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3FCS
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BU of 3fcs by Molmil
Structure of complete ectodomain of integrin aIIBb3
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Zhu, J, Luo, B.-H, Xiao, T, Zhang, C, Nishida, N, Springer, T.A.
Deposit date:2008-11-22
Release date:2009-01-20
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structure of a complete integrin ectodomain in a physiologic resting state and activation and deactivation by applied forces.
Mol.Cell, 32, 2008
5VHZ
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BU of 5vhz by Molmil
GluA2-2xGSG1L bound to L-Quisqualate
Descriptor: (S)-2-AMINO-3-(3,5-DIOXO-[1,2,4]OXADIAZOLIDIN-2-YL)-PROPIONIC ACID, Glutamate receptor 2,Germ cell-specific gene 1-like protein
Authors:Twomey, E.C, Yelshanskaya, M.V, Grassucci, R.A, Frank, J, Sobolevsky, A.I.
Deposit date:2017-04-13
Release date:2017-05-03
Last modified:2017-11-08
Method:ELECTRON MICROSCOPY (8.4 Å)
Cite:Structural Bases of Desensitization in AMPA Receptor-Auxiliary Subunit Complexes.
Neuron, 94, 2017
6NEE
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BU of 6nee by Molmil
Crystal structure of a reconstructed ancestor of Triosephosphate isomerase from eukaryotes
Descriptor: PHOSPHOGLYCOLOHYDROXAMIC ACID, TRIOSEPHOSPHATE ISOMERASE
Authors:Rodriguez-Romero, A, Schulte-Sasse, M, Fernandez-Velasco, D.A.
Deposit date:2018-12-17
Release date:2019-01-09
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structural, thermodynamic and catalytic characterization of an ancestral triosephosphate isomerase reveal early evolutionary coupling between monomer association and function.
FEBS J., 286, 2019
3QHN
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BU of 3qhn by Molmil
Crystal analysis of the complex structure, E201A-cellotetraose, of endocellulase from pyrococcus horikoshii
Descriptor: 458aa long hypothetical endo-1,4-beta-glucanase, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose, beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose
Authors:Kim, H.-W, Ishikawa, K.
Deposit date:2011-01-26
Release date:2012-02-01
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Functional analysis of hyperthermophilic endocellulase from Pyrococcus horikoshii by crystallographic snapshots
Biochem.J., 437, 2011
2O5Y
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BU of 2o5y by Molmil
Crystal structure of the 1E9 LeuH47Trp/ArgH100Trp Fab progesterone complex
Descriptor: PROGESTERONE, SULFATE ION, chimeric antibody Fab 1E9-DB3
Authors:Verdino, P, Wilson, I.A.
Deposit date:2006-12-06
Release date:2007-12-18
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Closely related antibody receptors exploit fundamentally different strategies for steroid recognition.
Proc.Natl.Acad.Sci.Usa, 105, 2008
2KKJ
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BU of 2kkj by Molmil
Solution structure of the Nuclear coactivator binding domain of CBP
Descriptor: CREB-binding protein
Authors:Kjaergaard, M, Teilum, K, Poulsen, F.M.
Deposit date:2009-06-24
Release date:2010-06-30
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Conformational selection in the molten globule state of the nuclear coactivator binding domain of CBP
Proc.Natl.Acad.Sci.USA, 107, 2010
1FT7
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BU of 1ft7 by Molmil
AAP COMPLEXED WITH L-LEUCINEPHOSPHONIC ACID
Descriptor: BACTERIAL LEUCYL AMINOPEPTIDASE, LEUCINE PHOSPHONIC ACID, POTASSIUM ION, ...
Authors:Stamper, C, Bennett, B, Holz, R, Petsko, G, Ringe, D.
Deposit date:2000-09-11
Release date:2000-10-04
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Inhibition of the aminopeptidase from Aeromonas proteolytica by L-leucinephosphonic acid. Spectroscopic and crystallographic characterization of the transition state of peptide hydrolysis.
Biochemistry, 40, 2001
2W3T
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BU of 2w3t by Molmil
Chloro complex of the Ni-Form of E.coli deformylase
Descriptor: CHLORIDE ION, ETHANOL, NICKEL (II) ION, ...
Authors:Ngo, Y.H.T, Palm, G.J, Hinrichs, W.
Deposit date:2008-11-14
Release date:2009-12-15
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Structure of the Ni(II) Complex of Escherichia Coli Peptide Deformylase and Suggestions on Deformylase Activities Depending on Different Metal(II) Centres.
J.Biol.Inorg.Chem., 15, 2010
2O5X
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BU of 2o5x by Molmil
Crystal structure of 1E9 LeuH47Trp/ArgH100Trp, an engineered Diels-Alderase Fab with nM steroid-binding affinity
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, SULFATE ION, chimeric antibody Fab 1E9-DB3
Authors:Verdino, P, Wilson, I.A.
Deposit date:2006-12-06
Release date:2007-12-18
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Closely related antibody receptors exploit fundamentally different strategies for steroid recognition.
