Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3QWU
DownloadVisualize
BU of 3qwu by Molmil
Putative ATP-dependent DNA ligase from Aquifex aeolicus.
Descriptor: ADENOSINE, CALCIUM ION, DNA ligase, ...
Authors:Osipiuk, J, Quartey, P, Collart, F, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2011-02-28
Release date:2011-03-16
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Putative ATP-dependent DNA ligase from Aquifex aeolicus.
To be Published
1Z3F
DownloadVisualize
BU of 1z3f by Molmil
Structure of ellipticine in complex with a 6-bp DNA
Descriptor: 5'-D(*CP*GP*AP*TP*CP*G)-3', COBALT (II) ION, ELLIPTICINE
Authors:Canals, A, Purciolas, M, Aymami, J, Coll, M.
Deposit date:2005-03-12
Release date:2005-07-19
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:The anticancer agent ellipticine unwinds DNA by intercalative binding in an orientation parallel to base pairs.
Acta Crystallogr.,Sect.D, 61, 2005
5CFP
DownloadVisualize
BU of 5cfp by Molmil
Crystal structure of anemone STING (Nematostella vectensis) 'humanized' F276K in complex with 3', 3' c-di-GMP, c[G(3', 5')pG(3', 5')p]'
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Stimulator of Interferon Genes
Authors:Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
Deposit date:2015-07-08
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.066 Å)
Cite:Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFO
DownloadVisualize
BU of 5cfo by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in apo 'rotated' open conformation
Descriptor: Stimulator of Interferon Genes
Authors:Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
Deposit date:2015-07-08
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.102 Å)
Cite:Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFL
DownloadVisualize
BU of 5cfl by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3', 3' c-di-GMP, c[G(3', 5')pG(3', 5')p]
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CITRATE ANION, Stimulator of Interferon Genes
Authors:Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
Deposit date:2015-07-08
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.836 Å)
Cite:Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFR
DownloadVisualize
BU of 5cfr by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in apo 'unrotated' closed conformation
Descriptor: CALCIUM ION, Stimulator of Interferon Genes
Authors:Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
Deposit date:2015-07-08
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.85 Å)
Cite:Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFM
DownloadVisualize
BU of 5cfm by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3', 3' cGAMP, c[G(3', 5')pA(3', 5')p]
Descriptor: 2-amino-9-[(2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-9-(6-amino-9H-purin-9-yl)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecin-2-yl]-1,9-dihydro-6H-purin-6-one, CITRATE ANION, Stimulator of Interferon Genes
Authors:Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
Deposit date:2015-07-08
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.994 Å)
Cite:Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFQ
DownloadVisualize
BU of 5cfq by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 2',3' cGAMP, c[G(2',5')pA(3',5')p]
Descriptor: SULFATE ION, Stimulator of Interferon Genes, cGAMP
Authors:Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
Deposit date:2015-07-08
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.099 Å)
Cite:Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
5CFN
DownloadVisualize
BU of 5cfn by Molmil
Crystal structure of anemone STING (Nematostella vectensis) in complex with 3',3' c-di-AMP, c[A(3',5')pA(3',5')p]
Descriptor: (2R,3R,3aS,5R,7aR,9R,10R,10aS,12R,14aR)-2,9-bis(6-amino-9H-purin-9-yl)octahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8 ]tetraoxadiphosphacyclododecine-3,5,10,12-tetrol 5,12-dioxide, Stimulator of Interferon Genes
Authors:Kranzusch, P.J, Wilson, S.C, Lee, A.S.Y, Berger, J.M, Doudna, J.A, Vance, R.E.
Deposit date:2015-07-08
Release date:2015-08-26
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.95 Å)
Cite:Ancient Origin of cGAS-STING Reveals Mechanism of Universal 2',3' cGAMP Signaling.
