Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7ET1
DownloadVisualize
BU of 7et1 by Molmil
Cryo-EM structure of the gastric proton pump K791S/E820D/Y340N/E936V/Y799W mutant in K+-occluded (K+)E2-AlF state
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Abe, K.
Deposit date:2021-05-12
Release date:2021-09-01
Last modified:2022-03-16
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:Gastric proton pump with two occluded K + engineered with sodium pump-mimetic mutations.
Nat Commun, 12, 2021
2XZB
DownloadVisualize
BU of 2xzb by Molmil
Pig Gastric H,K-ATPase with bound BeF and SCH28080
Descriptor: POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1, POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
Authors:Abe, K, Tani, K, Fujiyoshi, Y.
Deposit date:2010-11-24
Release date:2011-01-26
Last modified:2020-09-16
Method:ELECTRON CRYSTALLOGRAPHY (7 Å)
Cite:Conformational Rearrangement of Gastric H(+),K(+)- ATPase Induced by an Acid Suppressant.
Nat.Commun., 2, 2011
2YN9
DownloadVisualize
BU of 2yn9 by Molmil
Cryo-EM structure of gastric H+,K+-ATPase with bound rubidium
Descriptor: POTASSIUM-TRANSPORTING ATPASE ALPHA CHAIN 1, POTASSIUM-TRANSPORTING ATPASE SUBUNIT BETA
Authors:Abe, K, Tani, K, Friedrich, T, Fujiyoshi, Y.
Deposit date:2012-10-13
Release date:2012-11-07
Last modified:2014-07-16
Method:ELECTRON CRYSTALLOGRAPHY (8 Å)
Cite:Cryo-Em Structure of Gastric H+,K+-ATPase with a Single Occupied Cation-Binding Site.
Proc.Natl.Acad.Sci.USA, 109, 2012
2YFY
DownloadVisualize
BU of 2yfy by Molmil
SERCA in the HnE2 State Complexed With Debutanoyl Thapsigargin
Descriptor: DEBUTANOYL THAPSIGARGIN, MAGNESIUM ION, POTASSIUM ION, ...
Authors:Sonntag, Y, Musgaard, M, Olesen, C, Schiott, B, Moller, J.V, Nissen, P, Thogersen, L.
Deposit date:2011-04-11
Release date:2011-06-29
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Mutual Adaptation of a Membrane Protein and its Lipid Bilayer During Conformational Changes.
Nat.Commun., 2, 2011
2ZBG
DownloadVisualize
BU of 2zbg by Molmil
Calcium pump crystal structure with bound AlF4 and TG in the absence of calcium
Descriptor: MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, 3ABETA, ...
Authors:Toyoshima, C, Ogawa, H, Norimatsu, Y.
Deposit date:2007-10-20
Release date:2007-12-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:How processing of aspartylphosphate is coupled to lumenal gating of the ion pathway in the calcium pump
Proc.Natl.Acad.Sci.Usa, 104, 2007
2ZBD
DownloadVisualize
BU of 2zbd by Molmil
Crystal Structure of the SR Calcium Pump with Bound Aluminium Fluoride, ADP and Calcium
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, ADENOSINE-5'-DIPHOSPHATE, CALCIUM ION, ...
Authors:Toyoshima, C, Nomura, H, Tsuda, T, Ogawa, H, Norimatsu, Y.
Deposit date:2007-10-20
Release date:2007-11-20
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Lumenal gating mechanism revealed in calcium pump crystal structures with phosphate analogues
Nature, 432, 2004
2ZBE
DownloadVisualize
BU of 2zbe by Molmil
Calcium pump crystal structure with bound BeF3 in the absence of calcium and TG
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, Sarcoplasmic/endoplasmic reticulum calcium ATPase 1
Authors:Toyoshima, C, Ogawa, H, Norimatsu, Y.
Deposit date:2007-10-20
Release date:2007-12-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.8 Å)
Cite:How processing of aspartylphosphate is coupled to lumenal gating of the ion pathway in the calcium pump
Proc.Natl.Acad.Sci.Usa, 104, 2007
2ZBF
DownloadVisualize
BU of 2zbf by Molmil
Calcium pump crystal structure with bound BeF3 and TG in the absence of calcium
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, ...
Authors:Toyoshima, C, Ogawa, H, Norimatsu, Y.
Deposit date:2007-10-20
Release date:2007-12-11
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:How processing of aspartylphosphate is coupled to lumenal gating of the ion pathway in the calcium pump
Proc.Natl.Acad.Sci.Usa, 104, 2007
2ZXE
DownloadVisualize
BU of 2zxe by Molmil
Crystal structure of the sodium - potassium pump in the E2.2K+.Pi state
Descriptor: 2-acetamido-2-deoxy-alpha-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, ...
