PDB: 2035 resultsInfo pagesStatus searchChemie searchBIRD

---

6L26	Neutron crystal structure of the mutant green fluorescent protein (EGFP) Descriptor: Green fluorescent protein, trideuteriooxidanium Authors: Adachi, M, Shimizu, R, Shibazaki, C, Kagotani, Y, Ostermann, A, Schrader, T.E. Deposit date: 2019-10-02 Release date: 2020-04-08 Last modified: 2023-11-22 Method: NEUTRON DIFFRACTION (1.444 Å) Cite: Direct Observation of the Protonation States in the Mutant Green Fluorescent Protein. J Phys Chem Lett, 11, 2020
6KRG	Crystal structure of sfGFP Y182TMSiPhe Descriptor: CHLORIDE ION, GLYCEROL, Green fluorescent protein, ... Authors: Sun, J.P, Wang, J.Y, Zhu, Z.L, He, Q.T, Xiao, P. Deposit date: 2019-08-21 Release date: 2020-09-09 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.4 Å) Cite: DeSiphering receptor core-induced and ligand-dependent conformational changes in arrestin via genetic encoded trimethylsilyl 1 H-NMR probe. Nat Commun, 11, 2020
6KL1	Crystal structure of the S65T/F99S/M153T/V163A variant of non-deuterated GFP at pD 8.5 Descriptor: Green fluorescent protein Authors: Tai, Y, Takaba, K, Hanazono, Y, Dao, H.A, Miki, K, Takeda, K. Deposit date: 2019-07-28 Release date: 2019-12-11 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (0.851 Å) Cite: X-ray crystallographic studies on the hydrogen isotope effects of green fluorescent protein at sub-angstrom resolutions Acta Crystallogr.,Sect.D, 75, 2019
6KL0	Crystal structure of the S65T/F99S/M153T/V163A variant of perdeuterated GFP at pD 7.0 Descriptor: Green fluorescent protein Authors: Tai, Y, Takaba, K, Hanazono, Y, Miki, K, Takeda, K. Deposit date: 2019-07-28 Release date: 2019-12-11 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (0.798 Å) Cite: X-ray crystallographic studies on the hydrogen isotope effects of green fluorescent protein at sub-angstrom resolutions Acta Crystallogr.,Sect.D, 75, 2019
6KKZ	Crystal structure of the S65T/F99S/M153T/V163A variant of perdeuterated GFP at pD 8.5 Descriptor: Green fluorescent protein Authors: Tai, Y, Takaba, K, Hanazono, Y, Dao, H.A, Miki, K, Takeda, K. Deposit date: 2019-07-28 Release date: 2019-12-11 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (0.9 Å) Cite: X-ray crystallographic studies on the hydrogen isotope effects of green fluorescent protein at sub-angstrom resolutions Acta Crystallogr.,Sect.D, 75, 2019
6KII	photolyase from Arthrospira platensis Descriptor: 5,10-METHENYL-6,7,8-TRIHYDROFOLIC ACID, Deoxyribopyrimidine photolyase, FLAVIN-ADENINE DINUCLEOTIDE, ... Authors: Yan, H, Zhu, K. Deposit date: 2019-07-18 Release date: 2020-07-22 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.6 Å) Cite: A newly identified photolyase from Arthrospira platensis possesses a unique methenyltetrahydrofolate chromophore-binding pattern. Febs Lett., 594, 2020
6KE6	3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome Descriptor: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... Authors: Du, Y, Ye, K, An, W. Deposit date: 2019-07-03 Release date: 2020-08-05 Last modified: 2024-03-27 Method: ELECTRON MICROSCOPY (3.4 Å) Cite: 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome To be published
6K2Z	Human Galectin-14 with lactose Descriptor: Placental protein 13-like, beta-D-galactopyranose-(1-4)-alpha-D-glucopyranose, beta-D-galactopyranose-(1-4)-beta-D-glucopyranose Authors: Su, J. Deposit date: 2019-05-15 Release date: 2020-06-17 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure-function studies of galectin-14, an important effector molecule in embryology. Febs J., 288, 2021
