PDB: 48062 resultsInfo pagesStatus searchChemie searchBIRD

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8H68	Crystal structure of Caenorhabditis elegans NMAD-1 in complex with NOG and Mg(II) Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ... Authors: Shi, Y, Ding, J, Yang, H. Deposit date: 2022-10-16 Release date: 2023-02-22 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Caenorhabditis elegans NMAD-1 functions as a demethylase for actin. J Mol Cell Biol, 15, 2023
8HHS	Structure of human apoferritin embedded in crystalline ice Descriptor: Ferritin heavy chain Authors: Shi, H, Wu, C, Zhang, X. Deposit date: 2022-11-17 Release date: 2023-02-15 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.4 Å) Cite: Addressing compressive deformation of proteins embedded in crystalline ice. Structure, 31, 2023
8HIL	A cryo-EM structure of B. oleracea RNA polymerase V at 3.57 Angstrom Descriptor: DNA-dependent RNA polymerase IV and V subunit 2, DNA-directed RNA polymerase V largest subunit, DNA-directed RNA polymerase subunit, ... Authors: Du, X, Xie, G, Hu, H, Du, J. Deposit date: 2022-11-20 Release date: 2023-03-22 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.57 Å) Cite: Structure and mechanism of the plant RNA polymerase V. Science, 379, 2023
8H3W	Crystal structure of chicken egg lysozyme at ambient temperature Descriptor: Lysozyme C Authors: DeMirci, H. Deposit date: 2022-10-09 Release date: 2023-03-22 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (2.39 Å) Cite: Rapid and efficient ambient temperature X-ray crystal structure determination at Turkish Light Source. Sci Rep, 13, 2023
8HLA	Heteromeric ring comprised of peroxiredoxin from Thermococcus kodakaraensis (TkPrx) F42C/C46S/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F42C) and TkPrx C46S/F76C/C205S/C211S mutant modified with 2-(bromoacetyl)naphthalene (Naph@TkPrx*F76C) (Naph@(MIX|3:3)) Descriptor: 1-naphthalen-2-ylethanone, Peroxiredoxin Authors: Himiyama, T, Hamaguchi, T, Yonekura, K, Nakamura, T. Deposit date: 2022-11-29 Release date: 2023-03-22 Last modified: 2023-12-13 Method: ELECTRON MICROSCOPY (2.81 Å) Cite: Unnaturally Distorted Hexagonal Protein Ring Alternatingly Reorganized from Two Distinct Chemically Modified Proteins. Bioconjug.Chem., 2023
8HIM	A cryo-EM structure of B. oleracea RNA polymerase V elongation complex at 2.73 Angstrom Descriptor: DNA (34-MER), DNA-directed RNA polymerase IV and V subunit 2, DNA-directed RNA polymerase V largest subunit, ... Authors: Hu, H, Xie, G, Du, X, Du, J. Deposit date: 2022-11-21 Release date: 2023-03-22 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: Structure and mechanism of the plant RNA polymerase V. Science, 379, 2023
8HCT	Crystal structure of Cu2+ binding to Dendrorhynchus zhejiangensis ferritin Descriptor: COPPER (II) ION, FE (III) ION, Ferritin, ... Authors: Ming, T.H, Su, X.R, Huo, C.H. Deposit date: 2022-11-03 Release date: 2023-03-29 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Structural and Biochemical Characterization of Silver/Copper Binding by Dendrorhynchus zhejiangensis Ferritin. Polymers (Basel), 15, 2023
8H02	Crystal structure of Synechococcus elongatus PCC 7942 RNA polymerase SI3-tail Descriptor: DNA-directed RNA polymerase subunit beta' Authors: Shen, L.Q, Zhang, Y. Deposit date: 2022-09-27 Release date: 2023-04-19 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.552 Å) Cite: An SI3-sigma arch stabilizes cyanobacteria transcription initiation complex. Proc.Natl.Acad.Sci.USA, 120, 2023
8H1C	Cryo-EM structure of Oryza sativa plastid glycyl-tRNA synthetase in complex with two tRNAs (one in tRNA binding state and the other in tRNA locked state) Descriptor: Glycine--tRNA ligase, tRNA(gly) (74-MER) Authors: Yu, Z, Wu, Z, Li, Y, Lu, G, Lin, J. Deposit date: 2022-10-02 Release date: 2023-04-26 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: Structural basis of a two-step tRNA recognition mechanism for plastid glycyl-tRNA synthetase. Nucleic Acids Res., 51, 2023
8HC1	CryoEM structure of Helicobacter pylori UreFD/urease complex Descriptor: Urease accessory protein UreF, Urease accessory protein UreH, Urease subunit alpha, ... Authors: Nim, Y.S, Fong, I.Y.H, Deme, J, Tsang, K.L, Caesar, J, Johnson, S, Wong, K.B, Lea, S.M. Deposit date: 2022-11-01 Release date: 2023-05-03 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.3 Å) Cite: Delivering a toxic metal to the active site of urease. Sci Adv, 9, 2023
8H9I	Human ATP synthase F1 domain, state2 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit O, ... Authors: Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z. Deposit date: 2022-10-25 Release date: 2023-05-31 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.77 Å) Cite: Structure of the human ATP synthase. Mol.Cell, 83, 2023
8HP8	Crystal Structure of Engineered Endolysin EC340 derived from Gram-Negative Bacteria targeted Bacteriophage Descriptor: Endolysin mtEC340M Authors: Wang, J.M, Yoon, W.S, Seo, M.D. Deposit date: 2022-12-12 Release date: 2023-05-17 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.397 Å) Cite: Crystal structure of the engineered endolysin mtEC340M. Acta Crystallogr.,Sect.F, 79, 2023
