Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

4ERP
DownloadVisualize
BU of 4erp by Molmil
Crystal structure of a gemcitabine-diphosphate inhibited E. coli class Ia ribonucleotide reductase complex
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MU-OXO-DIIRON, Ribonucleoside-diphosphate reductase 1 subunit alpha, ...
Authors:Zimanyi, C.M, Drennan, C.L.
Deposit date:2012-04-20
Release date:2012-07-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (4.45 Å)
Cite:Tangled up in knots: structures of inactivated forms of E. coli class Ia ribonucleotide reductase.
Structure, 20, 2012
5FSI
DownloadVisualize
BU of 5fsi by Molmil
MTH1 substrate recognition: Complex with 8-oxo-dGTP.
Descriptor: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE
Authors:Nissink, J.W.M, Bista, M, Breed, J, Carter, N, Embrey, K, Read, J, Phillips, C, Winter, J.J.
Deposit date:2016-01-06
Release date:2016-07-11
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.63 Å)
Cite:Mth1 Substrate Recognition--an Example of Specific Promiscuity.
Plos One, 11, 2016
4ERM
DownloadVisualize
BU of 4erm by Molmil
Crystal structure of the dATP inhibited E. coli class Ia ribonucleotide reductase complex at 4 Angstroms resolution
Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, 2'-DEOXYADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, ...
Authors:Zimanyi, C.M, Drennan, C.L.
Deposit date:2012-04-20
Release date:2012-07-04
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (3.95 Å)
Cite:Tangled up in knots: structures of inactivated forms of E. coli class Ia ribonucleotide reductase.
Structure, 20, 2012
5FSK
DownloadVisualize
BU of 5fsk by Molmil
MTH1 substrate recognition: Complex with 8-oxo-dGTP.
Descriptor: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE, 8-OXO-ADENOSINE-5'-TRIPHOSPHATE, ACETATE ION
Authors:Nissink, J.W.M, Bista, M, Breed, J, Carter, N, Embrey, K, Read, J, Phillips, C, Winter, J.J.
Deposit date:2016-01-06
Release date:2016-07-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.56 Å)
Cite:Mth1 Substrate Recognition--an Example of Specific Promiscuity.
Plos One, 11, 2016
5FSM
DownloadVisualize
BU of 5fsm by Molmil
MTH1 substrate recognition: Complex with a methylbenzimidazolyl acetamide.
Descriptor: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE, ACETATE ION, DIMETHYL SULFOXIDE, ...
Authors:Nissink, J.W.M, Bista, M, Breed, J, Carter, N, Embrey, K, Read, J, Phillips, C, Winter, J.J.
Deposit date:2016-01-06
Release date:2016-07-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:Mth1 Substrate Recognition--an Example of Specific Promiscuity.
Plos One, 11, 2016
4B2I
DownloadVisualize
BU of 4b2i by Molmil
Humanised monomeric RadA in complex with indazole
Descriptor: 1H-indazole, DNA REPAIR AND RECOMBINATION PROTEIN RADA, PHOSPHATE ION
Authors:Scott, D.E, Ehebauer, M.T, Pukala, T, Marsh, M, Blundell, T.L, Venkitaraman, A.R, Abell, C, Hyvonen, M.
Deposit date:2012-07-16
Release date:2013-02-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Using a Fragment-Based Approach to Target Protein-Protein Interactions.
Chembiochem, 14, 2013
4B3D
DownloadVisualize
BU of 4b3d by Molmil
Humanised monomeric RadA in complex with 5-methyl indole
Descriptor: 5-METHYL INDOLE, DNA REPAIR AND RECOMBINATION PROTEIN RADA, PHOSPHATE ION
Authors:Scott, D.E, Ehebauer, M.T, Pukala, T, Marsh, M, Blundell, T.L, Venkitaraman, A.R, Abell, C, Hyvonen, M.
Deposit date:2012-07-23
Release date:2013-02-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.589 Å)
Cite:Using a Fragment-Based Approach to Target Protein-Protein Interactions.
Chembiochem, 14, 2013
2M3A
DownloadVisualize
BU of 2m3a by Molmil
NMR solution structure of a MYB-like DNA binding domain of KNL-2 from C. Elegans
Descriptor: Protein KNL-2
Authors:Osborne, M.J, Borden, L.B.
Deposit date:2013-01-15
Release date:2014-04-02
Last modified:2024-05-15
Method:SOLUTION NMR
Cite:Centromere epigenome stability is mediated by structural recognition by the Centromere Licensing Complex
To be Published
8H68
DownloadVisualize
BU of 8h68 by Molmil
Crystal structure of Caenorhabditis elegans NMAD-1 in complex with NOG and Mg(II)
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, DI(HYDROXYETHYL)ETHER, ...
Authors:Shi, Y, Ding, J, Yang, H.
Deposit date:2022-10-16
Release date:2023-02-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Caenorhabditis elegans NMAD-1 functions as a demethylase for actin.
