by Tomato aspermy virus protein 2b Embo Rep., 9, 2008
3LN8	The X-ray structure of Zf-RNase-1 from a new crystal form at pH 7.3 Descriptor: HYDROLASE, SULFATE ION Authors: Russo Krauss, I, Merlino, A, Mazzarella, L, Sica, F. Deposit date: 2010-02-02 Release date: 2010-12-08 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.61 Å) Cite: A new RNase sheds light on the RNase/angiogenin subfamily from zebrafish. Biochem.J., 433, 2010
2LBX	Solution structure of the S. cerevisiae H/ACA RNP protein Nhp2p Descriptor: H/ACA ribonucleoprotein complex subunit 2 Authors: Koo, B, Park, C, Fernandez, C.F, Chim, N, Ding, Y, Chanfreau, G, Feigon, J. Deposit date: 2011-04-07 Release date: 2011-07-06 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structure of H/ACA RNP Protein Nhp2p Reveals Cis/Trans Isomerization of a Conserved Proline at the RNA and Nop10 Binding Interface. J.Mol.Biol., 411, 2011
7EIU	Crystal structure of Mei2 RRM3 in complex with 8mer meiRNA Descriptor: GLYCEROL, Meiosis protein mei2, RNA (5'-R(P*UP*UP*CP*UP*GP*C)-3') Authors: Shen, S.Y, Lv, M.Q. Deposit date: 2021-03-31 Release date: 2022-04-06 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.349 Å) Cite: Structural insights reveal the specific recognition of meiRNA by the Mei2 protein. J Mol Cell Biol, 14, 2022
4LG2	Crystal structure of Reston Ebola virus VP35 RNA binding domain bound to 12-bp dsRNA Descriptor: Polymerase cofactor, dsRNA Authors: Bale, S, Julien, J.-P, Bornholdt, Z.A, Krois, A.S, Wilson, I.A, Saphire, E.O. Deposit date: 2013-06-27 Release date: 2013-07-10 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Ebolavirus VP35 coats the backbone of double-stranded RNA for interferon antagonism. J.Virol., 87, 2013
2KDQ	Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimic of Tat protein Descriptor: HIV-1 TAR RNA, L-22 CYCLIC PEPTIDE Authors: Davidson, A, Leeper, T.C, Varani, G. Deposit date: 2009-01-14 Release date: 2009-06-23 Last modified: 2022-03-16 Method: SOLUTION NMR Cite: Simultaneous recognition of HIV-1 TAR RNA bulge and loop sequences by cyclic peptide mimics of Tat protein Proc.Natl.Acad.Sci.USA, 106, 2009
2LBQ	NMR structure of i6A37_tyrASL Descriptor: RNA (5'-R(*GP*GP*GP*GP*AP*CP*UP*GP*UP*AP*(6IA)P*AP*UP*CP*CP*CP*C)-3') Authors: Denmon, A.P, Wang, J, Nikonowicz, E.P. Deposit date: 2011-04-05 Release date: 2011-08-03 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Conformation Effects of Base Modification on the Anticodon Stem-Loop of Bacillus subtilis tRNA(Tyr). J.Mol.Biol., 412, 2011
1SB7	Crystal structure of the E.coli pseudouridine synthase TruD Descriptor: GLYCEROL, PHOSPHATE ION, tRNA pseudouridine synthase D Authors: Hoang, C, Ferre-D'Amare, A.R. Deposit date: 2004-02-10 Release date: 2004-06-29 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of the highly divergent pseudouridine synthase TruD reveals a circular permutation of a conserved fold. Rna, 10, 2004
7F36	TacT complexed with acetyl-glycyl-tRNAGly Descriptor: ACETYLAMINO-ACETIC ACID, CALCIUM ION, N-acetyltransferase domain-containing protein, ... Authors: Yashiro, Y, Tomita, K. Deposit date: 2021-06-15 Release date: 2021-12-22 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.098 Å) Cite: Molecular basis of glycyl-tRNAGly acetylation by TacT from Salmonella Typhimurium Cell Rep, 37, 2021
