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3E54	Archaeal Intron-encoded Homing Endonuclease I-Vdi141I Complexed With DNA Descriptor: DNA (5'-D(*DCP*DTP*DGP*DAP*DCP*DTP*DCP*DTP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(*DTP*DTP*DGP*DGP*DCP*DTP*DAP*DCP*DCP*DTP*DTP*DAP*DA)-3'), DNA (5'-D(P*DGP*DAP*DGP*DAP*DGP*DTP*DCP*DAP*DG)-3'), ... Authors: Nomura, N, Nomura, Y, Sussman, D, Stoddard, B.L. Deposit date: 2008-08-13 Release date: 2008-12-30 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Recognition of a common rDNA target site in archaea and eukarya by analogous LAGLIDADG and His-Cys box homing endonucleases Nucleic Acids Res., 36, 2008
4M0A	Human DNA Polymerase Mu post-catalytic complex Descriptor: 1,2-ETHANEDIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DNA-directed DNA/RNA polymerase mu, ... Authors: Moon, A.F, Pryor, J.M, Ramsden, D.A, Kunkel, T.A, Bebenek, K, Pedersen, L.C. Deposit date: 2013-08-01 Release date: 2014-02-05 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Sustained active site rigidity during synthesis by human DNA polymerase mu. Nat.Struct.Mol.Biol., 21, 2014
1TN9	THE SOLUTION STRUCTURE OF TN916 INTEGRASE N-TERMINAL DOMAIN/DNA COMPLEX Descriptor: DNA (5'-D(*GP*AP*AP*TP*TP*TP*AP*CP*TP*AP*CP*TP*C)-3'), DNA (5'-D(*GP*AP*GP*TP*AP*GP*TP*AP*AP*AP*TP*TP*C)-3'), PROTEIN (INTEGRASE) Authors: Clubb, R.T, Wojciak, J.M, Connolly, K.M. Deposit date: 1999-01-21 Release date: 1999-09-29 Last modified: 2023-12-27 Method: SOLUTION NMR Cite: NMR structure of the Tn916 integrase-DNA complex. Nat.Struct.Biol., 6, 1999
4G4N	MutM containing M77A mutation bound to undamaged DNA Descriptor: DNA (5'-D(*TP*GP*CP*GP*TP*CP*CP*GP*AP*GP*(TX2)P*CP*TP*AP*CP*C)-3'), DNA (5'-D(P*AP*GP*GP*TP*AP*GP*AP*CP*TP*CP*GP*GP*AP*CP*GP*C)-3'), Formamidopyrimidine-DNA glycosylase, ... Authors: Sung, R.J, Zhang, M, Qi, Y, Verdine, G.L. Deposit date: 2012-07-16 Release date: 2013-02-20 Last modified: 2013-11-20 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural and Biochemical Analysis of DNA Helix Invasion by the Bacterial 8-Oxoguanine DNA Glycosylase MutM. J.Biol.Chem., 288, 2013
6J5B	Structural basis for the target DNA recognition and binding by the MYB domain of phosphate starvation response regulator 1 Descriptor: DNA (5'-D(*GP*GP*TP*AP*CP*AP*GP*TP*AP*TP*AP*TP*AP*CP*CP*AP*TP*AP*AP*A)-3'), DNA (5'-D(*TP*TP*TP*AP*TP*GP*GP*TP*AP*TP*AP*TP*AP*CP*TP*GP*TP*AP*CP*C)-3'), Protein PHOSPHATE STARVATION RESPONSE 1 Authors: Jiang, M.Q, Sun, L.F, Isupov, M.N, Wu, Y.K. Deposit date: 2019-01-10 Release date: 2019-04-24 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural basis for the Target DNA recognition and binding by the MYB domain of phosphate starvation response 1. Febs J., 286, 2019
1ZQV	DNA POLYMERASE BETA (POL B) (E.C.2.7.7.7), 31-KD DOMAIN; SOAKED IN THE PRESENCE OF CACL2 (150 MILLIMOLAR) Descriptor: CALCIUM ION, DNA POLYMERASE BETA Authors: Pelletier, H, Sawaya, M.R. Deposit date: 1996-04-19 Release date: 1996-11-15 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Characterization of the metal ion binding helix-hairpin-helix motifs in human DNA polymerase beta by X-ray structural analysis. Biochemistry, 35, 1996