J Mol Cell Biol, 15, 2023
5FSN
DownloadVisualize
BU of 5fsn by Molmil
MTH1 substrate recognition: Complex with a aminomethylpyrimidinyl oxypropanol.
Descriptor: 3-(2-AMINO-6-METHYL-PYRIMIDIN-4-YL)OXYPROPAN-1-OL, 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE, ACETATE ION, ...
Authors:Nissink, J.W.M, Bista, M, Breed, J, Carter, N, Embrey, K, Read, J, Phillips, C, Winter, J.J.
Deposit date:2016-01-06
Release date:2016-07-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.69 Å)
Cite:Mth1 Substrate Recognition--an Example of Specific Promiscuity.
Plos One, 11, 2016
7XYF
DownloadVisualize
BU of 7xyf by Molmil
Cryo-EM structure of Fft3-nucleosome complex with Fft3 bound to SHL+2 position of the nucleosome
Descriptor: ATP-dependent helicase fft3, DNA (167-MER), Histone H2A, ...
Authors:Nan, Z, Tao, J, Yangao, H.
Deposit date:2022-06-01
Release date:2023-12-06
Last modified:2024-06-12
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Cryo-EM structure of Fft3-nucleosome complex with Fft3 bound to SHL+2 position of the nucleosome (Class I Fft3-nucleosome complex)
To Be Published
4B34
DownloadVisualize
BU of 4b34 by Molmil
Humanised monomeric RadA in complex with 2-amino benzothiazole
Descriptor: 1,3-benzothiazol-2-amine, DNA REPAIR AND RECOMBINATION PROTEIN RADA, PHOSPHATE ION
Authors:Scott, D.E, Ehebauer, M.T, Pukala, T, Marsh, M, Blundell, T.L, Venkitaraman, A.R, Abell, C, Hyvonen, M.
Deposit date:2012-07-20
Release date:2013-02-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Using a Fragment-Based Approach to Target Protein-Protein Interactions.
Chembiochem, 14, 2013
4B33
DownloadVisualize
BU of 4b33 by Molmil
Humanised monomeric RadA in complex with napht-2-ol
Descriptor: 1-NAPHTHOL, DNA REPAIR AND RECOMBINATION PROTEIN RADA, PHOSPHATE ION
Authors:Scott, D.E, Ehebauer, M.T, Pukala, T, Marsh, M, Blundell, T.L, Venkitaraman, A.R, Abell, C, Hyvonen, M.
Deposit date:2012-07-20
Release date:2013-02-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.499 Å)
Cite:Using a Fragment-Based Approach to Target Protein-Protein Interactions.
Chembiochem, 14, 2013
7SUK
DownloadVisualize
BU of 7suk by Molmil
Structure of Bfr2-Lcp5 Complex Observed in the Small Subunit Processome Isolated from R2TP-depleted Yeast Cells
Descriptor: 18S pre-rRNA, 40S ribosomal protein S11-A, 40S ribosomal protein S13, ...
Authors:Rai, J, Zhao, Y, Li, H.
Deposit date:2021-11-17
Release date:2022-07-06
Last modified:2023-08-16
Method:ELECTRON MICROSCOPY (3.99 Å)
Cite:Artificial intelligence-assisted cryoEM structure of Bfr2-Lcp5 complex observed in the yeast small subunit processome.
Commun Biol, 5, 2022
5FSL
DownloadVisualize
BU of 5fsl by Molmil
MTH1 substrate recognition: Complex with a methylaminopurinone
Descriptor: 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE, 9-METHYL-2-(METHYLAMINO)-1H-PURIN-6-ONE, SULFATE ION
Authors:Nissink, J.W.M, Bista, M, Breed, J, Carter, N, Embrey, K, Read, J, Phillips, C, Winter, J.J.
Deposit date:2016-01-06
Release date:2016-07-20
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.24 Å)
Cite:Mth1 Substrate Recognition--an Example of Specific Promiscuity.
Plos One, 11, 2016
2O99
DownloadVisualize
BU of 2o99 by Molmil
The crystal structure of E.coli IclR C-terminal fragment in complex with glyoxylate
Descriptor: 1,2-ETHANEDIOL, Acetate operon repressor, GLYCOLIC ACID
Authors:Lunin, V.V, Ezersky, A, Evdokimova, E, Kudritska, M, Savchenko, A.
Deposit date:2006-12-13
Release date:2007-04-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Glyoxylate and Pyruvate Are Antagonistic Effectors of the Escherichia coli IclR Transcriptional Regulator.
J.Biol.Chem., 282, 2007
5FSO
DownloadVisualize
BU of 5fso by Molmil
MTH1 substrate recognition: Complex with a methylaminopyrimidinedione.
Descriptor: 6-(METHYLAMINO)-1H-PYRIMIDINE-2,4-DIONE, 7,8-DIHYDRO-8-OXOGUANINE TRIPHOSPHATASE, ACETATE ION, ...