Authors:Shinoda, T, Ogawa, H, Cornelius, F, Toyoshima, C.
Deposit date:2008-12-22
Release date:2009-05-19
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Crystal structure of the sodium - potassium pump at 2.4 A resolution
Nature, 459, 2009
3A3Y
DownloadVisualize
BU of 3a3y by Molmil
Crystal structure of the sodium-potassium pump with bound potassium and ouabain
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CHOLESTEROL, MAGNESIUM ION, ...
Authors:Ogawa, H, Shinoda, T, Cornelius, F, Toyoshima, C.
Deposit date:2009-06-23
Release date:2009-09-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of the sodium-potassium pump (Na+,K+-ATPase) with bound potassium and ouabain.
Proc.Natl.Acad.Sci.USA, 106, 2009
3AR4
DownloadVisualize
BU of 3ar4 by Molmil
Calcium pump crystal structure with bound ATP and TG in the absence of Ca2+
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, ...
Authors:Toyoshima, C, Yonekura, S, Tsueda, J, Iwasawa, S.
Deposit date:2010-11-24
Release date:2011-02-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Trinitrophenyl derivatives bind differently from parent adenine nucleotides to Ca2+-ATPase in the absence of Ca2+
Proc.Natl.Acad.Sci.USA, 108, 2011
3AR9
DownloadVisualize
BU of 3ar9 by Molmil
Calcium pump crystal structure with bound BeF3, TNP-AMP and TG in the absence of calcium
Descriptor: 2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate), BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, ...
Authors:Toyoshima, C, Yonekura, S, Tsueda, J, Iwasawa, S.
Deposit date:2010-11-24
Release date:2011-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Trinitrophenyl derivatives bind differently from parent adenine nucleotides to Ca2+-ATPase in the absence of Ca2+
Proc.Natl.Acad.Sci.USA, 108, 2011
3AR3
DownloadVisualize
BU of 3ar3 by Molmil
Calcium pump crystal structure with bound ADP and TG
Descriptor: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, ...
Authors:Toyoshima, C, Yonekura, S, Tsueda, J, Iwasawa, S.
Deposit date:2010-11-24
Release date:2011-02-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Trinitrophenyl derivatives bind differently from parent adenine nucleotides to Ca2+-ATPase in the absence of Ca2+
Proc.Natl.Acad.Sci.USA, 108, 2011
3AR7
DownloadVisualize
BU of 3ar7 by Molmil
Calcium pump crystal structure with bound TNP-ATP and TG in the absence of Ca2+
Descriptor: OCTANOIC ACID [3S-[3ALPHA, 3ABETA, 4ALPHA, ...
Authors:Toyoshima, C, Yonekura, S, Tsueda, J, Iwasawa, S.
Deposit date:2010-11-24
Release date:2011-02-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Trinitrophenyl derivatives bind differently from parent adenine nucleotides to Ca2+-ATPase in the absence of Ca2+
Proc.Natl.Acad.Sci.USA, 108, 2011
3AR5
DownloadVisualize
BU of 3ar5 by Molmil
Calcium pump crystal structure with bound TNP-AMP and TG
Descriptor: 2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate), OCTANOIC ACID [3S-[3ALPHA, 3ABETA, ...
Authors:Toyoshima, C, Yonekura, S, Tsueda, J, Iwasawa, S.
Deposit date:2010-11-24
Release date:2011-02-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Trinitrophenyl derivatives bind differently from parent adenine nucleotides to Ca2+-ATPase in the absence of Ca2+
Proc.Natl.Acad.Sci.USA, 108, 2011
3AR6
DownloadVisualize
BU of 3ar6 by Molmil
Calcium pump crystal structure with bound TNP-ADP and TG in the absence of calcium
Descriptor: 2',3'-O-[(1R,6R)-2,4,6-trinitrocyclohexa-2,4-diene-1,1-diyl]adenosine 5'-(trihydrogen diphosphate), MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, ...
Authors:Toyoshima, C, Yonekura, S, Tsueda, J, Iwasawa, S.
Deposit date:2010-11-24
Release date:2011-02-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Trinitrophenyl derivatives bind differently from parent adenine nucleotides to Ca2+-ATPase in the absence of Ca2+.
Proc.Natl.Acad.Sci.USA, 108, 2011
3AR2
DownloadVisualize
BU of 3ar2 by Molmil
Calcium pump crystal structure with bound AMPPCP and Ca2+
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, CALCIUM ION, PHOSPHOMETHYLPHOSPHONIC ACID ADENYLATE ESTER, ...
Authors:Toyoshima, C, Yonekura, S, Tsueda, J, Iwasawa, S.
