PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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4PBT	Crystal structure of the M. jannaschii G2 tRNA synthetase variant bound to 4-trans-cyclooctene-amidopheylalanine (Tco-amF) Descriptor: 1-ETHOXY-2-(2-ETHOXYETHOXY)ETHANE, 4-{[(1R,4E)-cyclooct-4-en-1-ylcarbonyl]amino}-L-phenylalanine, GLYCEROL, ... Authors: Cooley, R.B, Karplus, P.A, Mehl, R.A. Deposit date: 2014-04-13 Release date: 2014-07-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Gleaning Unexpected Fruits from Hard-Won Synthetases: Probing Principles of Permissivity in Non-canonical Amino Acid-tRNA Synthetases. Chembiochem, 15, 2014
4PBS	Crystal structure of the M. jannaschii F9 tRNA synthetase variant bound to 4-(2-bromoisobutyramido)-phenylalanine (BibaF) Descriptor: 4-[(2-bromo-2-methylpropanoyl)amino]-L-phenylalanine, Tyrosine--tRNA ligase Authors: Cooley, R.B, Karplus, P.A, Mehl, R.A. Deposit date: 2014-04-13 Release date: 2014-07-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (2.011 Å) Cite: Gleaning Unexpected Fruits from Hard-Won Synthetases: Probing Principles of Permissivity in Non-canonical Amino Acid-tRNA Synthetases. Chembiochem, 15, 2014
1RKJ	Solution structure of the complex formed by the two N-terminal RNA-binding domains of nucleolin and a pre-rRNA target Descriptor: 5'-R(*GP*GP*AP*UP*GP*CP*CP*UP*CP*CP*CP*GP*AP*GP*UP*GP*CP*AP*UP*CP*C)-3', Nucleolin Authors: Johansson, C, Finger, L.D, Trantirek, L, Mueller, T.D, Kim, S, Laird-Offringa, I.A, Feigon, J. Deposit date: 2003-11-21 Release date: 2004-04-27 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of the complex formed by the two N-terminal RNA-binding domains of nucleolin and a pre-rRNA target. J.Mol.Biol., 337, 2004
2AP0	Solution Structure of the C27A ScYLV P1-P2 Frameshifting Pseudoknot, 20 Lowest Energy Structures Descriptor: C27A Sugarcane Yellow Leaf Virus RNA pseudoknot Authors: Cornish, P.V, Giedroc, D.P. Deposit date: 2005-08-15 Release date: 2006-09-05 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The global structures of a wild-type and poorly functional plant luteoviral mRNA pseudoknot are essentially identical Rna, 12, 2006
2AP5	Solution Structure of the C27A ScYLV P1-P2 Frameshifting Pseudoknot, Average Structure Descriptor: C27A Sugarcane Yellow Leaf Virus RNA pseudoknot Authors: Cornish, P.V, Giedroc, D.P. Deposit date: 2005-08-15 Release date: 2006-09-05 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The global structures of a wild-type and poorly functional plant luteoviral mRNA pseudoknot are essentially identical Rna, 12, 2006
4PBR	Crystal structure of the M. jannaschii G2 tRNA synthetase variant bound to 4-(2-bromoisobutyramido)-phenylalanine (BibaF) Descriptor: 4-[(2-bromo-2-methylpropanoyl)amino]-L-phenylalanine, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Cooley, R.B, Karplus, P.A, Mehl, R.A. Deposit date: 2014-04-13 Release date: 2014-07-23 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Gleaning Unexpected Fruits from Hard-Won Synthetases: Probing Principles of Permissivity in Non-canonical Amino Acid-tRNA Synthetases. Chembiochem, 15, 2014
4CNF	Crystal structure of Sulfolobus acidocaldarius TrmJ Descriptor: 5'-DEOXY-5'-METHYLTHIOADENOSINE, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Van Laer, B, Somme, J, Roovers, M, Steyaert, J, Droogmans, L, Versees, W. Deposit date: 2014-01-22 Release date: 2014-07-02 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Characterization of Two Homologous 2'-O-Methyltransferases Showing Different Specificities for Their tRNA Substrates. RNA, 20, 2014
