Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6TRA
DownloadVisualize
BU of 6tra by Molmil
Cryo- EM structure of the Thermosynechococcus elongatus photosystem I in the presence of cytochrome c6
Descriptor: 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, BETA-CAROTENE, ...
Authors:Koelsch, A, Radon, C, Baumert, A, Buerger, J, Miehlke, T, Lisdat, F, Zouni, A, Wendler, P.
Deposit date:2019-12-18
Release date:2020-09-16
Method:ELECTRON MICROSCOPY (2.85 Å)
Cite:Current limits of structural biology: The transient interaction between cytochrome c6 and photosystem I
Curr.Opin.Struct.Biol., 2, 2020
2NSJ
DownloadVisualize
BU of 2nsj by Molmil
E. coli PurE H45Q mutant complexed with CAIR
Descriptor: 5-AMINO-1-(5-O-PHOSPHONO-BETA-D-RIBOFURANOSYL)-1H-IMIDAZOLE-4-CARBOXYLIC ACID, Phosphoribosylaminoimidazole carboxylase catalytic subunit
Authors:Ealick, S.E, Morar, M.
Deposit date:2006-11-04
Release date:2007-04-24
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.31 Å)
Cite:N(5)-CAIR Mutase: Role of a CO(2) Binding Site and Substrate Movement in Catalysis.
Biochemistry, 46, 2007
2NUK
DownloadVisualize
BU of 2nuk by Molmil
Soluble Domain of the Rieske Iron-Sulfur Protein from Rhodobacter sphaeroides
Descriptor: FE2/S2 (INORGANIC) CLUSTER, Ubiquinol-cytochrome c reductase iron-sulfur subunit
Authors:Kolling, D, Brunzelle, J, Lhee, S, Crofts, A.R, Nair, S.K.
Deposit date:2006-11-09
Release date:2007-04-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Atomic resolution structures of rieske iron-sulfur protein: role of hydrogen bonds in tuning the redox potential of iron-sulfur clusters.
Structure, 15, 2007
4C1Y
DownloadVisualize
BU of 4c1y by Molmil
Crystal Structure of Fucose binding lectin from Aspergillus Fumigatus (AFL) in complex with b-methylfucoside
Descriptor: CALCIUM ION, DI(HYDROXYETHYL)ETHER, FUCOSE-SPECIFIC LECTIN FLEA, ...
Authors:Houser, J, Komarek, J, Kostlanova, N, Lahmann, M, Cioci, G, Varrot, A, Imberty, A, Wimmerova, M.
Deposit date:2013-08-14
Release date:2014-08-27
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.23 Å)
Cite:Structural Insights Into Aspergillus Fumigatus Lectin Specificity: Afl Binding Sites are Functionally Non-Equivalent.
Acta Crystallogr.,Sect.D, 71, 2015
6TTE
DownloadVisualize
BU of 6tte by Molmil
Beta-galactosidase in complex with PETG
Descriptor: 2-phenylethyl 1-thio-beta-D-galactopyranoside, Beta-galactosidase, MAGNESIUM ION
Authors:Saur, M, Hartshorn, M.J, Dong, J, Reeks, J, Bunkoczi, G, Jhoti, H, Williams, P.A.
Deposit date:2019-12-27
Release date:2020-01-15
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (2.2 Å)
Cite:Fragment-based drug discovery using cryo-EM.
Drug Discov Today, 25, 2020
2NVF
DownloadVisualize
BU of 2nvf by Molmil
Soluble domain of Rieske Iron-Sulfur protein.
Descriptor: FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, Ubiquinol-cytochrome c reductase iron-sulfur subunit
Authors:Kolling, D, Brunzelle, J, Lhee, S, Crofts, A.R, Nair, S.K.
Deposit date:2006-11-12
Release date:2007-02-06
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Atomic resolution structures of rieske iron-sulfur protein: role of hydrogen bonds in tuning the redox potential of iron-sulfur clusters.
Structure, 15, 2007
4CCD
DownloadVisualize
BU of 4ccd by Molmil
STRUCTURE OF MOUSE GALACTOCEREBROSIDASE WITH D-GALACTAL: ENZYME- INTERMEDIATE COMPLEX
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-deoxy-alpha-D-galactopyranose, ...
Authors:Hill, C.H, Graham, S.C, Read, R.J, Deane, J.E.
