PDB: 238582 resultsInfo pagesStatus searchChemie searchBIRD

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6X99	Structure of proline utilization A with D-proline bound in the L-glutamate-gamma-semialdehyde dehydrogenase active site Descriptor: Bifunctional protein PutA, D-PROLINE, FLAVIN-ADENINE DINUCLEOTIDE, ... Authors: Tanner, J.J, Campbell, A.C. Deposit date: 2020-06-02 Release date: 2020-12-30 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.56 Å) Cite: Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-gamma-semialdehyde dehydrogenase active site of bifunctional proline utilization A. Arch.Biochem.Biophys., 698, 2020
6PHK	Crystal structure of glucagon analog with mono-stereoinversion at position 21 (D-Asp21) in space group I41 at 1.18 A resolution Descriptor: Glucagon Authors: Mroz, P.A, Gonzalez-Gutierrez, G, DiMarchi, R.D. Deposit date: 2019-06-25 Release date: 2020-07-01 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.18 Å) Cite: High resolution X-ray structure of glucagon and selected stereo-inversed analogs in novel crystallographic packing arrangement. To Be Published
6PHL	Crystal structure of glucagon analog with mono-stereoinversion at position 23 (D-Val23) in space group I41 at 1.44 A resolution Descriptor: Glucagon Authors: Mroz, P.A, Gonzalez-Gutierrez, G, DiMarchi, R.D. Deposit date: 2019-06-25 Release date: 2020-07-01 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (1.443 Å) Cite: High resolution X-ray structure of glucagon and selected stereo-inversed analogs in novel crystallographic packing arrangement. To Be Published
8XIX	KeDt3e within Co Descriptor: D-tagatose 3-epimerase Authors: Guo, D. Deposit date: 2023-12-20 Release date: 2024-12-25 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Production of D-psicose To Be Published
8XJ1	Structure of Apo-KeDt3e Descriptor: D-tagatose 3-epimerase Authors: Guo, D.Y. Deposit date: 2023-12-20 Release date: 2024-12-25 Method: X-RAY DIFFRACTION (2.16 Å) Cite: Production of D-psicose To Be Published
7YB3	SufS with D-cysteine for 1 min Descriptor: Cysteine desulfurase SufS, D-CYSTEINE, DI(HYDROXYETHYL)ETHER, ... Authors: Nakamura, R, Fujishiro, T. Deposit date: 2022-06-28 Release date: 2023-07-05 Last modified: 2025-04-09 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Visualizing thiazolidine ring formation in the reaction of D-cysteine and pyridoxal-5'-phosphate within L-cysteine desulfurase SufS. Biochem.Biophys.Res.Commun., 754, 2025
7X7W	The X-ray Crystallographic Structure of D-Psicose 3-epimerase from Clostridia bacterium Descriptor: D-PSICOSE 3-EPIMERASE, MANGANESE (II) ION Authors: Li, Z.F, Ban, X.F, Xie, X.F, Tian, Y.X, Li, C.M, Gu, Z.B. Deposit date: 2022-03-10 Release date: 2022-09-07 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (2.097 Å) Cite: Crystal structure of a novel homodimeric D-allulose 3-epimerase from a Clostridia bacterium Acta Crystallogr.,Sect.D, 78, 2022
7MSE	High-resolution crystal structure of hMIF2 with tartrate at the active site Descriptor: D-dopachrome decarboxylase, L(+)-TARTARIC ACID Authors: Murphy, E.L, Manjula, R, Murphy, J.W, Lolis, E. Deposit date: 2021-05-11 Release date: 2021-08-18 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.27 Å) Cite: A structurally preserved allosteric site in the MIF superfamily affects enzymatic activity and CD74 activation in D-dopachrome tautomerase. J.Biol.Chem., 297, 2021
6D4L	Joint X-ray/neutron structure of DNA oligonucleotide d(GTGGCCAC)2 with 2'-SeCH3 modification on Cyt5 Descriptor: DNA (5'-D(*GP*TP*GP*GP*(CSL)P*CP*AP*C)-3'), MAGNESIUM ION Authors: Kovalevsky, A, Huang, Z, Vandavasi, V.G. Deposit date: 2018-04-18 Release date: 2018-10-17 Last modified: 2023-10-04 Method: NEUTRON DIFFRACTION (1.56 Å), X-RAY DIFFRACTION Cite: Temperature-Induced Replacement of Phosphate Proton with Metal Ion Captured in Neutron Structures of A-DNA. Structure, 26, 2018
