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5ZLD	SOLUTION NMR STRUCTURE OF A 14-MER DOUBLE STRANDED DNA DUPLEX CGCGAAATTTCGCG Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*AP*TP*TP*TP*CP*GP*CP*G)-3') Authors: Ganguly, S, Basu, G. Deposit date: 2018-03-27 Release date: 2018-04-11 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: DNA Minor Groove-Induced cis - trans Isomerization of a Near-Infrared Fluorescent Probe. Biochemistry, 2021
6EMY	Structure of the Tn1549 transposon Integrase (aa 82-397, Y379F) in complex with transposon right end DNA Descriptor: DNA (20-MER), DNA (26-MER), Int protein Authors: Schulz, E.C, Rubio-Cosials, A, Barabas, O. Deposit date: 2017-10-04 Release date: 2018-04-04 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Transposase-DNA Complex Structures Reveal Mechanisms for Conjugative Transposition of Antibiotic Resistance. Cell, 173, 2018
1EMH	CRYSTAL STRUCTURE OF HUMAN URACIL-DNA GLYCOSYLASE BOUND TO UNCLEAVED SUBSTRATE-CONTAINING DNA Descriptor: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*(P2U)P*AP*TP*CP*TP*T)-3'), URACIL-DNA GLYCOSYLASE Authors: Parikh, S.S, Slupphaug, G, Krokan, H.E, Blackburn, G.M, Tainer, J.A. Deposit date: 2000-03-16 Release date: 2000-05-16 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Uracil-DNA glycosylase-DNA substrate and product structures: conformational strain promotes catalytic efficiency by coupled stereoelectronic effects. Proc.Natl.Acad.Sci.USA, 97, 2000
2OFI	Crystal Structure of 3-methyladenine DNA Glycosylase I (TAG) bound to DNA/3mA Descriptor: 3-METHYL-3H-PURIN-6-YLAMINE, 3-methyladenine DNA glycosylase I, constitutive, ... Authors: Metz, A.H, Hollis, T, Eichman, B.F. Deposit date: 2007-01-03 Release date: 2007-05-15 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.85 Å) Cite: DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG). Embo J., 26, 2007
1D26	EFFECT OF A SINGLE 3'-METHYLENE PHOSPHONATE LINKAGE ON THE CONFORMATION OF AN A-DNA OCTAMER DOUBLE HELIX Descriptor: DNA (5'-D(*GP*CP*CP*CP*(G31)P*GP*GP*C)-3') Authors: Heinemann, U. Deposit date: 1990-09-17 Release date: 1992-04-07 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.12 Å) Cite: Effect of a single 3'-methylene phosphonate linkage on the conformation of an A-DNA octamer double helix. Nucleic Acids Res., 19, 1991
1DE8	HUMAN APURINIC/APYRIMIDINIC ENDONUCLEASE-1 (APE1) BOUND TO ABASIC DNA Descriptor: DNA (5'-D(*CP*GP*AP*TP*CP*GP*GP*TP*AP*GP*C)-3'), DNA (5'-D(*GP*CP*TP*AP*CP*(3DR)P*GP*AP*TP*CP*G)-3'), MAJOR APURINIC/APYRIMIDINIC ENDONUCLEASE Authors: Mol, C.D, Izumi, T, Mitra, S, Tainer, J.A. Deposit date: 1999-11-13 Release date: 2000-02-02 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.95 Å) Cite: DNA-bound structures and mutants reveal abasic DNA binding by APE1 and DNA repair coordination [corrected Nature, 403, 2000
2OFK	Crystal Structure of 3-methyladenine DNA glycosylase I (TAG) Descriptor: 3-methyladenine DNA glycosylase I, constitutive, TRIETHYLENE GLYCOL, ... Authors: Metz, A.H, Hollis, T, Eichman, B.F. Deposit date: 2007-01-03 Release date: 2007-05-15 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.5 Å) Cite: DNA damage recognition and repair by 3-methyladenine DNA glycosylase I (TAG). Embo J., 26, 2007
2K7R	N-terminal domain of the Bacillus subtilis helicase-loading protein DnaI Descriptor: Primosomal protein dnaI, ZINC ION Authors: Loscha, K.V, Jaudzems, K, Ioannou, C, Su, X.C, Hill, F.R, Otting, G, Dixon, N.E, Liepinsh, E. Deposit date: 2008-08-19 Release date: 2009-03-03 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: A novel zinc-binding fold in the helicase interaction domain of the Bacillus subtilis DnaI helicase loader Nucleic Acids Res., 37, 2009
