PDB: 338 resultsInfo pagesStatus searchChemie searchBIRD

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4GOB	Low pH Crystal Structure of a reconstructed Kaede-type Red Fluorescent Protein, Least Evolved Ancestor (LEA) Descriptor: Kaede-type Fluorescent Protein Authors: Kim, H, Grunkemeyer, T.J, Chen, L, Fromme, R, Wachter, R.M. Deposit date: 2012-08-19 Release date: 2013-07-31 Last modified: 2024-11-27 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Acid-base catalysis and crystal structures of a least evolved ancestral GFP-like protein undergoing green-to-red photoconversion. Biochemistry, 52, 2013
4GPZ	Crystal structure of human B type phosphoglycerate mutase H11 phosphorylated form Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CHLORIDE ION, Phosphoglycerate mutase 1 Authors: He, C, Zhou, L, Zhang, L. Deposit date: 2012-08-22 Release date: 2013-05-22 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Tyr26 phosphorylation of PGAM1 provides a metabolic advantage to tumours by stabilizing the active conformation. Nat Commun, 4, 2013
4KWI	The crystal structure of angucycline C-6 ketoreductase LanV with bound NADP and 11-deoxy-6-oxylandomycinone Descriptor: 1,8-dihydroxy-3-methyltetraphene-6,7,12(5H)-trione, DI(HYDROXYETHYL)ETHER, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ... Authors: Paananen, P, Patrikainen, P, Mantsala, P, Niemi, J, Niiranen, L, Metsa-Ketela, M. Deposit date: 2013-05-24 Release date: 2013-07-31 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural and functional analysis of angucycline C-6 ketoreductase LanV involved in landomycin biosynthesis. Biochemistry, 52, 2013
4H5D	Crystal structure of human FPPS in ternary complex with YS0470 and inorganic pyrophosphate Descriptor: Farnesyl pyrophosphate synthase, MAGNESIUM ION, PYROPHOSPHATE 2-, ... Authors: Park, J, Lin, Y.-S, Tsantrizos, Y.S, Berghuis, A.M. Deposit date: 2012-09-18 Release date: 2012-12-26 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.02 Å) Cite: Ternary complex structures of human farnesyl pyrophosphate synthase bound with a novel inhibitor and secondary ligands provide insights into the molecular details of the enzyme's active site closure. Bmc Struct.Biol., 12, 2012
4FWJ	Native structure of LSD2/AOF1/KDM1b in spacegroup of I222 at 2.9A Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, Lysine-specific histone demethylase 1B, PHOSPHATE ION, ... Authors: Zhang, Q, Chen, Z. Deposit date: 2012-07-01 Release date: 2013-01-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structure-function analysis reveals a novel mechanism for regulation of histone demethylase LSD2/AOF1/KDM1b Cell Res., 23, 2013
4G3G	Crystal structure of murine NF-kappaB inducing kinase (NIK) V408L bound to a 2-(aminothiazolyl)phenol (cmp3) Descriptor: 4-fluoro-2-{[4-(pyridin-4-yl)-1,3-thiazol-2-yl]amino}phenol, NF-kappa-beta-inducing kinase Authors: Hymowitz, S. Deposit date: 2012-07-13 Release date: 2012-08-08 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The crystal structure of the catalytic domain of the NF-kappaB inducing kinase reveals a narrow but flexible active site. Structure, 20, 2012
4E04	RpBphP2 chromophore-binding domain crystallized by homologue-directed mutagenesis. Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome (Light-regulated signal transduction histidine kinase), PhyB1 Authors: Bellini, D, Papiz, M.Z. Deposit date: 2012-03-02 Release date: 2012-07-25 Last modified: 2024-11-27 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Dimerization properties of the RpBphP2 chromophore-binding domain crystallized by homologue-directed mutagenesis. Acta Crystallogr.,Sect.D, 68, 2012
