PDB: 1507 resultsInfo pagesStatus searchChemie searchBIRD

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5VNZ	Structure of a TRAF6-Ubc13~Ub complex Descriptor: TNF receptor-associated factor 6, Ubiquitin, Ubiquitin-conjugating enzyme E2 N, ... Authors: Middleton, A.J, Day, C.L. Deposit date: 2017-05-01 Release date: 2017-12-06 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3.41 Å) Cite: The activity of TRAF RING homo- and heterodimers is regulated by zinc finger 1. Nat Commun, 8, 2017
5XIT	Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form II Descriptor: E3 ubiquitin-protein ligase RNF168, GLYCEROL, PRASEODYMIUM ION, ... Authors: Takahashi, T.S, Sato, Y, Fukai, S. Deposit date: 2017-04-27 Release date: 2018-03-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168. Nat Commun, 9, 2018
5XIS	Crystal structure of RNF168 UDM1 in complex with Lys63-linked diubiquitin, form I Descriptor: E3 ubiquitin-protein ligase RNF168, MAGNESIUM ION, Ubiquitin-40S ribosomal protein S27a, ... Authors: Takahashi, T.S, Sato, Y, Fukai, S. Deposit date: 2017-04-27 Release date: 2018-03-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168. Nat Commun, 9, 2018
5XIU	Crystal structure of RNF168 UDM2 in complex with Lys63-linked diubiquitin Descriptor: 1,2-ETHANEDIOL, E3 ubiquitin-protein ligase RNF168, Ubiquitin-40S ribosomal protein S27a Authors: Takahashi, T.S, Sato, Y, Fukai, S. Deposit date: 2017-04-27 Release date: 2018-03-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insights into two distinct binding modules for Lys63-linked polyubiquitin chains in RNF168. Nat Commun, 9, 2018
5VIX	Crystal structure of Polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 Descriptor: NITRATE ION, Polyubiquitin Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2017-04-17 Release date: 2017-05-24 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.55 Å) Cite: Crystal structure of polyubiquitin with 3 ub domains, domains 1 and 2, from Naegleria fowleri ATCC 30863 TO BE PUBLISHED
5VF0	Solution NMR structure of human RAD18 (198-240) in complex with ubiquitin Descriptor: E3 ubiquitin-protein ligase RAD18, Polyubiquitin-B, ZINC ION Authors: Hu, Q, Botuyan, M.V, Mer, G. Deposit date: 2017-04-06 Release date: 2017-05-17 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18. Mol. Cell, 66, 2017
5VEY	Solution NMR structure of histone H2A-H2B mono-ubiquitylated at H2A Lys15 in complex with RNF169 (653-708) Descriptor: E3 ubiquitin-protein ligase RNF169, Histone H2B type 1-J,Histone H2A type 1-B/E, Polyubiquitin-B Authors: Hu, Q, Botuyan, M.V, Cui, G, Mer, G. Deposit date: 2017-04-06 Release date: 2017-05-17 Last modified: 2022-02-23 Method: SOLUTION NMR Cite: Mechanisms of Ubiquitin-Nucleosome Recognition and Regulation of 53BP1 Chromatin Recruitment by RNF168/169 and RAD18. Mol. Cell, 66, 2017
5NMC	Crystal structure of Zn3-hUb(human ubiquitin) adduct from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM hUb Descriptor: ACETATE ION, Polyubiquitin-C, ZINC ION Authors: Fermani, S, Falini, G. Deposit date: 2017-04-05 Release date: 2017-05-03 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NL4	Crystal structure of Zn1.3-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/1.3 mM E16V hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Fermani, S, Falini, G. Deposit date: 2017-04-04 Release date: 2017-04-26 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.32 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLI	Crystal structure of Zn2-E16V human ubiquitin (hUb) mutant adduct, from a solution 35 mM zinc acetate/10% v/v TFE/1.3 mM E16V hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-C, ... Authors: Fermani, S, Falini, G. Deposit date: 2017-04-04 Release date: 2017-05-03 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NL5	Crystal structure of Zn1.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/1.3 mM E16V hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, Polyubiquitin-B, ... Authors: Fermani, S, Falini, G. Deposit date: 2017-04-04 Release date: 2017-04-26 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.96 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLF	Crystal structure of Zn2.7-E16V human ubiquitin (hUb) mutant adduct, from a solution 100 mM zinc acetate/1.3 mM E16V hUb Descriptor: ACETATE ION, Polyubiquitin-C, ZINC ION Authors: Fermani, S, Falini, G. Deposit date: 2017-04-04 Release date: 2017-05-03 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.5 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5NLJ	Crystal structure of Zn3-E16V human ubiquitin (hUb) mutant adduct, from a solution 70 mM zinc acetate/20% v/v TFE/1.3 mM E16V hUb Descriptor: 1,2-ETHANEDIOL, ACETATE ION, DI(HYDROXYETHYL)ETHER, ... Authors: Fermani, S, Falini, G. Deposit date: 2017-04-04 Release date: 2017-04-26 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.53 Å) Cite: Aggregation Pathways of Native-Like Ubiquitin Promoted by Single-Point Mutation, Metal Ion Concentration, and Dielectric Constant of the Medium. Chemistry, 24, 2018