6K2Y	Human Galectin-14 Descriptor: Placental protein 13-like Authors: Su, J. Deposit date: 2019-05-15 Release date: 2020-06-17 Last modified: 2021-03-10 Method: X-RAY DIFFRACTION (1.57 Å) Cite: Structure-function studies of galectin-14, an important effector molecule in embryology. Febs J., 288, 2021
6JGJ	Crystal structure of the F99S/M153T/V163A/E222Q variant of GFP at 0.78 A Descriptor: Green fluorescent protein, MAGNESIUM ION Authors: Takaba, K, Tai, Y, Hanazono, Y, Miki, K, Takeda, K. Deposit date: 2019-02-14 Release date: 2019-04-17 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (0.78 Å) Cite: Subatomic resolution X-ray structures of green fluorescent protein. Iucrj, 6, 2019
6JGI	Crystal structure of the S65T/F99S/M153T/V163A variant of GFP at 0.85 A Descriptor: Green fluorescent protein Authors: Tai, Y, Takaba, K, Hanazono, Y, Miki, K, Takeda, K. Deposit date: 2019-02-14 Release date: 2019-04-17 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (0.85 Å) Cite: Subatomic resolution X-ray structures of green fluorescent protein. Iucrj, 6, 2019
6JGH	Crystal structure of the F99S/M153T/V163A/T203I variant of GFP at 0.94 A Descriptor: CHLORIDE ION, Green fluorescent protein Authors: Eki, H, Tai, Y, Takaba, K, Hanazono, Y, Miki, K, Takeda, K. Deposit date: 2019-02-14 Release date: 2019-04-17 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (0.94 Å) Cite: Subatomic resolution X-ray structures of green fluorescent protein. Iucrj, 6, 2019
6ITC	Structure of a substrate engaged SecA-SecY protein translocation machine Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, ADENOSINE-5'-DIPHOSPHATE, BERYLLIUM TRIFLUORIDE ION, ... Authors: Ma, C.Y, Wu, X.F, Sun, D.J, Park, E.Y, Rapoport, T.A, Gao, N, Long, L. Deposit date: 2018-11-21 Release date: 2019-06-12 Last modified: 2023-11-15 Method: ELECTRON MICROSCOPY (3.45 Å) Cite: Structure of the substrate-engaged SecA-SecY protein translocation machine. Nat Commun, 10, 2019
6IR7	Green fluorescent protein variant GFPuv with the modification to 6-hydroxynorleucine at the C-terminus Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, 6-HYDROXY-L-NORLEUCINE, Green fluorescent protein, ... Authors: Nakatani, T, Yasui, N, Yamashita, A. Deposit date: 2018-11-12 Release date: 2019-04-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.277 Å) Cite: Specific modification at the C-terminal lysine residue of the green fluorescent protein variant, GFPuv, expressed in Escherichia coli. Sci Rep, 9, 2019
6IR6	Green fluorescent protein variant GFPuv with the native lysine residue at the C-terminus Descriptor: Green fluorescent protein, SULFATE ION Authors: Nakatani, T, Yasui, N, Yamashita, A. Deposit date: 2018-11-12 Release date: 2019-04-03 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.642 Å) Cite: Specific modification at the C-terminal lysine residue of the green fluorescent protein variant, GFPuv, expressed in Escherichia coli. Sci Rep, 9, 2019
6IR2	Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM2 at 1.4 Angstron resolution Descriptor: MCherry fluorescent protein, mCherry's nanobody LaM2 Authors: Ding, Y, Wang, Z.Y, Hu, R.T, Chen, X. Deposit date: 2018-11-09 Release date: 2019-11-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.393 Å) Cite: Structural insights into the binding of nanobodies LaM2 and LaM4 to the red fluorescent protein mCherry. Protein Sci., 30, 2021