4WKM	AmpR effector binding domain from Citrobacter freundii bound to UDP-MurNAc-pentapeptide Descriptor: ALA-FGA-API-DAL-DAL, GLYCEROL, LysR family transcriptional regulator, ... Authors: Vadlamani, G, Reeve, T.M, Mark, B.L. Deposit date: 2014-10-02 Release date: 2014-12-17 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.15 Å) Cite: The beta-Lactamase Gene Regulator AmpR Is a Tetramer That Recognizes and Binds the d-Ala-d-Ala Motif of Its Repressor UDP-N-acetylmuramic Acid (MurNAc)-pentapeptide. J.Biol.Chem., 290, 2015
6D54	Low Temperature joint X-ray/neutron structure of DNA oligonucleotide d(GTGGCCAC)2 with 2'-SeCH3 modification on Cyt5 Descriptor: DNA (5'-D(*GP*TP*GP*GP*(CSL)P*CP*AP*C)-3'), MAGNESIUM ION Authors: Kovalevsky, A, Huang, Z, Vandavasi, V.G. Deposit date: 2018-04-19 Release date: 2018-10-17 Last modified: 2023-10-04 Method: NEUTRON DIFFRACTION (1.65 Å), X-RAY DIFFRACTION Cite: Temperature-Induced Replacement of Phosphate Proton with Metal Ion Captured in Neutron Structures of A-DNA. Structure, 26, 2018
6U1C	Apo form of Thermus thermophilus D-alanine-D-alanine ligase Descriptor: D-alanine--D-alanine ligase Authors: Pederick, J.L, Bruning, J.B. Deposit date: 2019-08-15 Release date: 2020-05-06 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.2 Å) Cite: d-Alanine-d-alanine ligase as a model for the activation of ATP-grasp enzymes by monovalent cations. J.Biol.Chem., 295, 2020
7C8Q	Blasnase-T13A with D-asn Descriptor: Asparaginase, D-ASPARAGINE, FORMIC ACID, ... Authors: Lu, F, Ran, T, Jiao, L, Wang, W. Deposit date: 2020-06-03 Release date: 2021-06-09 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.89 Å) Cite: Structures of l-asparaginase from Bacillus licheniformis Reveal an Essential Residue for its Substrate Stereoselectivity. J.Agric.Food Chem., 69, 2021
6N29	Crystal structure of monomeric von Willebrand Factor D`D3 assembly Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, DI(HYDROXYETHYL)ETHER, ... Authors: Dong, X, Arndt, J.W, Springer, T.A. Deposit date: 2018-11-12 Release date: 2019-01-23 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.5 Å) Cite: The von Willebrand factor D'D3 assembly and structural principles for factor VIII binding and concatemer biogenesis. Blood, 133, 2019
3EOV	Crystal structure of cyclophilin from Leishmania donovani ligated with cyclosporin A Descriptor: CYCLOSPORIN A, PEPTIDYL-PROLYL CIS-TRANS ISOMERASE Authors: Venugopal, V, Dasgupta, D, Datta, A.K, Banerjee, R. Deposit date: 2008-09-29 Release date: 2008-11-11 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of Cyclophilin from Leishmania Donovani Bound to Cyclosporin at 2.6 A Resolution: Correlation between Structure and Thermodynamic Data. Acta Crystallogr.,Sect.D, 65, 2009
3GPD	TWINNING IN CRYSTALS OF HUMAN SKELETAL MUSCLE D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE Descriptor: D-GLYCERALDEHYDE-3-PHOSPHATE DEHYDROGENASE, NICOTINAMIDE-ADENINE-DINUCLEOTIDE, SULFATE ION Authors: Watson, H.C, Campbell, J.C. Deposit date: 1983-06-20 Release date: 1983-10-27 Last modified: 2024-12-25 Method: X-RAY DIFFRACTION (3.5 Å) Cite: Twinning in crystals of human skeletal muscle D-glyceraldehyde-3-phosphate dehydrogenase. J.Mol.Biol., 104, 1976
4M6G	Structure of the Mycobacterium tuberculosis peptidoglycan amidase Rv3717 in complex with L-Alanine-iso-D-Glutamine reaction product Descriptor: ALANINE, D-alpha-glutamine, Peptidoglycan Amidase Rv3717, ... Authors: Prigozhin, D.M, Mavrici, D, Huizar, J.P, Vansell, H.J, Alber, T, TB Structural Genomics Consortium (TBSGC) Deposit date: 2013-08-09 Release date: 2013-09-18 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (2.104 Å) Cite: Structural and Biochemical Analyses of Mycobacterium tuberculosis N-Acetylmuramyl-L-alanine Amidase Rv3717 Point to a Role in Peptidoglycan Fragment Recycling. J.Biol.Chem., 288, 2013