Deposit date:2013-10-21
Release date:2013-12-11
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.97 Å)
Cite:Structural Snapshots Illustrate the Catalytic Cycle of Beta-Galactocerebrosidase, the Defective Enzyme in Krabbe Disease
Proc.Natl.Acad.Sci.USA, 110, 2013
2NWF
DownloadVisualize
BU of 2nwf by Molmil
Soluble domain of Rieske Iron Sulfur Protein
Descriptor: FE2/S2 (INORGANIC) CLUSTER, GLYCEROL, Ubiquinol-cytochrome c reductase iron-sulfur subunit
Authors:Kolling, D, Brunzelle, J.S, Lhee, S, Crofts, A.R, Nair, S.K.
Deposit date:2006-11-14
Release date:2007-04-10
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Atomic resolution structures of rieske iron-sulfur protein: role of hydrogen bonds in tuning the redox potential of iron-sulfur clusters.
Structure, 15, 2007
6T2V
DownloadVisualize
BU of 6t2v by Molmil
Cryo-EM structure of the RecBCD in complex with Chi-plus2 substrate
Descriptor: DNA (Chi-plus2), RecBCD enzyme subunit RecB, RecBCD enzyme subunit RecC, ...
Authors:Cheng, K, Wilkinson, M, Wigley, D.B.
Deposit date:2019-10-09
Release date:2020-01-01
Last modified:2024-05-22
Method:ELECTRON MICROSCOPY (3.8 Å)
Cite:A conformational switch in response to Chi converts RecBCD from phage destruction to DNA repair.
Nat.Struct.Mol.Biol., 27, 2020
6N3F
DownloadVisualize
BU of 6n3f by Molmil
Structure of HIV Tat-specific factor 1 U2AF Homology Motif bound to SF3b1 ULM5
Descriptor: DI(HYDROXYETHYL)ETHER, GLYCEROL, HIV Tat-specific factor 1, ...
Authors:Leach, J.R, Jenkins, J.L, Kielkopf, C.L.
Deposit date:2018-11-15
Release date:2019-01-02
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:The pre-mRNA splicing and transcription factor Tat-SF1 is a functional partner of the spliceosome SF3b1 subunit via a U2AF homology motif interface.
J. Biol. Chem., 294, 2019
6N4R
DownloadVisualize
BU of 6n4r by Molmil
CryoEM structure of Nav1.7 VSD2 (deactived state) in complex with the gating modifier toxin ProTx2
Descriptor: Beta/omega-theraphotoxin-Tp2a, Fab heavy chain, Fab light chain, ...
Authors:Xu, H, Rohou, A, Arthur, C.P, Estevez, A, Ciferri, C, Payandeh, J, Koth, C.M.
Deposit date:2018-11-20
Release date:2019-01-23
Last modified:2019-12-18
Method:ELECTRON MICROSCOPY (4.2 Å)
Cite:Structural Basis of Nav1.7 Inhibition by a Gating-Modifier Spider Toxin.
Cell, 176, 2019
4CA2
DownloadVisualize
BU of 4ca2 by Molmil
ENGINEERING THE HYDROPHOBIC POCKET OF CARBONIC ANHYDRASE II
Descriptor: CARBONIC ANHYDRASE II, MERCURY (II) ION, ZINC ION
Authors:Alexander, R.S, Christianson, D.W.
Deposit date:1991-06-08
Release date:1992-10-31
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Engineering the hydrophobic pocket of carbonic anhydrase II.
Biochemistry, 30, 1991
2OIV
DownloadVisualize
BU of 2oiv by Molmil
Structural Analysis of Xanthomonas XopD Provides Insights Into Substrate Specificity of Ubiquitin-like Protein Proteases
Descriptor: PHOSPHATE ION, Xanthomonas outer protein D
Authors:Chosed, R, Tomchick, D.R, Brautigam, C.A, Machius, M, Orth, K.
Deposit date:2007-01-11
Release date:2007-05-29
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.95 Å)
Cite:Structural analysis of Xanthomonas XopD provides insights into substrate specificity of ubiquitin-like protein proteases.
J.Biol.Chem., 282, 2007
4CCX
DownloadVisualize
BU of 4ccx by Molmil
ALTERING SUBSTRATE SPECIFICITY AT THE HEME EDGE OF CYTOCHROME C PEROXIDASE
Descriptor: CYTOCHROME C PEROXIDASE, PROTOPORPHYRIN IX CONTAINING FE
Authors:Wilcox, S.K, Jensen, G.M, Fitzgerald, M.M, Mcree, D.E, Goodin, D.B.
Deposit date:1995-03-17
Release date:1995-07-10
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Altering substrate specificity at the heme edge of cytochrome c peroxidase.