5XDP	K11/48-branched teraubiquitin Descriptor: D-ubiquitin, ubiquitin-B Authors: Liang, L, Gao, S, Tang, S. Deposit date: 2017-03-28 Release date: 2017-04-19 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.376 Å) Cite: K11/48-branched teraubiquitin To Be Published
5V8T	Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354 Descriptor: 2-{[3,5-bis(2-methoxyethoxy)benzene-1-carbonyl]amino}ethyl (2S)-1-(benzylsulfonyl)piperidine-2-carboxylate, FORMIC ACID, MAGNESIUM ION, ... Authors: Lorimer, D.D, Dranow, D.M, Seufert, F, Abendroth, J, Holzgrabe, U. Deposit date: 2017-03-22 Release date: 2018-03-14 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of SMT fusion Peptidyl-prolyl cis-trans isomerase from Burkholderia pseudomallei complexed with SF354 to be published
5XBO	Lanthanoid tagging via an unnatural amino acid for protein structure characterization Descriptor: Polyubiquitin-B, TERBIUM(III) ION, UV excision repair protein RAD23 homolog A Authors: Jiang, W, Gu, X, Dong, X, Tang, C. Deposit date: 2017-03-21 Release date: 2017-05-31 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Lanthanoid tagging via an unnatural amino acid for protein structure characterization J. Biomol. NMR, 67, 2017
5NDG	Crystal structure of geneticin (G418) bound to the yeast 80S ribosome Descriptor: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... Authors: Prokhorova, I, Djumagulov, M, Urzhumtsev, A, Yusupov, M, Yusupova, G. Deposit date: 2017-03-08 Release date: 2017-12-13 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.7 Å) Cite: Aminoglycoside interactions and impacts on the eukaryotic ribosome. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
5V1Z	Crystal structure of the RPN13 PRU-RPN2 (932-953)-ubiquitin complex Descriptor: 26S proteasome non-ATPase regulatory subunit 1, Proteasomal ubiquitin receptor ADRM1, Ubiquitin Authors: Hemmis, C.W, VanderLinden, R.T, Yao, T, Robinson, H, Hill, C.P. Deposit date: 2017-03-02 Release date: 2017-05-03 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure and energetics of pairwise interactions between proteasome subunits RPN2, RPN13, and ubiquitin clarify a substrate recruitment mechanism. J. Biol. Chem., 292, 2017
5V1Y	Crystal structure of the ternary RPN13 PRU-RPN2 (940-953)-ubiquitin complex Descriptor: 26S proteasome non-ATPase regulatory subunit 1, Proteasomal ubiquitin receptor ADRM1, Ubiquitin Authors: Hemmis, C.W, VanderLinden, R.T, Yao, T, Robinson, H, Hill, C.P. Deposit date: 2017-03-02 Release date: 2017-05-03 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (1.421 Å) Cite: Structure and energetics of pairwise interactions between proteasome subunits RPN2, RPN13, and ubiquitin clarify a substrate recruitment mechanism. J. Biol. Chem., 292, 2017
5N9V	NMR solution structure of ubl5 domain from polyubiquitin locus of T.thermophila. Descriptor: NAD(P)(+)--arginine ADP-ribosyltransferase Authors: Chiarini, V, Tossavainen, H. Deposit date: 2017-02-27 Release date: 2018-03-21 Last modified: 2024-06-19 Method: SOLUTION NMR Cite: NMR structure of a non-conjugatable, ADP-ribosylation associated, ubiquitin-like domain from Tetrahymena thermophila polyubiquitin locus. Biochim Biophys Acta Gen Subj, 1863, 2019
5N4W	Crystal structure of the Cul2-Rbx1-EloBC-VHL ubiquitin ligase complex Descriptor: Cullin-2, E3 ubiquitin-protein ligase RBX1, Elongin-B, ... Authors: Cardote, T.A.F, Gadd, M.S, Ciulli, A. Deposit date: 2017-02-11 Release date: 2017-06-07 Last modified: 2024-05-01 Method: X-RAY DIFFRACTION (3.9 Å) Cite: Crystal Structure of the Cul2-Rbx1-EloBC-VHL Ubiquitin Ligase Complex. Structure, 25, 2017
5N2W	WT-Parkin and pUB complex Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin, Polyubiquitin-B, ... Authors: Kumar, A, Chaugule, V.K, Johnson, C, Toth, R, Sundaramoorthy, R, Knebel, A, Walden, H. Deposit date: 2017-02-08 Release date: 2017-04-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.68 Å) Cite: Parkin-phosphoubiquitin complex reveals cryptic ubiquitin-binding site required for RBR ligase activity. Nat. Struct. Mol. Biol., 24, 2017
5N38	S65DParkin and pUB complex Descriptor: CHLORIDE ION, DI(HYDROXYETHYL)ETHER, E3 ubiquitin-protein ligase parkin,E3 ubiquitin-protein ligase parkin, ... Authors: Kumar, A, Chaugule, V.K, Johnson, C, Toth, R, Sundaramoorthy, R, Knebel, A, Walden, H. Deposit date: 2017-02-08 Release date: 2017-04-19 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Parkin-phosphoubiquitin complex reveals cryptic ubiquitin-binding site required for RBR ligase activity. Nat. Struct. Mol. Biol., 24, 2017
5X3N	Crystal structure of DiUb-K6 Descriptor: PHOSPHATE ION, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-12 Method: X-RAY DIFFRACTION (1.649 Å) Cite: Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution. To Be Published
5X3M	crystal structure of p-Ub-S65-NH2 Descriptor: D-ubiquitin, Polyubiquitin-B Authors: Man, P, Shuai, G, Qian, Q, Lei, L. Deposit date: 2017-02-06 Release date: 2017-04-05 Last modified: 2022-02-09 Method: X-RAY DIFFRACTION (1.818 Å) Cite: Structure of p-Ub-S65-NH2 at 1.82 Angstroms resolution To Be Published

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