3DPP	Crystal structure of the substrate binding domain of E. coli DnaK in complex with a long pyrrhocoricin-derived inhibitor peptide (form A) Descriptor: Chaperone protein dnaK, SULFATE ION, inhibitor peptide Authors: Roujeinikova, A. Deposit date: 2008-07-09 Release date: 2009-03-10 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Allosteric coupling between the lid and interdomain linker in DnaK revealed by inhibitor binding studies. J.Bacteriol., 191, 2009
3DPQ	Crystal structure of the substrate binding domain of E. coli DnaK in complex with a long pyrrhocoricin-derived inhibitor peptide (form B) Descriptor: Chaperone protein dnaK, SULFATE ION, inhibitor peptide Authors: Roujeinikova, A. Deposit date: 2008-07-09 Release date: 2009-03-10 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Allosteric coupling between the lid and interdomain linker in DnaK revealed by inhibitor binding studies. J.Bacteriol., 191, 2009
3DPO	Crystal structure of the substrate binding domain of E. coli DnaK in complex with a short pyrrhocoricin-derived inhibitor peptide Descriptor: Chaperone protein dnaK, SULFATE ION, inhibitor peptide Authors: Roujeinikova, A. Deposit date: 2008-07-09 Release date: 2009-03-10 Last modified: 2024-11-13 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Allosteric coupling between the lid and interdomain linker in DnaK revealed by inhibitor binding studies J.Bacteriol., 191, 2009
2M2C	Solution structure of Duplex DNA Descriptor: DNA (5'-D(*CP*GP*CP*GP*TP*AP*GP*CP*AP*TP*GP*CP*GP*C)-3'), DNA (5'-D(*GP*CP*GP*CP*AP*TP*GP*CP*TP*AP*CP*GP*CP*G)-3') Authors: Ghosh, A, Kar, R.K, Chatterjee, S, Bhunia, A. Deposit date: 2012-12-18 Release date: 2013-01-23 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Indolicidin targets duplex DNA: structural and mechanistic insight through a combination of spectroscopy and microscopy. Chemmedchem, 9, 2014
175D	THE DNA SEQUENCE GCGAATGAGC CONTAINING THE HUMAN CENTROMERE CORE SEQUENCE GAAT FORMS A SELF-COMPLEMENTARY DUPLEX WITH SHEARED G:A PAIRS IN SOLUTION Descriptor: DNA (5'-D(*GP*CP*GP*AP*AP*TP*GP*AP*GP*C)-3') Authors: Chou, S.-H, Cheng, J.-W, Fedoroff, O, Reid, B.R. Deposit date: 1994-04-29 Release date: 1994-09-30 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: DNA sequence GCGAATGAGC containing the human centromere core sequence GAAT forms a self-complementary duplex with sheared G.A pairs in solution. J.Mol.Biol., 241, 1994
3RR5	DNA ligase from the archaeon Thermococcus sp. 1519 Descriptor: DNA ligase, MAGNESIUM ION Authors: Petrova, T, Bezsudnova, E.Y, Boyko, K.M, Mardanov, A.V, Popov, V.O, Polyakov, K.M, Ravin, N.V, Shabalin, I.G, Skryabin, K.G, Stekhanova, T.N, Kovalchuk, M.V. Deposit date: 2011-04-29 Release date: 2012-04-11 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.018 Å) Cite: ATP-dependent DNA ligase from Thermococcus sp. 1519 displays a new arrangement of the OB-fold domain. Acta Crystallogr.,Sect.F, 68, 2012
1DA0	DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURE OF D(CGATCG) COMPLEXED WITH DAUNOMYCIN Descriptor: DAUNOMYCIN, DNA (5'-D(*CP*GP*AP*TP*CP*G)-3') Authors: Moore, M.H, Hunter, W.N, Langlois D'Estaintot, B, Kennard, O. Deposit date: 1992-10-17 Release date: 1993-07-15 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.5 Å) Cite: DNA-drug interactions. The crystal structure of d(CGATCG) complexed with daunomycin. J.Mol.Biol., 206, 1989
7CIZ	Crystal structure of DNAJC9 HBD helix2 in complex with H3.3-H4 dimer and MCM2 HBD Descriptor: DNA replication licensing factor MCM2, DnaJ homolog subfamily C member 9, Histone H3.3, ... Authors: Bao, H, Huang, H. Deposit date: 2020-07-08 Release date: 2021-04-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.8 Å) Cite: DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network. Mol.Cell, 81, 2021
7CJ0	Crystal structure of DNAJC9 HBD in complex with H3.3-H4 dimer and MCM2 HBD Descriptor: DNA replication licensing factor MCM2, DnaJ homolog subfamily C member 9, GLYCEROL, ... Authors: Bao, H, Huang, H. Deposit date: 2020-07-09 Release date: 2021-04-14 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: DNAJC9 integrates heat shock molecular chaperones into the histone chaperone network. Mol.Cell, 81, 2021