2F5N	MutM crosslinked to undamaged DNA sampling A:T base pair IC1 Descriptor: 5'-D(*AP*GP*GP*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*C*GP*TP*CP*CP*AP*GP*GP*TP*CP*TP*AP*CP*C)-3', GLYCEROL, ... Authors: Banerjee, A, Santos, W.L, Verdine, G.L. Deposit date: 2005-11-26 Release date: 2006-03-07 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure of a DNA glycosylase searching for lesions. Science, 311, 2006
5KT2	Teranry complex of human DNA polymerase iota(26-445) inserting dCMPNPP opposite template G in the presence of Mg2+ Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ... Authors: Choi, J.Y, Patra, A, Yeom, M, Lee, Y.S, Zhang, Q, Egli, M, Guengerich, F.P. Deposit date: 2016-07-11 Release date: 2016-08-31 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.488 Å) Cite: Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota. J.Biol.Chem., 291, 2016
5KT7	Teranry complex of human DNA polymerase iota(1-445) inserting dCMPNPP opposite template G in the presence of Mn2+ Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(P*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'), ... Authors: Choi, J.Y, Patra, A, Yeom, M, Lee, Y.S, Zhang, Q, Egli, M, Guengerich, F.P. Deposit date: 2016-07-11 Release date: 2016-08-31 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3.151 Å) Cite: Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota. J.Biol.Chem., 291, 2016
5KT3	Teranry complex of human DNA polymerase iota(26-445) inserting dCMPNPP opposite template G in the presence of Mn2+ Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ... Authors: Choi, J.Y, Patra, A, Yeom, M, Lee, Y.S, Zhang, Q, Egli, M, Guengerich, F.P. Deposit date: 2016-07-11 Release date: 2016-08-31 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.64 Å) Cite: Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota. J.Biol.Chem., 291, 2016
3DNB	HELIX GEOMETRY, HYDRATION, AND G.A MISMATCH IN A B-DNA DECAMER Descriptor: DNA (5'-D(*CP*CP*AP*AP*GP*AP*TP*TP*GP*G)-3'), MAGNESIUM ION Authors: Prive, G.G, Dickerson, R.E. Deposit date: 1988-03-18 Release date: 1989-01-09 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (1.3 Å) Cite: Structure of the B-DNA decamer C-C-A-A-C-G-T-T-G-G and comparison with isomorphous decamers C-C-A-A-G-A-T-T-G-G and C-C-A-G-G-C-C-T-G-G. J.Mol.Biol., 217, 1991
5KT6	Teranry complex of human DNA polymerase iota(1-445) inserting dCMPNPP opposite template G in the presence of Mg2+ Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), DNA (5'-D(P*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'), ... Authors: Choi, J.Y, Patra, A, Yeom, M, Lee, Y.S, Zhang, Q, Egli, M, Guengerich, F.P. Deposit date: 2016-07-11 Release date: 2016-08-31 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (3.54 Å) Cite: Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota. J.Biol.Chem., 291, 2016
8APM	Vaccinia virus DNA helicase D5 residues 323-785 hexamer with bound DNA processed in C1 Descriptor: DNA (5'-D(P*CP*CP*GP*AP*AP*TP*CP*A)-3'), DNA (5'-D(P*TP*GP*AP*TP*TP*CP*GP*G)-3'), Primase D5 Authors: Burmeister, W.P, Hutin, S, Ling, W.L, Grimm, C, Schoehn, G. Deposit date: 2022-08-10 Release date: 2022-11-09 Last modified: 2023-08-16 Method: ELECTRON MICROSCOPY (6.6 Å) Cite: The Vaccinia Virus DNA Helicase Structure from Combined Single-Particle Cryo-Electron Microscopy and AlphaFold2 Prediction. Viruses, 14, 2022