4JJ0	Crystal structure of MamP Descriptor: GLYCEROL, HEME C, MamP Authors: Siponen, M, Pignol, D, Arnoux, P. Deposit date: 2013-03-07 Release date: 2013-10-09 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insight into magnetochrome-mediated magnetite biomineralization. Nature, 502, 2013
4LDV	Crystal structure of the DNA binding domain of A. thailana auxin response factor 1 Descriptor: Auxin response factor 1, CHLORIDE ION, FORMIC ACID, ... Authors: boer, D.R, Freire-Rios, A, van den Berg, W.M.A, Weijers, D, Coll, M. Deposit date: 2013-06-25 Release date: 2014-02-12 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors. Cell(Cambridge,Mass.), 156, 2014
4FGU	Crystal structure of prolegumain Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Legumain Authors: Dall, E, Brandstetter, H. Deposit date: 2012-06-05 Release date: 2013-07-03 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Mechanistic and structural studies on legumain explain its zymogenicity, distinct activation pathways, and regulation. Proc.Natl.Acad.Sci.USA, 110, 2013
4HLY	The complex crystal structure of the DNA binding domain of vIRF-1 from the oncogenic KSHV with DNA Descriptor: 5'-D(*GP*CP*GP*TP*CP*GP*AP*GP*AP*CP*GP*C)-3', K9 Authors: Hew, K, Venkatachalam, R. Deposit date: 2012-10-17 Release date: 2013-03-13 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (1.48 Å) Cite: The crystal structure of the DNA-binding domain of vIRF-1 from the oncogenic KSHV reveals a conserved fold for DNA binding and reinforces its role as a transcription factor. Nucleic Acids Res., 41, 2013
4HPH	The crystal structure of isomaltulose synthase mutant E295Q from Erwinia rhapontici NX5 in complex with its natural substrate sucrose Descriptor: CALCIUM ION, GLYCEROL, Sucrose isomerase, ... Authors: Xu, Z, Li, S, Xu, H, Zhou, J. Deposit date: 2012-10-23 Release date: 2013-10-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The Structural Basis of Erwinia rhapontici Isomaltulose Synthase Plos One, 8, 2013
4HOW	The crystal structure of isomaltulose synthase from Erwinia rhapontici NX5 Descriptor: CALCIUM ION, GLYCEROL, Sucrose isomerase Authors: Xu, Z, Li, S, Xu, H, Zhou, J. Deposit date: 2012-10-22 Release date: 2013-10-16 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: The Structural Basis of Erwinia rhapontici Isomaltulose Synthase Plos One, 8, 2013
3WDE	Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F80Y, bound to Cyclomarin A Descriptor: ACETATE ION, Cyclomarin A, Probable ATP-dependent Clp protease ATP-binding subunit Authors: Vasudevan, D, Noble, C.G. Deposit date: 2013-06-14 Release date: 2013-09-18 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (1.44 Å) Cite: Structural basis of mycobacterial inhibition by cyclomarin A J.Biol.Chem., 288, 2013
3WDB	N-terminal domain of Mycobacterium tuberculosis ClpC1 Descriptor: FORMIC ACID, Probable ATP-dependent Clp protease ATP-binding subunit Authors: Vasudevan, D, Noble, C.G. Deposit date: 2013-06-14 Release date: 2013-09-18 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.37 Å) Cite: Structural basis of mycobacterial inhibition by cyclomarin A J.Biol.Chem., 288, 2013
3WDD	Mutant N-terminal domain of Mycobacterium tuberculosis ClpC1, F2Y, bound to Cyclomarin A Descriptor: ACETATE ION, Cyclomarin A, Probable ATP-dependent Clp protease ATP-binding subunit Authors: Vasudevan, D, Noble, C.G. Deposit date: 2013-06-14 Release date: 2013-09-18 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Structural basis of mycobacterial inhibition by cyclomarin A J.Biol.Chem., 288, 2013
3WDC	N-terminal domain of Mycobacterium tuberculosis ClpC1 bound to Cyclomarin A Descriptor: ACETATE ION, Cyclomarin A, Probable ATP-dependent Clp protease ATP-binding subunit Authors: Vasudevan, D, Noble, C.G. Deposit date: 2013-06-14 Release date: 2013-09-18 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (1.18 Å) Cite: Structural basis of mycobacterial inhibition by cyclomarin A J.Biol.Chem., 288, 2013