Proc.Natl.Acad.Sci.Usa, 105, 2008
8HB2
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BU of 8hb2 by Molmil
Crystal structure of Caenorhabditis elegans NMAD-1 in complex with ligand II
Descriptor: 2-OXOGLUTARIC ACID, DNA N6-methyl adenine demethylase, MANGANESE (II) ION
Authors:Shang, G, Chen, Z.
Deposit date:2022-10-27
Release date:2024-02-07
Method:X-RAY DIFFRACTION (3.06 Å)
Cite:Structural Basis of Nucleic Acid Recognition and 6mA Demethylation by Caenorhabditis elegans NMAD-1A.
Int J Mol Sci, 25, 2024
8HBB
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BU of 8hbb by Molmil
Crystal structure of Caenorhabditis elegans NMAD-1 in complex with ligand III
Descriptor: CHLORIDE ION, DNA N6-methyl adenine demethylase, MANGANESE (II) ION
Authors:Shang, G, Chen, Z.
Deposit date:2022-10-27
Release date:2024-02-07
Method:X-RAY DIFFRACTION (3.09 Å)
Cite:Structural Basis of Nucleic Acid Recognition and 6mA Demethylation by Caenorhabditis elegans NMAD-1A.
Int J Mol Sci, 25, 2024
8HAZ
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BU of 8haz by Molmil
Crystal structure of Caenorhabditis elegans NMAD-1 in complex with ligand I
Descriptor: DNA N6-methyl adenine demethylase, SULFATE ION
Authors:Shang, G, Chen, Z.
Deposit date:2022-10-27
Release date:2024-02-07
Method:X-RAY DIFFRACTION (2.66 Å)
Cite:Structural Basis of Nucleic Acid Recognition and 6mA Demethylation by Caenorhabditis elegans NMAD-1A.
Int J Mol Sci, 25, 2024
6WHY
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BU of 6why by Molmil
GluN1b-GluN2B NMDA receptor in complex with GluN1 antagonist L689,560, class 1
Descriptor: (2R,4S)-5,7-dichloro-4-[(phenylcarbamoyl)amino]-1,2,3,4-tetrahydroquinoline-2-carboxylic acid, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
Authors:Chou, T, Tajima, N, Furukawa, H.
Deposit date:2020-04-08
Release date:2020-07-15
Last modified:2020-08-05
Method:ELECTRON MICROSCOPY (4.03 Å)
Cite:Structural Basis of Functional Transitions in Mammalian NMDA Receptors.
Cell, 182, 2020
5EH5
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BU of 5eh5 by Molmil
human carbonic anhydrase II in complex with ligand
Descriptor: 1.7.6 4-methylpyrimidine-2-sulfonamide, Carbonic anhydrase 2, FORMIC ACID, ...
Authors:Ren, B.
Deposit date:2015-10-28
Release date:2016-03-09
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.207 Å)
Cite:Native State Mass Spectrometry, Surface Plasmon Resonance, and X-ray Crystallography Correlate Strongly as a Fragment Screening Combination.
J.Med.Chem., 59, 2016
2VWH
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BU of 2vwh by Molmil
Haloferax mediterranei glucose dehydrogenase in complex with NADP, Zn and glucose.
Descriptor: GLUCOSE DEHYDROGENASE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ZINC ION, ...
Authors:Baker, P.J, Britton, K.L, Fisher, M, Esclapez, J, Pire, C, Bonete, M.J, Ferrer, J, Rice, D.W.
Deposit date:2008-06-24
Release date:2009-01-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.03 Å)
Cite:Active site dynamics in the zinc-dependent medium chain alcohol dehydrogenase superfamily.
Proc. Natl. Acad. Sci. U.S.A., 106, 2009
6TNT
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BU of 6tnt by Molmil
SUMOylated apoAPC/C with repositioned APC2 WHB domain
Descriptor: Anaphase-promoting complex subunit 1, Anaphase-promoting complex subunit 10, Anaphase-promoting complex subunit 11, ...
Authors:Barford, D, Yatskevich, S.
Deposit date:2019-12-10
Release date:2021-01-13
Last modified:2021-07-28
Method:ELECTRON MICROSCOPY (3.78 Å)
Cite:Molecular mechanisms of APC/C release from spindle assembly checkpoint inhibition by APC/C SUMOylation.
Cell Rep, 34, 2021
4Q93
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BU of 4q93 by Molmil
Crystal structure of resveratrol bound human tyrosyl tRNA synthetase
Descriptor: CHLORIDE ION, GLYCEROL, PHOSPHATE ION, ...
Authors:Mathew, S, Schimmel, P.
Deposit date:2014-04-28
Release date:2014-12-17
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:A human tRNA synthetase is a potent PARP1-activating effector target for resveratrol.
Nature, 519, 2014
2VWG
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BU of 2vwg by Molmil
Haloferax mediterranei glucose dehydrogenase in complex with NADP, Zn and gluconolactone.