Deposit date:2010-11-24
Release date:2011-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Trinitrophenyl derivatives bind differently from parent adenine nucleotides to Ca2+-ATPase in the absence of Ca2+
Proc.Natl.Acad.Sci.USA, 108, 2011
3AR8
DownloadVisualize
BU of 3ar8 by Molmil
Calcium pump crystal structure with bound AlF4, TNP-AMP and TG
Descriptor: 2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate), MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, ...
Authors:Toyoshima, C, Yonekura, S, Tsueda, J, Iwasawa, S.
Deposit date:2010-11-24
Release date:2011-02-02
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Trinitrophenyl derivatives bind differently from parent adenine nucleotides to Ca2+-ATPase in the absence of Ca2+
Proc.Natl.Acad.Sci.USA, 108, 2011
3BA6
DownloadVisualize
BU of 3ba6 by Molmil
Structure of the Ca2E1P phosphoenzyme intermediate of the SERCA Ca2+-ATPase
Descriptor: AMP PHOSPHORAMIDATE, CALCIUM ION, POTASSIUM ION, ...
Authors:Picard, M, Winther, A.M.L, Olesen, C, Gyrup, C, Morth, J.P, Oxvig, C, Moller, J.V, Nissen, P.
Deposit date:2007-11-07
Release date:2007-12-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:The structural basis of calcium transport by the calcium pump.
Nature, 450, 2007
3B8E
DownloadVisualize
BU of 3b8e by Molmil
Crystal structure of the sodium-potassium pump
Descriptor: 1,2-DIACYL-SN-GLYCERO-3-PHOSPHOCHOLINE, MAGNESIUM ION, Na+/K+ ATPase gamma subunit transcript variant a, ...
Authors:Morth, J.P, Pedersen, P.B, Toustrup-Jensen, M.S, Soerensen, T.L.M, Petersen, J, Andersen, J.P, Vilsen, B, Nissen, P.
Deposit date:2007-11-01
Release date:2007-12-18
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Crystal structure of the sodium-potassium pump.
Nature, 450, 2007
3B9B
DownloadVisualize
BU of 3b9b by Molmil
Structure of the E2 beryllium fluoride complex of the SERCA Ca2+-ATPase
Descriptor: BERYLLIUM TRIFLUORIDE ION, MAGNESIUM ION, SODIUM ION, ...
Authors:Olesen, C, Picard, M, Winther, A.M.L, Morth, J.P, Moller, J.V, Nissen, P.
Deposit date:2007-11-04
Release date:2007-12-18
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.65 Å)
Cite:The structural basis of calcium transport by the calcium pump.
Nature, 450, 2007
7VH6
DownloadVisualize
BU of 7vh6 by Molmil
Cryo-EM structure of the hexameric plasma membrane H+-ATPase in the active state (pH 6.0, BeF3-, conformation 1, C1 symmetry)
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, BERYLLIUM TRIFLUORIDE ION, Plasma membrane ATPase 1
Authors:Zhao, P, Zhao, C, Chen, D, Yun, C, Li, H, Bai, L.
Deposit date:2021-09-21
Release date:2021-11-24
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:Structure and activation mechanism of the hexameric plasma membrane H + -ATPase.
Nat Commun, 12, 2021
7VH5
DownloadVisualize
BU of 7vh5 by Molmil
Cryo-EM structure of the hexameric plasma membrane H+-ATPase in the autoinhibited state (pH 7.4, C1 symmetry)
Descriptor: (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate, Plasma membrane ATPase 1, SPHINGOSINE
Authors:Zhao, P, Zhao, C, Chen, D, Yun, C, Li, H, Bai, L.
Deposit date:2021-09-21
Release date:2021-11-24
Last modified:2022-02-16
Method:ELECTRON MICROSCOPY (3.2 Å)
Cite:Structure and activation mechanism of the hexameric plasma membrane H + -ATPase.
Nat Commun, 12, 2021
7W49
DownloadVisualize
BU of 7w49 by Molmil
Crystal structure of the gastric proton pump complexed with soraprazan
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, Potassium-transporting ATPase alpha chain 1, ...
Authors:Abe, K, Tanaka, S.
Deposit date:2021-11-26
Release date:2022-01-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural Basis for Binding of Potassium-Competitive Acid Blockers to the Gastric Proton Pump.
J.Med.Chem., 65, 2022
7W48
DownloadVisualize
BU of 7w48 by Molmil
Crystal structure of the gastric proton pump complexed with PF-03716556
Descriptor: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, 2-acetamido-2-deoxy-beta-D-glucopyranose, MAGNESIUM ION, ...
Authors:Abe, K, Tanaka, S.
Deposit date:2021-11-26
Release date:2022-01-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (3.5 Å)
Cite:Structural Basis for Binding of Potassium-Competitive Acid Blockers to the Gastric Proton Pump.
J.Med.Chem., 65, 2022

220760

건을2024-06-05부터공개중

PDB statisticsPDBj update infoContact PDBjnumon