459D	DNA MINOR-GROOVE RECOGNITION OF A TRIS-BENZIMIDAZOLE DRUG Descriptor: 2''-(4-METHOXYPHENYL)-5-(3-AMINO-1-PYRROLIDINYL)-2,5',2',5''-TRI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*(CBR)P*AP*TP*AP*TP*TP*TP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*AP*AP*TP*AP*TP*GP*CP*G)-3') Authors: Aymami, J, Nunn, C.M, Neidle, S. Deposit date: 1999-03-10 Release date: 1999-06-28 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (2.3 Å) Cite: DNA minor groove recognition of a non-self-complementary AT-rich sequence by a tris-benzimidazole ligand. Nucleic Acids Res., 27, 1999
4J7Z	Thermus thermophilus DNAJ J- and G/F-DOMAINS Descriptor: Chaperone protein DnaJ 2, GLYCEROL Authors: Barends, T.R.M, Brosi, R.W, Steinmetz, A, Scherer, A, Hartmann, E, Eschenbach, J, Lorenz, T, Seidel, R, Shoeman, R, Zimmermann, S, Bittl, R, Schlichting, I, Reinstein, J. Deposit date: 2013-02-14 Release date: 2013-07-31 Last modified: 2024-02-28 Method: EPR (1.64 Å), X-RAY DIFFRACTION Cite: Combining crystallography and EPR: crystal and solution structures of the multidomain cochaperone DnaJ. Acta Crystallogr.,Sect.D, 69, 2013
4J80	Thermus thermophilus DnaJ Descriptor: Chaperone protein DnaJ 2 Authors: Barends, T.R.M, Brosi, R.W, Steinmetz, A, Scherer, A, Hartmann, E, Eschenbach, J, Lorenz, T, Seidel, R, Shoeman, R, Zimmermann, S, Bittl, R, Schlichting, I, Reinstein, J. Deposit date: 2013-02-14 Release date: 2013-07-31 Last modified: 2024-10-16 Method: EPR (2.9 Å), X-RAY DIFFRACTION Cite: Combining crystallography and EPR: crystal and solution structures of the multidomain cochaperone DnaJ. Acta Crystallogr.,Sect.D, 69, 2013
2LZW	DNA duplex containing mispair-aligned O6G-heptylene-O6G interstrand cross-link Descriptor: DNA (5'-D(*CP*GP*AP*AP*AP*GP*TP*TP*TP*CP*G)-3'), HEPTANE Authors: Denisov, A.Y, McManus, F.P, Noronha, A.M, Wilds, C.J. Deposit date: 2012-10-11 Release date: 2013-10-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase. Org.Biomol.Chem., 15, 2017
2LZV	DNA duplex containing mispair-aligned O4U-heptylene-O4U interstrand cross-link Descriptor: DNA (5'-D(*CP*GP*AP*AP*AP*UP*TP*TP*TP*CP*G)-3'), HEPTANE Authors: Denisov, A.Y, McManus, F.P, Noronha, A.M, Wilds, C.J. Deposit date: 2012-10-11 Release date: 2013-10-16 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural basis of interstrand cross-link repair by O 6 -alkylguanine DNA alkyltransferase. Org.Biomol.Chem., 15, 2017
5FHL	Extensive amphimorphism in DNA: Three stable conformations for the decadeoxynucleotide d(GCATGCATGC) Descriptor: DNA (5'-D(*GP*CP*AP*TP*GP*CP*AP*TP*GP*C)-3') Authors: Thirugnanasambandam, A, Karthik, S, Gautham, N. Deposit date: 2015-12-22 Release date: 2016-06-29 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.791 Å) Cite: DNA polymorphism in crystals: three stable conformations for the decadeoxynucleotide d(GCATGCATGC). Acta Crystallogr D Struct Biol, 72, 2016
5OBU	Mycoplasma genitalium DnaK deletion mutant lacking SBDalpha in complex with AMPPNP. Descriptor: Chaperone protein DnaK, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, ... Authors: Adell, M, Calisto, B, Fita, I, Martinelli, L. Deposit date: 2017-06-29 Release date: 2018-05-09 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2 Å) Cite: The nucleotide-bound/substrate-bound conformation of the Mycoplasma genitalium DnaK chaperone. Protein Sci., 27, 2018
5OBY	Mycoplasma genitalium DnaK-NBD in complex with AMP-PNP Descriptor: Chaperone protein DnaK, GLYCEROL, MAGNESIUM ION, ... Authors: Adell, M, Calisto, B, Fita, I, Martinelli, L. Deposit date: 2017-06-29 Release date: 2018-05-09 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.3 Å) Cite: The nucleotide-bound/substrate-bound conformation of the Mycoplasma genitalium DnaK chaperone. Protein Sci., 27, 2018

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