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3QHD
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BU of 3qhd by Molmil
Crystal structure of 2-C-METHYL-D-ERYTHRITOL 2,4-CYCLODIPHOSPHATE Synthase from BURKHOLDERIA PSEUDOMALLEI bound to CYTIDINE, FOL795 and FOL955
Descriptor: 2-(pyridin-3-yl)-1,3-thiazole-4-carbaldehyde, 2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase, 4-(1H-IMIDAZOL-1-YL)PHENOL, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2011-01-25
Release date:2011-02-09
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Leveraging structure determination with fragment screening for infectious disease drug targets: MECP synthase from Burkholderia pseudomallei.
J Struct Funct Genomics, 12, 2011
2EUN
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BU of 2eun by Molmil
Cytochrome c peroxidase (CCP) in complex with 2,4-diaminopyrimidine
Descriptor: PROTOPORPHYRIN IX CONTAINING FE, PYRIMIDINE-2,4-DIAMINE, cytochrome c peroxidase
Authors:Brenk, R, Vetter, S.W, Boyce, S.E, Goodin, D.B, Shoichet, B.K.
Deposit date:2005-10-29
Release date:2006-04-11
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Probing molecular docking in a charged model binding site.
J.Mol.Biol., 357, 2006
5VO0
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BU of 5vo0 by Molmil
Structure of a TRAF6-Ubc13~Ub complex
Descriptor: POTASSIUM ION, TNF receptor-associated factor 6, Ubiquitin, ...
Authors:Middleton, A.J, Day, C.L.
Deposit date:2017-05-01
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.9 Å)
Cite:The activity of TRAF RING homo- and heterodimers is regulated by zinc finger 1.
Nat Commun, 8, 2017
5LOM
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BU of 5lom by Molmil
Crystal structure of the PBP SocA from Agrobacterium tumefaciens C58 in complex with DFG at 1.5 A resolution
Descriptor: 1,2-ETHANEDIOL, Deoxyfructosyl-amino Acid Transporter Periplasmic Binding Protein, Deoxyfructosylglutamine
Authors:Marty, L, Vigouroux, A, Morera, S.
Deposit date:2016-08-09
Release date:2016-09-21
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural Basis for High Specificity of Amadori Compound and Mannopine Opine Binding in Bacterial Pathogens.
J.Biol.Chem., 291, 2016
5W1E
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BU of 5w1e by Molmil
PobR in complex with PHB
Descriptor: GLYCEROL, P-HYDROXYBENZOIC ACID, Putative transcriptional regulator, ...
Authors:Page, R, Peti, W, Lord, D.M, Bajaj, R, Zhang, R.
Deposit date:2017-06-02
Release date:2017-12-13
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.06 Å)
Cite:A peculiar IclR family transcription factor regulates para-hydroxybenzoate catabolism in Streptomyces coelicolor.
Nucleic Acids Res., 46, 2018
6NT5
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BU of 6nt5 by Molmil
Cryo-EM structure of full-length human STING in the apo state
Descriptor: Stimulator of interferon protein
Authors:Shang, G, Zhang, C, Chen, Z.J, Bai, X, Zhang, X.
Deposit date:2019-01-28
Release date:2019-03-06
Last modified:2024-03-20
Method:ELECTRON MICROSCOPY (4.1 Å)
Cite:Cryo-EM structures of STING reveal its mechanism of activation by cyclic GMP-AMP.
Nature, 567, 2019
5VNZ
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BU of 5vnz by Molmil
Structure of a TRAF6-Ubc13~Ub complex
Descriptor: TNF receptor-associated factor 6, Ubiquitin, Ubiquitin-conjugating enzyme E2 N, ...
Authors:Middleton, A.J, Day, C.L.
Deposit date:2017-05-01
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (3.41 Å)
Cite:The activity of TRAF RING homo- and heterodimers is regulated by zinc finger 1.
Nat Commun, 8, 2017
2IJ5
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BU of 2ij5 by Molmil
Crystal structure of cytochrome P450 CYP121, P212121 space group
Descriptor: Cytochrome P450 121, PROTOPORPHYRIN IX CONTAINING FE, SULFATE ION
Authors:Roujeinikova, A, Leys, D.
Deposit date:2006-09-29
Release date:2006-11-07
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure of the Mycobacterium tuberculosis P450 CYP121-fluconazole complex reveals new azole drug-P450 binding mode.