Biochemistry, 35, 1996
3F3Y
DownloadVisualize
BU of 3f3y by Molmil
Crystal structure of human cytosolic sulfotransferase SULT2A1 in complex with PAP and lithocholic acid
Descriptor: (3beta,5beta,14beta,17alpha)-3-hydroxycholan-24-oic acid, ADENOSINE-3'-5'-DIPHOSPHATE, Bile salt sulfotransferase
Authors:Pan, P.W, Dong, A, Amaya, M, Edwards, A.M.
Deposit date:2008-10-31
Release date:2009-09-15
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:rystal structure of human cytosolic sulfotransferase SULT2A1 in complex with PAP and lithocholic acid
To be Published
6TQ6
DownloadVisualize
BU of 6tq6 by Molmil
Crystal structure of the Orexin-1 receptor in complex with Compound 14
Descriptor: (1R)-2-{[(S)-{[(2S)-2,3-dihydroxypropyl]oxy}(hydroxy)phosphoryl]oxy}-1-[(hexadecanoyloxy)methyl]ethyl (9Z)-octadec-9-enoate, 2-(5-methylsulfonylpyridin-3-yl)-1,1-bis(oxidanylidene)-4-[[2,4,6-tris(fluoranyl)phenyl]methyl]pyrido[2,3-e][1,2,4]thiadiazin-3-one, Orexin receptor type 1, ...
Authors:Rappas, M, Ali, A, Bennett, K.A, Brown, J.D, Bucknell, S.J, Congreve, M, Cooke, R.M, Cseke, G, de Graaf, C, Dore, A.S, Errey, J.C, Jazayeri, A, Marshall, F.H, Mason, J.S, Mould, R, Patel, J.C, Tehan, B.G, Weir, M, Christopher, J.A.
Deposit date:2019-12-16
Release date:2020-01-01
Last modified:2024-10-09
Method:X-RAY DIFFRACTION (2.546 Å)
Cite:Comparison of Orexin 1 and Orexin 2 Ligand Binding Modes Using X-ray Crystallography and Computational Analysis.
J.Med.Chem., 63, 2020
3EX8
DownloadVisualize
BU of 3ex8 by Molmil
Complex structure of bacillus subtilis RibG reduction mechanism in riboflavin biosynthesis
Descriptor: Riboflavin biosynthesis protein ribD, ZINC ION, [(2R,3S,4R,5E)-5-[(5-amino-2,6-dioxo-3H-pyrimidin-4-yl)imino]-2,3,4-trihydroxy-pentyl] dihydrogen phosphate
Authors:Chen, S.C, Lin, Y.H, Yu, H.C, Liaw, S.H.
Deposit date:2008-10-16
Release date:2008-11-04
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.56 Å)
Cite:Complex structure of Bacillus subtilis RibG: the reduction mechanism during riboflavin biosynthesis.
J.Biol.Chem., 284, 2009
6TU4
DownloadVisualize
BU of 6tu4 by Molmil
Structure of Plasmodium Actin1 filament
Descriptor: ADENOSINE-5'-DIPHOSPHATE, Actin-1, Jasplakinolide, ...
Authors:Vahokoski, J, Calder, L.J, Lopez, A.J, Rosenthal, P.B, Kursula, I.
Deposit date:2020-01-02
Release date:2021-01-13
Last modified:2024-07-10
Method:ELECTRON MICROSCOPY (2.6 Å)
Cite:High-resolution structures of malaria parasite actomyosin and actin filaments.
Plos Pathog., 18, 2022
6NKN
DownloadVisualize
BU of 6nkn by Molmil
Time-resolved SFX structure of the PR intermediate of cytochrome c oxidase at room temperature
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Rousseau, D.L, Yeh, S.-R, Ishigami, I.
Deposit date:2019-01-07
Release date:2019-03-20
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Snapshot of an oxygen intermediate in the catalytic reaction of cytochromecoxidase.
Proc. Natl. Acad. Sci. U.S.A., 116, 2019
6T23
DownloadVisualize
BU of 6t23 by Molmil
Cryo-EM structure of jasplakinolide-stabilized F-actin (aged)
Descriptor: (4~{R},7~{R},10~{S},13~{S},15~{E},19~{S})-10-(4-azanylbutyl)-4-(4-hydroxyphenyl)-7-(1~{H}-indol-3-ylmethyl)-8,13,15,19-tetramethyl-1-oxa-5,8,11-triazacyclononadec-15-ene-2,6,9,12-tetrone, ADENOSINE-5'-DIPHOSPHATE, Actin, ...