2FCC	Crystal Structure of T4 Pyrimidine Dimer Glycosylase (T4-Pdg) Covalently Complexed with a DNA Substrate Containing Abasic Site Descriptor: DNA (5'-D(*CP*CP*AP*GP*GP*AP*(PED)P*GP*AP*AP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*(BRU)P*(BRU)P*CP*AP*(BRU)P*CP*CP*(BRU)P*GP*G)-3'), Endonuclease V, ... Authors: Golan, G, Zharkov, D.O, Fernandes, A.S, Dodson, M.L, McCullough, A.K, Grollman, A.P, Lloyd, R.S, Shoham, G. Deposit date: 2005-12-12 Release date: 2006-10-03 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Structure of T4 Pyrimidine Dimer Glycosylase in a Reduced Imine Covalent Complex with Abasic Site-containing DNA. J.Mol.Biol., 362, 2006
2F5Q	Catalytically inactive (E3Q) MutM crosslinked to oxoG:C containing DNA CC2 Descriptor: 5'-D(*AP*GP*G*TP*AP*GP*AP*CP*CP*TP*GP*GP*AP*CP*GP*C)-3', 5'-D(*TP*GP*CP*G*TP*CP*CP*AP*(8OG)P*GP*TP*CP*TP*AP*CP*C)-3', ZINC ION, ... Authors: Banerjee, A, Santos, W.L, Verdine, G.L. Deposit date: 2005-11-26 Release date: 2006-03-07 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.35 Å) Cite: Structure of a DNA glycosylase searching for lesions. Science, 311, 2006
5KT4	Teranry complex of human DNA polymerase iota R96G inserting dCMPNPP opposite template G in the presence of Mg2+ Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ... Authors: Choi, J.Y, Patra, A, Yeom, M, Lee, Y.S, Zhang, Q, Egli, M, Guengerich, F.P. Deposit date: 2016-07-11 Release date: 2016-08-31 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.78 Å) Cite: Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota. J.Biol.Chem., 291, 2016
6QIB	The crystal structure of Pol2CORE in complex with DNA and an incoming nucleotide, carrying an Fe-S cluster Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, CALCIUM ION, DNA polymerase epsilon catalytic subunit A, ... Authors: Parkash, V, Johansson, E. Deposit date: 2019-01-18 Release date: 2019-04-17 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural evidence for an essential Fe-S cluster in the catalytic core domain of DNA polymerase ε. Nucleic Acids Res., 47, 2019
2MF8	HADDOCK model of MyT1 F4F5 - DNA complex Descriptor: DNA (5'-D(*AP*CP*CP*GP*AP*AP*AP*GP*TP*TP*CP*AP*C)-3'), DNA (5'-D(*GP*TP*GP*AP*AP*CP*TP*TP*TP*CP*GP*GP*T)-3'), Myelin transcription factor 1, ... Authors: Gamsjaeger, R, O'Connell, M.R, Cubeddu, L, Shepherd, N.E, Lowry, J.A, Kwan, A.H, Vandevenne, M, Swanton, M.K, Matthews, J.M, Mackay, J.P. Deposit date: 2013-10-08 Release date: 2013-11-06 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: A structural analysis of DNA binding by myelin transcription factor 1 double zinc fingers. J.Biol.Chem., 288, 2013
1VTI	DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURES OF D(TGATCA) COMPLEXED WITH DAUNOMYCIN Descriptor: DAUNOMYCIN, DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') Authors: Nunn, C.M, Van Meervelt, L, Zhang, S, Moore, M.H, Kennard, O. Deposit date: 1992-03-01 Release date: 2011-07-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.7 Å) Cite: DNA-Drug Interactions: The Crystal Structures of d(TGTACA) and d(TGATCA) Complexed with Daunomycin J.Mol.Biol., 222, 1991