J.Biol.Chem., 281, 2006
5LOV
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BU of 5lov by Molmil
DZ-2384 tubulin complex
Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, DZ 2384, ...
Authors:Prota, A.E, Steinmetz, M.O, Shore, G.C, Brouhard, G, Roulston, A.
Deposit date:2016-08-10
Release date:2016-11-30
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:The synthetic diazonamide DZ-2384 has distinct effects on microtubule curvature and dynamics without neurotoxicity.
Sci Transl Med, 8, 2016
6H22
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BU of 6h22 by Molmil
Crystal structure of Mdm2 bound to a stapled peptide
Descriptor: 12-(dimethylamino)-3,10-diethyl-N,N,N-trimethyl-3,10-dihydrodibenzo[3,4:7,8]cycloocta[1,2-d:5,6-d']bis([1,2,3]triazole)-5-aminium, E3 ubiquitin-protein ligase Mdm2, Stapled peptide
Authors:Wang, X, Sharma, K, Spring, D.R, Hyvonen, M.
Deposit date:2018-07-12
Release date:2019-07-31
Last modified:2019-09-11
Method:X-RAY DIFFRACTION (2.006 Å)
Cite:Water-soluble, stable and azide-reactive strained dialkynes for biocompatible double strain-promoted click chemistry.
Org.Biomol.Chem., 17, 2019
3N10
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BU of 3n10 by Molmil
Product complex of adenylate cyclase class IV
Descriptor: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Adenylate cyclase 2, MANGANESE (II) ION, ...
Authors:Gallagher, D.T, Reddy, P.T.
Deposit date:2010-05-14
Release date:2010-06-23
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Active-Site Structure of Class IV Adenylyl Cyclase and Transphyletic Mechanism.
J.Mol.Biol., 405, 2011
4LTW
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BU of 4ltw by Molmil
Ancestral Ketosteroid Receptor-Progesterone-Mifepristone Complex
Descriptor: 11-(4-DIMETHYLAMINO-PHENYL)-17-HYDROXY-13-METHYL-17-PROP-1-YNYL-1,2,6,7,8,11,12,13,14,15,16,17-DODEC AHYDRO-CYCLOPENTA[A]PHENANTHREN-3-ONE, Ancestral Steroid Receptor 2, GLYCEROL, ...
Authors:Ortlund, E.A, Colucci, J.K.
Deposit date:2013-07-24
Release date:2013-12-25
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.045 Å)
Cite:X-ray crystal structure of the ancestral 3-ketosteroid receptor-progesterone-mifepristone complex shows mifepristone bound at the coactivator binding interface.
Plos One, 8, 2013
5VVW
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BU of 5vvw by Molmil
Structure of MurC from Pseudomonas aeruginosa
Descriptor: 1,2-ETHANEDIOL, UDP-N-acetylmuramate--L-alanine ligase
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2017-05-21
Release date:2017-05-31
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of MurC from Pseudomonas aeruginosa
To Be Published
7QWF
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BU of 7qwf by Molmil
BAZ2A bromodomain in complex with acetylpyrrole derivative compound 45
Descriptor: 1,2-ETHANEDIOL, 1-[4-ethyl-2-methyl-5-[2-[2-(methylamino)ethyl]-1,3-thiazol-4-yl]-1~{H}-pyrrol-3-yl]ethanone, Bromodomain adjacent to zinc finger domain protein 2A, ...
Authors:Dalle Vedove, A, Cazzanelli, G, Caflisch, A, Lolli, G.
Deposit date:2022-01-25
Release date:2022-09-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.25 Å)
Cite:Identification of a BAZ2A-Bromodomain Hit Compound by Fragment Growing.
Acs Med.Chem.Lett., 13, 2022
3NB6
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BU of 3nb6 by Molmil
Crystal structure of Aquifex aeolicus peptidoglycan glycosyltransferase in complex with Methylphosphoryl Neryl Moenomycin
Descriptor: Penicillin-binding protein 1A
Authors:Sliz, P, Yuan, Y, Walker, S, Kahne, D.
Deposit date:2010-06-02
Release date:2011-05-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Functional and structural analysis of a key region of the cell wall inhibitor moenomycin.
Acs Chem.Biol., 5, 2010
6TLI
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BU of 6tli by Molmil
THERMOLYSIN (60% ISOPROPANOL SOAKED CRYSTALS)
Descriptor: CALCIUM ION, DIMETHYL SULFOXIDE, ISOPROPYL ALCOHOL, ...
