PDB: 82129 resultsInfo pagesStatus searchChemie searchBIRD

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8U5R	Structure of Mango II variant aptamer bound to T01-6A Descriptor: Mango II variant, POTASSIUM ION, SODIUM ION Authors: Passalacqua, L.F.M, Ferre-D'Amare, A.R. Deposit date: 2023-09-12 Release date: 2024-03-27 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Structure of Mango II variant aptamer bound to T01-6A To Be Published
8U5F	Crystal Structure of Trypsinized Clostridium perfringens Enterotoxin Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, GLYCEROL, Heat-labile enterotoxin B chain, ... Authors: Kapoor, S, Ogbu, C.P, Vecchio, A.J. Deposit date: 2023-09-12 Release date: 2023-09-27 Last modified: 2023-12-20 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Structural Basis of Clostridium perfringens Enterotoxin Activation and Oligomerization by Trypsin. Toxins, 15, 2023
8U5E	Crystal Structure of C-terminal domain of Clostridium perfringens Enterotoxin in Space Group P 21 21 21 Descriptor: ACETATE ION, GLYCEROL, Heat-labile enterotoxin B chain, ... Authors: Kapoor, S, Vecchio, A.J. Deposit date: 2023-09-12 Release date: 2023-12-20 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Structural Basis of Clostridium perfringens Enterotoxin Activation and Oligomerization by Trypsin. Toxins, 15, 2023
8U5D	Crystal Structure of C-terminal domain of Clostridium perfringens Enterotoxin in Space Group P 41 21 2 Descriptor: ACETATE ION, GLYCEROL, Heat-labile enterotoxin B chain, ... Authors: Kapoor, S, Vecchio, A.J. Deposit date: 2023-09-12 Release date: 2023-12-20 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Structural Basis of Clostridium perfringens Enterotoxin Activation and Oligomerization by Trypsin. Toxins, 15, 2023
8U5B	Cryo-EM structure of human claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain and sFab COP-1 Descriptor: COP-1 sFab Heavy Chain, COP-1 sFab Light Chain, Claudin-4, ... Authors: Vecchio, A.J. Deposit date: 2023-09-12 Release date: 2023-09-27 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (5.3 Å) Cite: Structural and biophysical insights into targeting of claudin-4 by a synthetic antibody fragment. Commun Biol, 7, 2024
8U51	Klebsiella pneumoniae SUMO-loaded encapsulin shell Descriptor: Klebsiella pneumoniae family 1 encapsulin shell, SUMO-targeting peptide fusion protein Authors: Andreas, M.P, Jones, J.A, Giessen, T.W. Deposit date: 2023-09-11 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (2.41 Å) Cite: Structural basis for peroxidase encapsulation inside the encapsulin from the Gram-negative pathogen Klebsiella pneumoniae. Nat Commun, 15, 2024
8U50	Klebsiella pneumoniae DyP peroxidase-loaded encapsulin shell Descriptor: Klebsiella pneumoniae family 1 encapsulin shell Authors: Andreas, M.P, Jones, J.A, Giessen, T.W. Deposit date: 2023-09-11 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (2.52 Å) Cite: Structural basis for peroxidase encapsulation inside the encapsulin from the Gram-negative pathogen Klebsiella pneumoniae. Nat Commun, 15, 2024
8U4Z	Klebsiella pneumoniae encapsulin-associated DyP peroxidase Descriptor: Family 1 encapsulin-associated DyP peroxidase, Mesoheme Authors: Andreas, M.P, Jones, J.A, Giessen, T.W. Deposit date: 2023-09-11 Release date: 2024-04-24 Method: ELECTRON MICROSCOPY (2.39 Å) Cite: Structural basis for peroxidase encapsulation inside the encapsulin from the Gram-negative pathogen Klebsiella pneumoniae. Nat Commun, 15, 2024
8U4V	Cryo-EM structure of human claudin-4 complex with Clostridium perfringens enterotoxin C-terminal domain, sFab COP-1, and Nanobody Descriptor: Anti-fab nanobody, COP-1 sFab Heavy Chain, COP-1 sFab Light Chain, ... Authors: Vecchio, A.J. Deposit date: 2023-09-11 Release date: 2023-10-25 Last modified: 2024-07-03 Method: ELECTRON MICROSCOPY (2.99 Å) Cite: Structural and biophysical insights into targeting of claudin-4 by a synthetic antibody fragment. Commun Biol, 7, 2024