4CNG	Crystal structure of Sulfolobus acidocaldarius TrmJ in complex with S-adenosyl-L-Homocysteine Descriptor: GLYCEROL, S-ADENOSYL-L-HOMOCYSTEINE, SPOU RRNA METHYLASE Authors: Van Laer, B, Somme, J, Roovers, M, Steyaert, J, Droogmans, L, Versees, W. Deposit date: 2014-01-22 Release date: 2014-07-02 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (1.1 Å) Cite: Characterization of Two Homologous 2'-O-Methyltransferases Showing Different Specificities for Their tRNA Substrates. RNA, 20, 2014
4HK4	Crystal structure of apo Tyrosine-tRNA ligase mutant protein Descriptor: DI(HYDROXYETHYL)ETHER, Tyrosine--tRNA ligase Authors: Yu, Y, Zhou, Q, Dong, J, Li, J, Xiaoxuan, L, Mukherjee, A, Ouyang, H, Nilges, M, Li, H, Gao, F, Gong, W, Lu, Y, Wang, J. Deposit date: 2012-10-15 Release date: 2013-04-17 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.298 Å) Cite: Crystal structure of apo Tyrosine-tRNA ligase mutant protein To be Published
4HPW	Crystal structure of Tyrosine-tRNA ligase mutant complexed with unnatural amino acid 3-o-methyl-Tyrosine Descriptor: 3-methoxy-L-tyrosine, Tyrosine--tRNA ligase Authors: Yu, Y, Zhou, Q, Dong, J, Li, J, Xiaoxuan, L, Mukherjee, A, Ouyang, H, Nilges, M, Li, H, Gao, F, Gong, W, Lu, Y, Wang, J. Deposit date: 2012-10-24 Release date: 2013-10-30 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.998 Å) Cite: Crystal structure of Tyrosine-tRNA ligase mutant complexed with unnatural amino acid 3-o-methyl-Tyrosine To be Published
7E8O	Crystal structure of proteinaceous RNase P(PRORP) from Planctomycetes bacterium GWF2_40_8 complexed with Escherichia coli histidine pre-tRNA Descriptor: CALCIUM ION, RNA-free ribonuclease P, histidine pre-tRNA Authors: Li, Y.Y, Gan, J.H. Deposit date: 2021-03-02 Release date: 2022-03-02 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.804 Å) Cite: Crystal structures and insights into precursor tRNA 5'-end processing by prokaryotic minimal protein-only RNase P. Nat Commun, 13, 2022
1CQ5	NMR STRUCTURE OF SRP RNA DOMAIN IV Descriptor: SRP RNA DOMAIN IV Authors: Schmitz, U, James, T.L, Behrens, S, Freymann, D.M, Lukavsky, P, Walter, P. Deposit date: 1999-08-05 Release date: 1999-08-23 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of the phylogenetically most conserved domain of SRP RNA. RNA, 5, 1999
1CQL	NMR STRUCTURE OF SRP RNA DOMAIN IV Descriptor: SRP DOMAIN IV RNA Authors: Schmitz, U, James, T.L. Deposit date: 1999-08-06 Release date: 2000-01-14 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of the phylogenetically most conserved domain of SRP RNA. RNA, 5, 1999
7CHD	AtaT complexed with acetyl-methionyl-tRNAfMet Descriptor: N-acetyltransferase domain-containing protein, RNA (77-MER) Authors: Yashiro, Y, Tomita, K. Deposit date: 2020-07-05 Release date: 2020-11-04 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (3.804 Å) Cite: Mechanism of aminoacyl-tRNA acetylation by an aminoacyl-tRNA acetyltransferase AtaT from enterohemorrhagic E. coli. Nat Commun, 11, 2020
5WLH	Crystal structure of LbaCas13a H328A (C2c2) bound to pre-crRNA (24-nt spacer) Descriptor: GLYCEROL, IODIDE ION, LbaCas13a H328A (C2c2), ... Authors: Knott, G.J, Doudna, J.A. Deposit date: 2017-07-26 Release date: 2017-09-13 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.80001032 Å) Cite: Guide-bound structures of an RNA-targeting A-cleaving CRISPR-Cas13a enzyme. Nat. Struct. Mol. Biol., 24, 2017
2ZP1	Structual basis of iodo-tyrosine recognition by engineered archeal tyrosyl-tRNA synthetase Descriptor: 3-IODO-TYROSINE, Tyrosyl-tRNA synthetase Authors: Oki, K, Kobayashi, T, Sakamoto, K, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2008-06-22 Release date: 2009-02-17 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structual Basis of Iodo-Tyrosine Recognition by Engineered Archeal Tyrosyl-tRNA Synthetase To be Published