Authors:English, A.C, Done, S.H, Groom, C.R, Hubbard, R.E.
Deposit date:1998-10-29
Release date:2000-03-13
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Locating interaction sites on proteins: the crystal structure of thermolysin soaked in 2% to 100% isopropanol.
Proteins, 37, 1999
5EL2
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BU of 5el2 by Molmil
Crystal structure of Odorant Binding Protein 1 from Anopheles gambiae (AgamOBP1) with Icaridin (butan-2-yl 2-(2-hydroxyethyl)piperidine-1-carboxylate)
Descriptor: AGAP003309-PA, Icaridin, MAGNESIUM ION
Authors:Drakou, C.E, Tsitsanou, K.E, Zographos, S.E.
Deposit date:2015-11-04
Release date:2016-08-31
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.75 Å)
Cite:The crystal structure of the AgamOBP1Icaridin complex reveals alternative binding modes and stereo-selective repellent recognition.
Cell. Mol. Life Sci., 74, 2017
5MNA
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BU of 5mna by Molmil
Cationic trypsin in complex with aniline (deuterated sample at 295 K)
Descriptor: ANILINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (1.441 Å)
Cite:Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin.
Angew. Chem. Int. Ed. Engl., 56, 2017
5MON
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BU of 5mon by Molmil
Joint X-ray/neutron structure of cationic trypsin in complex with 2-aminopyridine
Descriptor: 2-AMINOPYRIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Schrader, T.E, Ostermann, A, Heine, A, Klebe, G.
Deposit date:2016-12-14
Release date:2017-05-24
Last modified:2024-05-01
Method:NEUTRON DIFFRACTION (0.939 Å), X-RAY DIFFRACTION
Cite:Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin.
Angew. Chem. Int. Ed. Engl., 56, 2017
4CVL
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BU of 4cvl by Molmil
PaMurF in complex with AMP-PNP
Descriptor: MAGNESIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, UDP-N-ACETYLMURAMOYL-TRIPEPTIDE--D-ALANYL-D-ALANINE LIGASE
Authors:Ruane, K.M, Majce, V.
Deposit date:2014-03-28
Release date:2015-04-22
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.98 Å)
Cite:Pamurf in Complex with AMP-Pnp
To be Published
3NB7
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BU of 3nb7 by Molmil
Crystal structure of Aquifex Aeolicus Peptidoglycan Glycosyltransferase in complex with Decarboxylated Neryl Moenomycin
Descriptor: Penicillin-binding protein 1A
Authors:Sliz, P, Yuan, Y, Walker, S.
Deposit date:2010-06-02
Release date:2011-05-18
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:Functional and structural analysis of a key region of the cell wall inhibitor moenomycin.
Acs Chem.Biol., 5, 2010
5MN1
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BU of 5mn1 by Molmil
Cationic trypsin in complex with 2-aminopyridine (deuterated sample at 100 K)
Descriptor: 2-AMINOPYRIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-12
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.79 Å)
Cite:Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin.
Angew. Chem. Int. Ed. Engl., 56, 2017
5MNY
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BU of 5mny by Molmil
Neutron structure of cationic trypsin in complex with aniline
Descriptor: CALCIUM ION, Cationic trypsin, phenylazanium
Authors:Schiebel, J, Schrader, T.E, Ostermann, A, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2017-05-24
Last modified:2024-01-17
Method:NEUTRON DIFFRACTION (1.43 Å)
Cite:Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin.
Angew. Chem. Int. Ed. Engl., 56, 2017
5MNB
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BU of 5mnb by Molmil
Cationic trypsin in complex with 2-aminopyridine (deuterated sample at 295 K)
Descriptor: 2-AMINOPYRIDINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.939 Å)
Cite:Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin.
Angew. Chem. Int. Ed. Engl., 56, 2017
5MNC
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BU of 5mnc by Molmil
Cationic trypsin in complex with aniline (deuterated sample at 100 K)
Descriptor: ANILINE, CALCIUM ION, Cationic trypsin, ...
Authors:Schiebel, J, Heine, A, Klebe, G.
Deposit date:2016-12-13
Release date:2017-05-24
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (0.916 Å)
Cite:Charges Shift Protonation: Neutron Diffraction Reveals that Aniline and 2-Aminopyridine Become Protonated Upon Binding to Trypsin.
Angew. Chem. Int. Ed. Engl., 56, 2017

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