8U4T	Structure of tetrameric CXCR4 in complex with REGN7663 Fab Descriptor: (2R)-1-(hexadecanoyloxy)-3-(phosphonooxy)propan-2-yl (9Z)-octadec-9-enoate, C-X-C chemokine receptor type 4, CHOLESTEROL, ... Authors: Saotome, K, McGoldrick, L.L, Franklin, M.C. Deposit date: 2023-09-11 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (3.38 Å) Cite: Structural insights into CXCR4 modulation and oligomerization Biorxiv, 2024
8U4S	Structure of trimeric CXCR4 in complex with REGN7663 Fab Descriptor: (2R)-1-(hexadecanoyloxy)-3-(phosphonooxy)propan-2-yl (9Z)-octadec-9-enoate, C-X-C chemokine receptor type 4, CHOLESTEROL, ... Authors: Saotome, K, McGoldrick, L.L, Franklin, M.C. Deposit date: 2023-09-11 Release date: 2024-03-13 Method: ELECTRON MICROSCOPY (3.35 Å) Cite: Structural insights into CXCR4 modulation and oligomerization Biorxiv, 2024
8U4F	Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9 in Complex with Cellohexaose Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ... Authors: Araujo, E.A, Polikarpov, I. Deposit date: 2023-09-10 Release date: 2024-02-14 Method: X-RAY DIFFRACTION (2.01 Å) Cite: Molecular mechanism of cellulose depolymerization by the two-domain BlCel9A enzyme from the glycoside hydrolase family 9. Carbohydr Polym, 329, 2024
8U4A	Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9 in Complex with Cellotriose Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, CHLORIDE ION, ... Authors: Araujo, E.A, Polikarpov, I. Deposit date: 2023-09-10 Release date: 2024-02-14 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Molecular mechanism of cellulose depolymerization by the two-domain BlCel9A enzyme from the glycoside hydrolase family 9. Carbohydr Polym, 329, 2024
8U49	The Apo Crystal Structure of BlCel9A from Glycoside Hydrolase Family 9 Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CALCIUM ION, ... Authors: Araujo, E.A, Polikarpov, I. Deposit date: 2023-09-10 Release date: 2024-02-14 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Molecular mechanism of cellulose depolymerization by the two-domain BlCel9A enzyme from the glycoside hydrolase family 9. Carbohydr Polym, 329, 2024
8U3Z	Model of TTLL6 bound to microtubule from composite map Descriptor: ADENOSINE-5'-TRIPHOSPHATE, GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... Authors: Mahalingan, K.K, Grotjahn, D, Li, Y, Lander, G.C, Zehr, E.A, Roll-Mecak, A. Deposit date: 2023-09-08 Release date: 2024-05-29 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Structural basis for alpha-tubulin-specific and modification state-dependent glutamylation. Nat.Chem.Biol., 2024
8U3K	DdmDE handover complex Descriptor: DNA (29-MER), DNA (5'-D(P*GP*GP*AP*AP*AP*TP*GP*TP*TP*GP*AP*AP*TP*AP*C)-3'), DNA (5'-D(P*TP*TP*TP*TP*TP*TP*TP*TP*TP*TP*T)-3'), ... Authors: Bravo, J.P.K. Deposit date: 2023-09-07 Release date: 2024-07-10 Method: ELECTRON MICROSCOPY (2.5 Å) Cite: Plasmid targeting and destruction by the DdmDE bacterial defence system. Nature, 630, 2024
8U3B	Cryo-EM structure of E. coli NarL-transcription activation complex at 3.2A Descriptor: DNA (69-MER), DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, ... Authors: Liu, B, Kompaniiets, D, Wang, D. Deposit date: 2023-09-07 Release date: 2024-01-17 Last modified: 2024-02-21 Method: ELECTRON MICROSCOPY (3.23 Å) Cite: Structural basis for transcription activation by the nitrate-responsive regulator NarL. Nucleic Acids Res., 52, 2024
8U37	Crystal structure of the catalytic domain of human PKC alpha (D463N, V568I, S657E) in complex with NVP-CJL037 at 2.48-A resolution Descriptor: (6M)-3-amino-N-{4-[(3R,4S)-4-amino-3-methoxypiperidin-1-yl]pyridin-3-yl}-6-[3-(trifluoromethoxy)pyridin-2-yl]pyrazine-2-carboxamide, MAGNESIUM ION, Protein kinase C alpha type Authors: Romanowski, M.J, Lam, J, Visser, M. Deposit date: 2023-09-07 Release date: 2024-01-24 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (2.48 Å) Cite: Discovery of Darovasertib (NVP-LXS196), a Pan-PKC Inhibitor for the Treatment of Metastatic Uveal Melanoma. J.Med.Chem., 67, 2024