Descriptor: D-glucono-1,5-lactone, GLUCOSE DEHYDROGENASE, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Baker, P.J, Britton, K.L, Fisher, M, Esclapez, J, Pire, C, Bonete, M.J, Ferrer, J, Rice, D.W.
Deposit date:2008-06-24
Release date:2009-01-13
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2 Å)
Cite:Active site dynamics in the zinc-dependent medium chain alcohol dehydrogenase superfamily.
Proc. Natl. Acad. Sci. U.S.A., 106, 2009
6QRZ
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BU of 6qrz by Molmil
Crystal structure of R2-like ligand-binding oxidase from Sulfolobus acidocaldarius solved by 3D micro-crystal electron diffraction
Descriptor: FE (III) ION, MANGANESE (III) ION, Ribonucleoside-diphosphate reductase
Authors:Xu, H, Lebrette, H, Clabbers, M.T.B, Zhao, J, Griese, J.J, Zou, X, Hogbom, M.
Deposit date:2019-02-20
Release date:2019-04-24
Last modified:2024-05-15
Method:ELECTRON CRYSTALLOGRAPHY (3 Å)
Cite:Solving a new R2lox protein structure by microcrystal electron diffraction.
Sci Adv, 5, 2019
6WRN
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BU of 6wrn by Molmil
Crystal structure of Mj 3-nitro-tyrosine tRNA synthetase (5B) C70A variant bound to 3-nitro-tyrosine
Descriptor: META-NITRO-TYROSINE, SODIUM ION, Tyrosine--tRNA ligase
Authors:Beyer, J.N, Hosseinzadeh, P, Karplus, P.A, Mehl, R.A, Cooley, R.B.
Deposit date:2020-04-29
Release date:2020-07-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Overcoming Near-Cognate Suppression in a Release Factor 1-Deficient Host with an Improved Nitro-Tyrosine tRNA Synthetase.
J.Mol.Biol., 432, 2020
8IJC
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BU of 8ijc by Molmil
NMR solution structure of the 1:1 complex of a platinum(II) ligand L1-transpt covalently bound to a G-quadruplex MYT1L
Descriptor: G-quadruplex DNA MYT1L, Pt(NH3)2(2-(pyridin-4-ylmethyl)benzo-[lmn][3,8]phenanthroline-1,3,6,8(2H,7H)-tetraone)
Authors:Liu, L.-Y, Mao, Z.-W.
Deposit date:2023-02-27
Release date:2023-06-28
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Organic-Platinum Hybrids for Covalent Binding of G-Quadruplexes: Structural Basis and Application to Cancer Immunotherapy.
Angew.Chem.Int.Ed.Engl., 62, 2023
8ICD
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BU of 8icd by Molmil
REGULATION OF AN ENZYME BY PHOSPHORYLATION AT THE ACTIVE SITE
Descriptor: ISOCITRATE DEHYDROGENASE, ISOCITRIC ACID, MAGNESIUM ION
Authors:Hurley, J.H, Dean, A.M, Sohl, J.L, Koshlandjunior, D.E, Stroud, R.M.
Deposit date:1990-05-30
Release date:1991-10-15
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Regulation of an enzyme by phosphorylation at the active site.
Science, 249, 1990
6WRQ
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BU of 6wrq by Molmil
Crystal structure of Mj 3-nitro-tyrosine tRNA synthetase (5B) S158C variant bound to 3-nitro-tyrosine
Descriptor: GLYCEROL, META-NITRO-TYROSINE, SODIUM ION, ...
Authors:Beyer, J.N, Hosseinzadeh, P, Karplus, P.A, Mehl, R.A, Cooley, R.B.
Deposit date:2020-04-29
Release date:2020-07-01
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Overcoming Near-Cognate Suppression in a Release Factor 1-Deficient Host with an Improved Nitro-Tyrosine tRNA Synthetase.
J.Mol.Biol., 432, 2020
8HYE
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BU of 8hye by Molmil
Structure of amino acid dehydrogenase-2752 with ligand
Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Alanine dehydrogenase, ...
Authors:Sakuraba, H, Ohshima, T.
Deposit date:2023-01-06
Release date:2023-04-05
Last modified:2024-05-29
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Two different alanine dehydrogenases from Geobacillus kaustophilus: Their biochemical characteristics and differential expression in vegetative cells and spores.
Biochim Biophys Acta Proteins Proteom, 1871, 2023
1YID
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BU of 1yid by Molmil
Crystal structure of tryptophanyl tRNA synthetase II from Deinococcus radiodurans in complex with ATP.
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, tryptophanyl-tRNA synthetase
Authors:Buddha, M.R, Crane, B.R.
Deposit date:2005-01-11
Release date:2005-08-02
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structures of tryptophanyl-tRNA synthetase II from Deinococcus radiodurans bound to ATP and tryptophan. Insight into subunit cooperativity and domain motions linked to catalysis
J.Biol.Chem., 280, 2005

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