Authors:Pospich, S, Merino, F, Raunser, S.
Deposit date:2019-10-07
Release date:2020-03-04
Last modified:2020-04-15
Method:ELECTRON MICROSCOPY (3.1 Å)
Cite:Structural Effects and Functional Implications of Phalloidin and Jasplakinolide Binding to Actin Filaments.
Structure, 28, 2020
6NKP
DownloadVisualize
BU of 6nkp by Molmil
EphA2 LBD in complex with bA-WLA-YSKbio peptide
Descriptor: BIOTIN, Ephrin type-A receptor 2, bA-WLA-YSKbio peptide
Authors:Lechtenberg, B.C, Pasquale, E.B.
Deposit date:2019-01-07
Release date:2019-05-01
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.033 Å)
Cite:Engineering nanomolar peptide ligands that differentially modulate EphA2 receptor signaling.
J.Biol.Chem., 294, 2019
4CX0
DownloadVisualize
BU of 4cx0 by Molmil
Structure of bovine endothelial nitric oxide synthase Y477A mutant heme domain in complex with 6-((((3S, 5R)-5-(((6-AMINO-4- METHYLPYRIDIN-2-YL)METHOXY)METHYL)PYRROLIDIN-3-YL)OXY)METHYL)-4- METHYLPYRIDIN-2-AMINE
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, 6-((((3S, 5R)-5-(((6-amino-4-methylpyridin-2-yl)methoxy)methyl)pyrrolidin-3-yl)oxy)methyl)-4-methylpyridin-2-amine, ...
Authors:Li, H, Poulos, T.L.
Deposit date:2014-04-03
Release date:2014-08-13
Last modified:2014-09-03
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Mobility of a Conserved Tyrosine Residue Controls Isoform-Dependent Enzyme-Inhibitor Interactions in Nitric Oxide Synthases.
Biochemistry, 53, 2014
6NQ2
DownloadVisualize
BU of 6nq2 by Molmil
Cryo-EM structure of human TPC2 channel in the ligand-bound closed state
Descriptor: (2R)-3-{[(S)-hydroxy{[(1S,2R,3R,4S,5S,6R)-2,4,6-trihydroxy-3,5-bis(phosphonooxy)cyclohexyl]oxy}phosphoryl]oxy}propane-1,2-diyl dioctanoate, Two pore calcium channel protein 2
Authors:She, J, Zeng, W, Guo, J, Chen, Q, Bai, X, Jiang, Y.
Deposit date:2019-01-18
Release date:2019-03-27
Last modified:2019-11-20
Method:ELECTRON MICROSCOPY (3.4 Å)
Cite:Structural mechanisms of phospholipid activation of the human TPC2 channel.
Elife, 8, 2019
4CSU
DownloadVisualize
BU of 4csu by Molmil
Cryo-EM structures of the 50S ribosome subunit bound with ObgE
Descriptor: 23S RRNA, 50S RIBOSOMAL PROTEIN L1, 50S RIBOSOMAL PROTEIN L11, ...
Authors:Feng, B, Mandava, C.S, Guo, Q, Wang, J, Cao, W, Li, N, Zhang, Y, Zhang, Y, Wang, Z, Wu, J, Sanyal, S, Lei, J, Gao, N.
Deposit date:2014-03-10
Release date:2014-06-04
Last modified:2024-05-08
Method:ELECTRON MICROSCOPY (5.5 Å)
Cite:Structural and Functional Insights Into the Mode of Action of a Universally Conserved Obg Gtpase.
Plos Biol., 12, 2014
4CTU
DownloadVisualize
BU of 4ctu by Molmil
Structure of rat neuronal nitric oxide synthase heme domain in complex with 6-(3-Amino-2-(3-(2-(6-amino-4-methylpyridin-2-yl)ethyl) phenyl)propyl)-4-methylpyridin-2-amine
Descriptor: 5,6,7,8-TETRAHYDROBIOPTERIN, 6-[(2R)-3-amino-2-{3-[2-(6-amino-4-methylpyridin-2-yl)ethyl]phenyl}propyl]-4-methylpyridin-2-amine, ACETATE ION, ...
Authors:Li, H, Poulos, T.L.
Deposit date:2014-03-15
Release date:2014-05-07
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.16 Å)
Cite:Nitric Oxide Synthase Inhibitors that Interact with Both a Heme Propionate and Tetrahydrobiopterin Show High Isoform Selectivity.
J.Med.Chem., 57, 2014

225946

건을2024-10-09부터공개중

PDB statisticsPDBj update infoContact PDBjnumon