8U31	Crystal structure of PD-1 in complex with a Fab Descriptor: Fab heavy chain, Fab light chain, GLYCEROL, ... Authors: Sun, D, Masureel, M. Deposit date: 2023-09-07 Release date: 2024-06-19 Method: X-RAY DIFFRACTION (2.73 Å) Cite: Structure- and machine learning-guided engineering demonstrate that a non-canonical disulfide in an anti-PD-1 rabbit antibody does not impede antibody developability. Mabs, 16, 2024
8U2X	Crystal Structure of NendoU (Uridylate-specific endoribonuclease, nsp15) from Betacoronavirus SARS-CoV-2 (H235A mutant) Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CHLORIDE ION, Uridylate-specific endoribonuclease nsp15 Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-09-06 Release date: 2023-09-13 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Crystal Structure of NendoU (Uridylate-specific endoribonuclease, nsp15) from Betacoronavirus SARS-CoV-2 (H235A mutant) To be published
8U2U	Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (CoA, AMP and potassium bound) Descriptor: ADENOSINE MONOPHOSPHATE, Acetyl-coenzyme A synthetase, CHLORIDE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-09-06 Release date: 2023-09-13 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (CoA, AMP and potassium bound) To be published
8U2S	Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (Ethyl AMP bound, P21 form) Descriptor: 5'-O-[(S)-ethoxy(hydroxy)phosphoryl]adenosine, Acetyl-coenzyme A synthetase, CACODYLATE ION, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-09-06 Release date: 2023-09-13 Method: X-RAY DIFFRACTION (2.52 Å) Cite: Crystal Structure of Acetyl-coenzyme A synthetase from Leishmania infantum (Ethyl AMP bound, P21 form) To be published
8U2O	Crystal Structure of Cdk-related protein kinase 6 (PK6) from Plasmodium falciparum in complex with inhibitor TCMDC-123995 Descriptor: CHLORIDE ION, GLYCEROL, N-[(4P)-2-(4-chloroanilino)-4'-methyl[4,5'-bi-1,3-thiazol]-2'-yl]acetamide, ... Authors: Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2023-09-06 Release date: 2023-09-27 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Crystal Structure of Cdk-related protein kinase 6 (PK6) from Plasmodium falciparum in complex with inhibitor TCMDC-123995 To be published
8U2E	Bruton's tyrosine kinase in complex with N-[(2R)-1-[(3R)-3-(methylcarbamoyl)-1H,2H,3H,4H,9H-pyrido[3,4-b]indol-2-yl]-3-(3-methylphenyl)-1-oxopropan-2-yl]-1H-indazole-5-carboxamide Descriptor: (2S)-6-fluoro-5-[(3S)-3-(3-methyl-2-oxoimidazolidin-1-yl)piperidin-1-yl]-2-(4-methylpiperazine-1-carbonyl)-2,3,4,9-tetrahydro-1H-carbazole-8-carboxamide, 1,2-ETHANEDIOL, CHLORIDE ION, ... Authors: Gajewski, S, Clifton, M.C. Deposit date: 2023-09-05 Release date: 2024-01-31 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Discovery and Preclinical Pharmacology of NX-2127, an Orally Bioavailable Degrader of Bruton's Tyrosine Kinase with Immunomodulatory Activity for the Treatment of Patients with B Cell Malignancies. J.Med.Chem., 67, 2024
8U2D	Bruton's tyrosine kinase in complex with N-[(2R)-1-[(3R)-3-(methylcarbamoyl)-1H,2H,3H,4H,9H-pyrido[3,4-b]indol-2-yl]-3-(3-methylphenyl)-1-oxopropan-2-yl]-1H-indazole-5-carboxamide Descriptor: (3R)-2-[N-(1H-indazole-5-carbonyl)-3-methyl-D-phenylalanyl]-N-methyl-2,3,4,9-tetrahydro-1H-pyrido[3,4-b]indole-3-carboxamide, 1,2-ETHANEDIOL, CHLORIDE ION, ... Authors: Gajewski, S, Clifton, M.C. Deposit date: 2023-09-05 Release date: 2024-01-31 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Discovery and Preclinical Pharmacology of NX-2127, an Orally Bioavailable Degrader of Bruton's Tyrosine Kinase with Immunomodulatory Activity for the Treatment of Patients with B Cell Malignancies. J.Med.Chem., 67, 2024

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