3SQ7	Crystal Structure Analysis of the Yeast Tyrosyl-DNA Phosphodiesterase H432N_Glu Mutant Descriptor: SULFATE ION, Tyrosyl-DNA phosphodiesterase 1 Authors: Gajewski, S, White, S.W. Deposit date: 2011-07-05 Release date: 2011-12-28 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2 Å) Cite: Analysis of the active-site mechanism of tyrosyl-DNA phosphodiesterase I: a member of the phospholipase D superfamily. J.Mol.Biol., 415, 2012
5KT5	Teranry complex of human DNA polymerase iota R96G inserting dCMPNPP opposite template G in the presence of Mn2+ Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*CP*TP*GP*GP*GP*GP*TP*CP*CP*T)-3'), DNA (5'-D(P*AP*GP*GP*AP*CP*CP*C)-3'), ... Authors: Choi, J.Y, Patra, A, Yeom, M, Lee, Y.S, Zhang, Q, Egli, M, Guengerich, F.P. Deposit date: 2016-07-11 Release date: 2016-08-31 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.798 Å) Cite: Kinetic and Structural Impact of Metal Ions and Genetic Variations on Human DNA Polymerase iota. J.Biol.Chem., 291, 2016
1VTH	DNA-DRUG INTERACTIONS: THE CRYSTAL STRUCTURES OF D(TGTACA) COMPLEXED WITH DAUNOMYCIN Descriptor: DAUNOMYCIN, DNA (5'-D(*TP*GP*TP*AP*CP*A)-3') Authors: Nunn, C.M, Van Meervelt, L, Zhang, S, Moore, M.H, Kennard, O. Deposit date: 1992-03-01 Release date: 2011-07-13 Last modified: 2023-12-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: DNA-Drug Interactions: The Crystal Structures of d(TGTACA) and d(TGATCA) Complexed with Daunomycin J.Mol.Biol., 222, 1991
4O3R	Crystal structure of human polymerase eta extending an 8-oxog dna lesion: post insertion of 8-oxog-da pair Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*A)-3'), DNA (5'-D(*CP*AP*TP*GP*(8OG)P*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Patra, A, Egli, M. Deposit date: 2013-12-18 Release date: 2014-04-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.62 Å) Cite: Kinetics, Structure, and Mechanism of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Bypass by Human DNA Polymerase eta J.Biol.Chem., 289, 2014
7JSI	Adeno-Associated Virus 2 Rep68 HD Hexamer-ssDNA with ATPgS Descriptor: DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*T)-3'), Protein Rep68 Authors: Escalante, C.R. Deposit date: 2020-08-14 Release date: 2020-12-16 Last modified: 2024-03-06 Method: ELECTRON MICROSCOPY (5.01 Å) Cite: The Cryo-EM structure of AAV2 Rep68 in complex with ssDNA reveals a malleable AAA+ machine that can switch between oligomeric states. Nucleic Acids Res., 48, 2020
4O3P	Crystal structure of human polymerase eta inserting dctp opposite an 8-oxog containing dna template Descriptor: 2'-deoxy-5'-O-[(R)-hydroxy{[(R)-hydroxy(phosphonooxy)phosphoryl]amino}phosphoryl]cytidine, DNA (5'-D(*AP*GP*CP*GP*TP*CP*AP*T)-3'), DNA (5'-D(*CP*AP*TP*(8OG)P*AP*TP*GP*AP*CP*GP*CP*T)-3'), ... Authors: Patra, A, Egli, M. Deposit date: 2013-12-18 Release date: 2014-04-30 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.72 Å) Cite: Kinetics, Structure, and Mechanism of 8-Oxo-7,8-dihydro-2'-deoxyguanosine Bypass by Human DNA Polymerase eta J.Biol.Chem., 289, 2014

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