4J1S	Crystal structure of a ketoreductase domain from the bacillaene assembly line Descriptor: Polyketide synthase PksJ Authors: Zheng, J, Keatinge-Clay, A.T. Deposit date: 2013-02-01 Release date: 2014-03-19 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.01 Å) Cite: Structural and functional studies of a trans-acyltransferase polyketide assembly line enzyme that catalyzes stereoselective alpha- and beta-ketoreduction. Proteins, 82, 2014
4J1Q	Crystal structure of a ketoreductase domain from the bacillaene assembly line Descriptor: NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, Polyketide synthase PksJ Authors: Zheng, J, Keatinge-Clay, A.T. Deposit date: 2013-02-01 Release date: 2014-03-19 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structural and functional studies of a trans-acyltransferase polyketide assembly line enzyme that catalyzes stereoselective alpha- and beta-ketoreduction. Proteins, 82, 2014
6WI5	De novo designed protein Foldit4 Descriptor: De novo designed protein Foldit4 Authors: Bera, A.K, Koepnick, B, Boykov, A, Baker, D. Deposit date: 2020-04-08 Release date: 2020-04-22 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.83 Å) Cite: De novo design of protein logic gates. Science, 368, 2020
8Q4S	Crystal structure of phosphoserine phosphatase (SerB) from Brucella melitensis in complex with AP4 and magnesium. Descriptor: (2S)-2-amino-4-phosphonobutanoic acid, GLYCEROL, MAGNESIUM ION, ... Authors: Scaillet, T, Wouters, J. Deposit date: 2023-08-07 Release date: 2024-08-21 Method: X-RAY DIFFRACTION (2.08 Å) Cite: Crystal structure of phosphoserine phosphatase (SerB) from Brucella melitensis in complex with AP4 and magnesium. To Be Published
5IUL	Crystal structure of the DesK-DesR complex in the phosphotransfer state with high Mg2+ (150 mM) and BeF3 Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, POTASSIUM ION, ... Authors: Trajtenberg, F, Imelio, J.A, Larrieux, N, Buschiazzo, A. Deposit date: 2016-03-18 Release date: 2016-12-21 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3.153 Å) Cite: Regulation of signaling directionality revealed by 3D snapshots of a kinase:regulator complex in action. Elife, 5, 2016
5IUJ	Crystal structure of the DesK-DesR complex in the phosphotransfer state with low Mg2+ (20 mM) Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, POTASSIUM ION, ... Authors: Trajtenberg, F, Imelio, J.A, Larrieux, N, Buschiazzo, A. Deposit date: 2016-03-18 Release date: 2016-12-21 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Regulation of signaling directionality revealed by 3D snapshots of a kinase:regulator complex in action. Elife, 5, 2016
5IUK	Crystal structure of the DesK-DesR complex in the phosphotransfer state with high Mg2+ (150 mM) Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, POTASSIUM ION, ... Authors: Trajtenberg, F, Imelio, J.A, Larrieux, N, Buschiazzo, A. Deposit date: 2016-03-18 Release date: 2016-12-21 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Regulation of signaling directionality revealed by 3D snapshots of a kinase:regulator complex in action. Elife, 5, 2016
5MQH	Structure of the Phosphatase Domain of the Cell Fate Determinant SpoIIE from Bacillus subtilis in a crystal form without domain swapping Descriptor: Serine phosphatase Authors: Levdikov, V.M, Wilkinson, A.J, Blagova, E.V. Deposit date: 2016-12-20 Release date: 2017-05-31 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.45 Å) Cite: A widespread family of serine/threonine protein phosphatases shares a common regulatory switch with proteasomal proteases. Elife, 6, 2017

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