4QE5	Room temperature X-ray structure of D-xylose isomerase in complex with two Mg2+ ions and L-ribulose Descriptor: MAGNESIUM ION, Xylose isomerase, alpha-L-ribulofuranose Authors: Kovalevsky, A.Y, Langan, P. Deposit date: 2014-05-15 Release date: 2014-09-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.56 Å) Cite: L-Arabinose Binding, Isomerization, and Epimerization by D-Xylose Isomerase: X-Ray/Neutron Crystallographic and Molecular Simulation Study. Structure, 22, 2014
4QE4	Room temperature X-ray structure of D-xylose isomerase in complex with two Ni2+ ions and L-ribulose Descriptor: NICKEL (II) ION, Xylose isomerase, beta-L-ribulofuranose Authors: Kovalevsky, A.Y, Langan, P. Deposit date: 2014-05-15 Release date: 2014-09-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.7 Å) Cite: L-Arabinose Binding, Isomerization, and Epimerization by D-Xylose Isomerase: X-Ray/Neutron Crystallographic and Molecular Simulation Study. Structure, 22, 2014
4QEH	Room temperature X-ray structure of D-xylose isomerase in complex with two Mg2+ ions and L-ribose Descriptor: MAGNESIUM ION, Xylose isomerase, beta-L-ribofuranose Authors: Kovalevsky, A.Y, Langan, P. Deposit date: 2014-05-16 Release date: 2014-09-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.55 Å) Cite: L-Arabinose Binding, Isomerization, and Epimerization by D-Xylose Isomerase: X-Ray/Neutron Crystallographic and Molecular Simulation Study. Structure, 22, 2014
2B4K	Acetobacter turbidans alpha-amino acid ester hydrolase complexed with phenylglycine Descriptor: Alpha-amino acid ester hydrolase, D-PHENYLGLYCINE, GLYCEROL Authors: Barends, T.R.M, Polderman-Tijmes, J.J, Jekel, P.A, Williams, C, Wybenga, G, Janssen, D.B, Dijkstra, B.W. Deposit date: 2005-09-26 Release date: 2005-12-27 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (3.3 Å) Cite: Acetobacter turbidans alpha-amino acid ester hydrolase: how a single mutation improves an antibiotic-producing enzyme. J.Biol.Chem., 281, 2006
5ZMY	Crystal structure of a cis-epoxysuccinate hydrolase producing D(-)-tartaric acids Descriptor: Cis-epoxysuccinate hydrolase, D(-)-TARTARIC ACID, ZINC ION Authors: Dong, S, Liu, X, Wang, X, Feng, Y. Deposit date: 2018-04-06 Release date: 2018-08-08 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Structural insight into the catalytic mechanism of a cis-epoxysuccinate hydrolase producing enantiomerically pure d(-)-tartaric acid. Chem. Commun. (Camb.), 54, 2018
4QDP	Joint X-ray and neutron structure of Streptomyces rubiginosus D-xylose isomerase in complex with two Cd2+ ions and cyclic beta-L-arabinose Descriptor: CADMIUM ION, Xylose isomerase, beta-L-arabinopyranose Authors: Kovalevsky, A.Y, Langan, P. Deposit date: 2014-05-14 Release date: 2014-09-03 Last modified: 2024-02-28 Method: NEUTRON DIFFRACTION (2 Å), X-RAY DIFFRACTION Cite: L-Arabinose Binding, Isomerization, and Epimerization by D-Xylose Isomerase: X-Ray/Neutron Crystallographic and Molecular Simulation Study. Structure, 22, 2014
4QE1	Room temperature X-ray structure of D-xylose isomerase in complex with two Cd2+ ions and L-ribulose Descriptor: CADMIUM ION, Xylose isomerase, alpha-L-ribulofuranose Authors: Kovalevsky, A.Y, Langan, P. Deposit date: 2014-05-15 Release date: 2014-09-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.55 Å) Cite: L-Arabinose Binding, Isomerization, and Epimerization by D-Xylose Isomerase: X-Ray/Neutron Crystallographic and Molecular Simulation Study. Structure, 22, 2014
4QEE	Room temperature X-ray structure of D-xylose isomerase in complex with two Ni2+ ions and L-ribose Descriptor: NICKEL (II) ION, Xylose isomerase, alpha-L-ribofuranose Authors: Kovalevsky, A.Y, Langan, P. Deposit date: 2014-05-15 Release date: 2014-09-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.6 Å) Cite: L-Arabinose Binding, Isomerization, and Epimerization by D-Xylose Isomerase: X-Ray/Neutron Crystallographic and Molecular Simulation Study. Structure, 22, 2014

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