1BJ2	RNA LOOP-LOOP COMPLEX: THE COLE1 INVERTED LOOP SEQUENCE, NMR, 8 STRUCTURES Descriptor: RNA (5'-R(*GP*CP*AP*CP*CP*GP*AP*AP*CP*CP*AP*UP*CP*CP*GP*GP*UP*GP*C)-3'), RNA (5'-R(*GP*GP*CP*AP*AP*CP*GP*GP*AP*UP*GP*GP*UP*UP*CP*GP*UP*UP*GP*CP*C)-3') Authors: Lee, A.J, Crothers, D.M. Deposit date: 1998-07-02 Release date: 1999-02-02 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The solution structure of an RNA loop-loop complex: the ColE1 inverted loop sequence. Structure, 6, 1998
4A91	Crystal structure of the glutamyl-queuosine tRNAAsp synthetase from E. coli complexed with L-glutamate Descriptor: GLUTAMIC ACID, GLUTAMYL-Q TRNA(ASP) SYNTHETASE, ZINC ION Authors: Blaise, M, Olieric, V, Sauter, C, Lorber, B, Roy, B, Karmakar, S, Banerjee, R, Becker, H.D, Kern, D. Deposit date: 2011-11-22 Release date: 2012-01-11 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.75 Å) Cite: Crystal Structure of Glutamyl-Queuosine Trnaasp Synthetase Complexed with L-Glutamate: Structural Elements Mediating tRNA-Independent Activation of Glutamate and Glutamylation of Trnaasp Anticodon. J.Mol.Biol., 381, 2008
3MW6	Crystal structure of NMB1681 from Neisseria meningitidis MC58, a FinO-like RNA chaperone Descriptor: GLYCEROL, uncharacterized protein NMB1681 Authors: Tan, K, Zhou, M, Duggan, E, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) Deposit date: 2010-05-05 Release date: 2010-06-23 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.209 Å) Cite: N. meningitidis 1681 is a member of the FinO family of RNA chaperones. Rna Biol., 7, 2010
315D	CRYSTAL STRUCTURE OF AN ALTERNATING OCTAMER R(GUAUGUA)D(C) WITH ADJACENT G-U WOBBLE PAIRS Descriptor: DNA/RNA (5'-R(*GP*UP*AP*UP*GP*UP*AP*)-D(*C)-3') Authors: Biswas, R, Wahl, M.C, Ban, C, Sundaralingam, M. Deposit date: 1997-02-26 Release date: 1997-09-23 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.38 Å) Cite: Crystal structure of an alternating octamer r(GUAUGUA)dC with adjacent G x U wobble pairs J.Mol.Biol., 267, 1997
4N0L	Methanopyrus kandleri Csm3 crystal structure Descriptor: Predicted component of a thermophile-specific DNA repair system, contains a RAMP domain, ZINC ION Authors: Hrle, A, Su, A.A, Ebert, J, Benda, C, Conti, E, Randau, L. Deposit date: 2013-10-02 Release date: 2013-11-13 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.37 Å) Cite: Structure and RNA-binding properties of the Type III-A CRISPR-associated protein Csm3. Rna Biol., 10, 2013
3A4M	Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, IODIDE ION, ... Authors: Araiso, Y, Ishitani, R, Soll, D, Nureki, O. Deposit date: 2009-07-10 Release date: 2009-10-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.792 Å) Cite: Structure of a tRNA-dependent kinase essential for selenocysteine decoding Proc.Natl.Acad.Sci.USA, 106, 2009
3A4N	Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase Descriptor: 1,2-ETHANEDIOL, IODIDE ION, L-seryl-tRNA(Sec) kinase, ... Authors: Araiso, Y, Ishitani, R, Soll, D, Nureki, O. Deposit date: 2009-07-10 Release date: 2009-10-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structure of a tRNA-dependent kinase essential for selenocysteine decoding Proc.Natl.Acad.Sci.USA, 106, 2009
2IL9	Crystal Structure of Plautia Stali Intestine Virus Intergenic Region Internal Ribosome Entry Site Ribosomal Binding Domain RNA at 3.1 Angstroms Descriptor: Ribosomal Binding Domain of the IRES RNA Authors: Pfingsten, J.S, Costantino, D.A, Kieft, J.S. Deposit date: 2006-10-02 Release date: 2007-02-13 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (3.1 Å) Cite: Structural basis for ribosome recruitment and manipulation by a viral IRES RNA Science, 314, 2006