6IR1	Crystal structure of red fluorescent protein mCherry complexed with the nanobody LaM4 at 1.9 Angstron resolution Descriptor: MCherry fluorescent protein, mCherry's nanobody LaM4 Authors: Ding, Y, Wang, Z.Y, Hu, R.T, Chen, X. Deposit date: 2018-11-09 Release date: 2019-11-13 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.919 Å) Cite: Structural insights into the binding of nanobodies LaM2 and LaM4 to the red fluorescent protein mCherry. Protein Sci., 30, 2021
6IP8	Cryo-EM structure of the HCV IRES dependently initiated CMV-stalled 80S ribosome (Structure iv) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. Deposit date: 2018-11-02 Release date: 2019-05-29 Last modified: 2019-11-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
6IP6	Cryo-EM structure of the CMV-stalled human 80S ribosome with HCV IRES (Structure iii) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. Deposit date: 2018-11-02 Release date: 2019-05-29 Last modified: 2019-11-06 Method: ELECTRON MICROSCOPY (4.5 Å) Cite: HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
6IP5	Cryo-EM structure of the CMV-stalled human 80S ribosome (Structure ii) Descriptor: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... Authors: Yokoyama, T, Shigematsu, H, Shirouzu, M, Imataka, H, Ito, T. Deposit date: 2018-11-02 Release date: 2019-05-29 Last modified: 2019-11-06 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: HCV IRES Captures an Actively Translating 80S Ribosome. Mol.Cell, 74, 2019
6I7O	The structure of a di-ribosome (disome) as a unit for RQC and NGD quality control pathways recognition. Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Tesina, P, Cheng, J, Becker, T, Beckmann, R. Deposit date: 2018-11-16 Release date: 2019-01-16 Last modified: 2019-03-13 Method: ELECTRON MICROSCOPY (5.3 Å) Cite: Collided ribosomes form a unique structural interface to induce Hel2-driven quality control pathways. EMBO J., 38, 2019
6HWP	Structure of A3_bGFPD, an artificial bi-domain protein based on two different alphaRep domains : A3 and a GFP binding domain (bGFPD) Descriptor: A3_bGFPD, MALONATE ION, SODIUM ION Authors: Li de la Sierra-Gallay, I, Leger, C. Deposit date: 2018-10-12 Release date: 2018-10-24 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.547 Å) Cite: Ligand-induced conformational switch in an artificial bidomain protein scaffold. Sci Rep, 9, 2019
6HUT	GFP8 - a stabilized variant of cycle-3 GFP Descriptor: Green fluorescent protein Authors: Petek, M, Rangel Pereira, M. Deposit date: 2018-10-09 Release date: 2020-01-22 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.29 Å) Cite: GFP8 - a stabilized variant of cycle-3 GFP To Be Published
6HR1	Crystal structure of the YFPnano fusion protein Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, GLYCEROL, ... Authors: Benoit, R.M. Deposit date: 2018-09-26 Release date: 2020-04-08 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.901 Å) Cite: Chimeric single alpha-helical domains as rigid fusion protein connections for protein nanotechnology and structural biology. Structure, 2021
6HOL	Structure of ATG14 LIR motif bound to GABARAPL1 Descriptor: Beclin 1-associated autophagy-related key regulator, GLYCEROL, Gamma-aminobutyric acid receptor-associated protein-like 1, ... Authors: Mouilleron, S, Birgisdottir, A.B, Bhujbal, Z, Wirth, M, Sjottem, E, Evjen, G, Zhang, W, Lee, R, O'Reilly, N, Tooze, S, Lamark, T, Johansen, T. Deposit date: 2018-09-17 Release date: 2019-02-27 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Members of the autophagy class III phosphatidylinositol 3-kinase complex I interact with GABARAP and GABARAPL1 via LIR motifs. Autophagy, 15, 2019

<30313233343536373839404142434445>