1A1T	STRUCTURE OF THE HIV-1 NUCLEOCAPSID PROTEIN BOUND TO THE SL3 PSI-RNA RECOGNITION ELEMENT, NMR, 25 STRUCTURES Descriptor: NUCLEOCAPSID PROTEIN, SL3 STEM-LOOP RNA, ZINC ION Authors: De Guzman, R.N, Wu, Z.R, Stalling, C.C, Pappalardo, L, Borer, P.N, Summers, M.F. Deposit date: 1997-12-15 Release date: 1998-06-17 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of the HIV-1 nucleocapsid protein bound to the SL3 psi-RNA recognition element. Science, 279, 1998
1C2Q	SOLUTION STRUCTURE OF A DNA.RNA HYBRID CONTAINING AN ALPHAT-ANOMERIC THYMIDINE AND POLARITY REVERSALS Descriptor: 5'-D(ATGG-3'-3'-(T3P)-5'-5'-GCTC)-3', 5'-R(GAGCACCAU)-3' Authors: Germann, M.W, Aramini, J.M. Deposit date: 1999-07-26 Release date: 1999-11-29 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure of a DNA.RNA hybrid containing an alpha-anomeric thymidine and polarity reversals: d(ATGG-3'-3'-alphaT-5'-5'-GCTC). r(gagcaccau). Biochemistry, 38, 1999
6HMF	D-family DNA polymerase - DP1 subunit (3'-5' proof-reading exonuclease) H451 proof-reading deficient variant Descriptor: ACETATE ION, CACODYLATE ION, CALCIUM ION, ... Authors: Raia, P, Delarue, M, Sauguet, L. Deposit date: 2018-09-12 Release date: 2019-01-30 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of the DP1-DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases. PLoS Biol., 17, 2019
6HMS	Cryo-EM map of DNA polymerase D from Pyrococcus abyssi in complex with DNA Descriptor: DNA (5'-D(*GP*AP*GP*AP*CP*GP*GP*GP*CP*CP*GP*CP*GP*TP*C)-3'), DNA (5'-D(P*TP*GP*AP*CP*GP*CP*GP*GP*CP*CP*CP*GP*TP*CP*TP*C)-3'), DNA polymerase II large subunit,DNA polymerase II large subunit, ... Authors: Raia, P, Carroni, M, Sauguet, L. Deposit date: 2018-09-12 Release date: 2019-01-30 Last modified: 2024-05-15 Method: ELECTRON MICROSCOPY (7.1 Å) Cite: Structure of the DP1-DP2 PolD complex bound with DNA and its implications for the evolutionary history of DNA and RNA polymerases. PLoS Biol., 17, 2019
1F78	SOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-26 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F79	SOLUTION STRUCTURE OF RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT(III) HEXAMMINE, NMR, MINIMIZED AVERAGE STRUCTURE Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN MUTANT Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-23 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7H	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE, NMR, ENSEMBLE OF 11 STRUCTURES Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-27 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
1F7I	SOLUTION STRUCTURE OF THE RNASE P RNA (M1 RNA) P4 STEM C70U MUTANT OLIGORIBONUCLEOTIDE COMPLEXED WITH COBALT (III) HEXAMINE ,NMR, ENSEMBLE OF 12 STRUCTURES Descriptor: COBALT HEXAMMINE(III), RNASE P RNA RIBOZYME, P4 DOMAIN Authors: Schmitz, M, Tinoco Jr, I. Deposit date: 2000-06-27 Release date: 2000-10-09 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure and metal-ion binding of the P4 element from bacterial RNase P RNA. RNA, 6, 2000
4LWQ	Crystal structure of native peptidyl t-RNA hydrolase from Acinetobacter baumannii at 1.38A resolution Descriptor: GLYCEROL, Peptidyl-tRNA hydrolase Authors: Kaushik, S, Singh, N, Sinha, M, Kaur, P, Sharma, S, Singh, T.P. Deposit date: 2013-07-28 Release date: 2013-08-14 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.38 Å) Cite: Crystal structure of native peptidyl t-RNA hydrolase from Acinetobacter baumannii at 1.38A resolution To be Published

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