Authors:Nissink, J.W.M, Bista, M, Breed, J, Carter, N, Embrey, K, Read, J, Phillips, C, Winter, J.J.
Deposit date:2016-01-06
Release date:2017-01-18
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (1.67 Å)
Cite:MTH1 Substrate Recognition--An Example of Specific Promiscuity.
PLoS ONE, 11, 2016
5HM5
DownloadVisualize
BU of 5hm5 by Molmil
Crystal structure of Topo-97, an N-terminal 97kDa fragment of topoisomerase V
Descriptor: Topoisomerase V
Authors:Rajan, R, Osterman, A, Mondragon, A.
Deposit date:2016-01-15
Release date:2016-03-09
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Methanopyrus kandleri topoisomerase V contains three distinct AP lyase active sites in addition to the topoisomerase active site.
Nucleic Acids Res., 44, 2016
5D17
DownloadVisualize
BU of 5d17 by Molmil
Structure of the C-terminal domain of TnsE at 2.85 resolution
Descriptor: Transposon Tn7 transposition protein TnsE
Authors:Guarne, A, Caron, J.J.
Deposit date:2015-08-03
Release date:2015-09-30
Last modified:2020-01-08
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Conformational toggling controls target site choice for the heteromeric transposase element Tn7.
Nucleic Acids Res., 43, 2015
6JVN
DownloadVisualize
BU of 6jvn by Molmil
Crystal structure of human MTH1 in complex with compound MI1020
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, N4-methyl-6-morpholin-4-yl-pyrimidine-2,4-diamine
Authors:Peng, C, Li, Y.H, Cheng, Y.S.
Deposit date:2019-04-17
Release date:2020-10-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Inhibitor development of MTH1 via high-throughput screening with fragment based library and MTH1 substrate binding cavity.
Bioorg.Chem., 110, 2021
2O9A
DownloadVisualize
BU of 2o9a by Molmil
The crystal structure of the E.coli IclR C-terminal fragment in complex with pyruvate.
Descriptor: 1,2-ETHANEDIOL, Acetate operon repressor, PYRUVIC ACID
Authors:Lunin, V.V, Ezersky, A, Evdokimova, E, Kudritska, M, Savchenko, A.
Deposit date:2006-12-13
Release date:2007-04-10
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Glyoxylate and Pyruvate Are Antagonistic Effectors of the Escherichia coli IclR Transcriptional Regulator.
J.Biol.Chem., 282, 2007
6JVS
DownloadVisualize
BU of 6jvs by Molmil
Crystal structure of human MTH1 in complex with compound MI1029
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, N4-cyclopropyl-6-[4-(oxetan-3-yl)piperazin-1-yl]pyrimidine-2,4-diamine
Authors:Peng, C, Li, Y.H, Cheng, Y.S.
Deposit date:2019-04-17
Release date:2020-10-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Inhibitor development of MTH1 via high-throughput screening with fragment based library and MTH1 substrate binding cavity.
Bioorg.Chem., 110, 2021
6JVK
DownloadVisualize
BU of 6jvk by Molmil
Crystal structure of human MTH1 in complex with compound MI1012
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, N4-methyl-6-(4-methylpiperazin-1-yl)pyrimidine-2,4-diamine
Authors:Peng, C, Li, Y.H, Cheng, Y.S.
Deposit date:2019-04-17
Release date:2020-10-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Inhibitor development of MTH1 via high-throughput screening with fragment based library and MTH1 substrate binding cavity.
Bioorg.Chem., 110, 2021
6JVT
DownloadVisualize
BU of 6jvt by Molmil
Crystal structure of human MTH1 in complex with compound MI1030
Descriptor: 7,8-dihydro-8-oxoguanine triphosphatase, N4-methyl-6-[4-(oxetan-3-yl)piperazin-1-yl]pyrimidine-2,4-diamine
Authors:Peng, C, Li, Y.H, Cheng, Y.S.
Deposit date:2019-04-17
Release date:2020-10-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (1.801 Å)
Cite:Inhibitor development of MTH1 via high-throughput screening with fragment based library and MTH1 substrate binding cavity.
Bioorg.Chem., 110, 2021
6JVJ
DownloadVisualize
BU of 6jvj by Molmil
Crystal structure of human MTH1 in complex with compound MI1006
Descriptor: 5-ethyl-N4-methyl-6-piperidin-1-yl-pyrimidine-2,4-diamine, 7,8-dihydro-8-oxoguanine triphosphatase
Authors:Peng, C, Li, Y.H, Cheng, Y.S.
Deposit date:2019-04-17
Release date:2020-10-28
Last modified:2024-03-27
Method:X-RAY DIFFRACTION (2.297 Å)
Cite:Inhibitor development of MTH1 via high-throughput screening with fragment based library and MTH1 substrate binding cavity.
Bioorg.Chem., 110, 2021

225946

건을2024-10-09부터공개중

PDB statisticsPDBj update infoContact PDBjnumon