3A4L	Crystal structure of archaeal O-phosphoseryl-tRNA(Sec) kinase Descriptor: 1,2-ETHANEDIOL, IODIDE ION, L-seryl-tRNA(Sec) kinase, ... Authors: Araiso, Y, Ishitani, R, Soll, D, Nureki, O. Deposit date: 2009-07-10 Release date: 2009-10-20 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structure of a tRNA-dependent kinase essential for selenocysteine decoding Proc.Natl.Acad.Sci.USA, 106, 2009
1ILE	ISOLEUCYL-TRNA SYNTHETASE Descriptor: ISOLEUCYL-TRNA SYNTHETASE, ZINC ION Authors: Nureki, O, Vassylyev, D.G, Tateno, M, Shimada, A, Nakama, T, Fukai, S, Konno, M, Schimmel, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 1998-02-24 Release date: 1999-04-13 Last modified: 2011-07-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Enzyme structure with two catalytic sites for double-sieve selection of substrate. Science, 280, 1998
2HVS	Structure of T4 RNA Ligase 2 with Nicked 5'-Adenylated nucleic acid duplex containing a 2'-deoxyribonucleotide at the nick Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*TP*TP*G)-3', 5'-D(*CP*AP*AP*TP*TP*GP*CP*GP*AP*C)-R(P*(OMC)P*C)-3', ... Authors: Nandakumar, J, Lima, C.D. Deposit date: 2006-07-30 Release date: 2006-10-17 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.5 Å) Cite: RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward. Cell(Cambridge,Mass.), 127, 2006
2HVR	Structure of T4 RNA Ligase 2 with Nicked 5'-Adenylated nucleic acid duplex containing a 3'-deoxyribonucleotide at the nick Descriptor: 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 5'-D(*AP*TP*TP*CP*CP*GP*AP*TP*AP*GP*TP*GP*GP*GP*GP*TP*CP*GP*CP*AP*AP*TP*TP*G)-3', 5'-D(*CP*AP*AP*TP*TP*GP*CP*GP*AP*C)-R(P*(OMC)P*C)-3', ... Authors: Nandakumar, J, Lima, C.D. Deposit date: 2006-07-30 Release date: 2006-10-17 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.45 Å) Cite: RNA Ligase Structures Reveal the Basis for RNA Specificity and Conformational Changes that Drive Ligation Forward. Cell(Cambridge,Mass.), 127, 2006
2P89	Solution structure of the 3' pseudouridyation pocket of U65 snoRNA with bound substrate Descriptor: 28S rRNA, U65 H/ACA snoRNA Authors: Wu, H, Feigon, J. Deposit date: 2007-03-22 Release date: 2007-04-03 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: H/ACA small nucleolar RNA pseudouridylation pockets bind substrate RNA to form three-way junctions that position the target U for modification. Proc.Natl.Acad.Sci.Usa, 104, 2007
2XZ2	Crystal structure of CstF-50 homodimerization domain Descriptor: CSTF-50, ISOFORM B, DI(HYDROXYETHYL)ETHER, ... Authors: Moreno-Morcillo, M, Fribourg, S. Deposit date: 2010-11-22 Release date: 2011-01-26 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Hexameric Architecture of Cstf Supported by Cstf- 50 Homodimerization Domain Structure. RNA, 17, 2011
6QXP	Protein peptide complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Leucine-rich repeat extensin-like protein 2, ... Authors: Moussu, S, Caroline, C, Santos-Fernandez, G, Wehrle, S, Grossniklaus, U, Santiago, J. Deposit date: 2019-03-07 Release date: 2020-03-25 Last modified: 2020-07-29 Method: X-RAY DIFFRACTION (3.201 Å) Cite: Structural basis for recognition of RALF peptides by LRX proteins during pollen tube growth. Proc.Natl.Acad.Sci.USA, 117, 2020
1U3K	The solution structure of a substrate of archaeal pre-tRNA splicing endonucleases Descriptor: ABISS7 Authors: Pollock, E.C, Moore, P.B. Deposit date: 2004-07-22 Release date: 2005-07-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The solution structure of a substrate of archaeal pre-tRNA splicing endonucleases To be Published

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