8H9Q	Human ATP synthase state 3b subregion 3 Descriptor: ATP synthase F(0) complex subunit B1, mitochondrial, ATP synthase F(0) complex subunit C1, ... Authors: Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z. Deposit date: 2022-10-25 Release date: 2023-05-31 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.47 Å) Cite: Structure of the human ATP synthase. Mol.Cell, 83, 2023
8HCN	CryoEM Structure of Klebsiella pneumoniae UreD/urease complex Descriptor: Urease accessory protein UreD, Urease subunit alpha, Urease subunit beta, ... Authors: Nim, Y.S, Fong, I.Y.H, Deme, J, Tsang, K.L, Caesar, J, Johnson, S, Wong, K.B, Lea, S.M. Deposit date: 2022-11-02 Release date: 2023-05-03 Last modified: 2024-06-19 Method: ELECTRON MICROSCOPY (2.7 Å) Cite: Delivering a toxic metal to the active site of urease. Sci Adv, 9, 2023
8H9P	Human ATP synthase F1 domain, state 3b Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit O, ... Authors: Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z. Deposit date: 2022-10-25 Release date: 2023-05-31 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.02 Å) Cite: Structure of the human ATP synthase. Mol.Cell, 83, 2023
8HCR	Cryo-EM structure of the Mycobacterium tuberculosis cytochrome bcc:aa3 supercomplex and a novel inhibitor targeting subunit cytochrome cI Descriptor: CYTOCHROME AA3 SUBUNIT CtaC, CYTOCHROME AA3 SUBUNIT CtaJ, Cytochrome bc1 complex Rieske iron-sulfur subunit, ... Authors: Mathiyazakan, V, Gruber, G. Deposit date: 2022-11-02 Release date: 2023-05-03 Last modified: 2023-09-13 Method: ELECTRON MICROSCOPY Cite: Cryo-Electron Microscopy Structure of the Mycobacterium tuberculosi s Cytochrome bcc : aa 3 Supercomplex and a Novel Inhibitor Targeting Subunit Cytochrome c I. Antimicrob.Agents Chemother., 67, 2023
8H9M	Human ATP synthase state 3a subregion 3 Descriptor: ATP synthase F(0) complex subunit B1, mitochondrial, ATP synthase F(0) complex subunit C1, ... Authors: Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z. Deposit date: 2022-10-25 Release date: 2023-05-31 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3 Å) Cite: Structure of the human ATP synthase. Mol.Cell, 83, 2023
8H9E	Human ATP synthase F1 domain, state 1 Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit O, ... Authors: Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z. Deposit date: 2022-10-25 Release date: 2023-05-31 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.53 Å) Cite: Structure of the human ATP synthase. Mol.Cell, 83, 2023
8H9L	Human ATP synthase F1 domain, state 3a Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase subunit O, ... Authors: Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z. Deposit date: 2022-10-25 Release date: 2023-05-31 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.61 Å) Cite: Structure of the human ATP synthase. Mol.Cell, 83, 2023
8H9J	Human ATP synthase state2 subregion 3 Descriptor: ATP synthase F(0) complex subunit B1, mitochondrial, ATP synthase F(0) complex subunit C1, ... Authors: Lai, Y, Zhang, Y, Liu, F, Gao, Y, Gong, H, Rao, Z. Deposit date: 2022-10-25 Release date: 2023-05-31 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.26 Å) Cite: Structure of the human ATP synthase. Mol.Cell, 83, 2023
8H0F	Crystal structure of collagen heterotrimer with KD,ER and KE axial pairs Descriptor: collagen-like peptide chain A, collagen-like peptide chain B, collagen-like peptide chain C Authors: Fan, S. Deposit date: 2022-09-28 Release date: 2023-07-12 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Stability of collagen heterotrimer with same charge pattern and different charged residue identities. Biophys.J., 122, 2023
8H0E	Crystal structure of collagen heterotrimer with KD, ER and KE axial pairs Descriptor: collagen-like peptide chain A, collagen-like peptide chain B, collagen-like peptide chain C Authors: Fan, S. Deposit date: 2022-09-28 Release date: 2023-07-12 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.76 Å) Cite: Stability of collagen heterotrimer with same charge pattern and different charged residue identities. Biophys.J., 122, 2023
8HH2	F1 domain of FoF1-ATPase from Bacillus PS3,post-hyd,highATP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... Authors: Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-11-16 Release date: 2023-07-19 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3 Å) Cite: Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
8HHC	F1 domain of FoF1-ATPase from Bacillus PS3,post-hyd',lowATP Descriptor: ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ATP synthase subunit alpha, ... Authors: Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-11-16 Release date: 2023-07-19 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published
8HHB	F1 domain of FoF1-ATPase from Bacillus PS3,step waiting,lowATP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, ATP synthase gamma chain, ... Authors: Nakano, A, Kishikawa, J, Mitsuoka, K, Yokoyama, K. Deposit date: 2022-11-16 Release date: 2023-07-19 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (3.5 Å) Cite: Rotation mechanism of ATP synthases driven by ATP hydrolysis To Be Published

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