Mol.Cell, 59, 2015
3RD2
DownloadVisualize
BU of 3rd2 by Molmil
NIP45 SUMO-like Domain 2
Descriptor: NFATC2-interacting protein
Authors:Perry, J.J.P, Arvai, A.S, Tainer, J.A.
Deposit date:2011-03-31
Release date:2011-04-27
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:DNA repair and global sumoylation are regulated by distinct Ubc9 noncovalent complexes.
Mol.Cell.Biol., 31, 2011
4C9D
DownloadVisualize
BU of 4c9d by Molmil
Cas6 (TTHB231) product complex
Descriptor: CAS6B, R3 REPEAT RNA CLEAVAGE PRODUCT
Authors:Jinek, M, Niewoehner, O, Doudna, J.A.
Deposit date:2013-10-02
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (3 Å)
Cite:Evolution of CRISPR RNA recognition and processing by Cas6 endonucleases.
Nucleic Acids Res., 42, 2014
4C8Z
DownloadVisualize
BU of 4c8z by Molmil
Cas6 (TTHA0078) product complex
Descriptor: CAS6A, POTASSIUM ION, R1 REPEAT RNA CLEAVAGE PRODUCT, ...
Authors:Jinek, M, Niewoehner, O, Doudna, J.A.
Deposit date:2013-10-02
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.503 Å)
Cite:Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases.
Nucleic Acids Res., 42, 2014
4C97
DownloadVisualize
BU of 4c97 by Molmil
Cas6 (TTHA0078) H37A mutant
Descriptor: CAS6A, SULFATE ION
Authors:Jinek, M, Niewoehner, O, Doudna, J.A.
Deposit date:2013-10-02
Release date:2013-11-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases.
Nucleic Acids Res., 42, 2014
4C8Y
DownloadVisualize
BU of 4c8y by Molmil
Cas6 (TTHA0078) substrate mimic complex
Descriptor: CAS6A, R1 REPEAT RNA SUBSTRATE MIMIC, SULFATE ION
Authors:Jinek, M, Niewoehner, O, Doudna, J.A.
Deposit date:2013-10-02
Release date:2013-11-06
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases.
Nucleic Acids Res., 42, 2014
4C98
DownloadVisualize
BU of 4c98 by Molmil
Thermus thermophilus Cas6 (TTHB231)
Descriptor: CAS6B, ZINC ION
Authors:Jinek, M, Niewoehner, O, Doudna, J.A.
Deposit date:2013-10-02
Release date:2013-11-06
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.001 Å)
Cite:Evolution of Crispr RNA Recognition and Processing by Cas6 Endonucleases.
Nucleic Acids Res., 42, 2014
1X2U
DownloadVisualize
BU of 1x2u by Molmil
NMR solution structures of a DNA dodecamer containing a tandem GT mismatches using NOE and residual dipolar couplings
Descriptor: 5'-D(*GP*AP*CP*TP*GP*TP*AP*CP*AP*GP*TP*C)-3'
Authors:Alvarez-Salgado, F, Desvaux, H, Boulard, Y.
Deposit date:2005-04-26
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR assessment of the global shape of a non-labelled DNA dodecamer containing a tandem of G--T mismatches
Magn.Reson.Chem., 44, 2006
1X2X
DownloadVisualize
BU of 1x2x by Molmil
NMR solution structures of a DNA dodecamer containing a tandem GT mismatches using NOE and residual dipolar couplings
Descriptor: 5'-D(*GP*AP*CP*TP*GP*TP*GP*CP*AP*GP*TP*C)-3'
Authors:Alvarez-Salgado, F, Desvaux, H, Boulard, Y.
Deposit date:2005-04-26
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR assessment of the global shape of a non-labelled DNA dodecamer containing a tandem of G--T mismatches
Magn.Reson.Chem., 44, 2006
1X2Y
DownloadVisualize
BU of 1x2y by Molmil
NMR Solution structures of a DNA dodecamer containing a tandem GT mismatches using NOE and residual dipolar couplings
Descriptor: 5'-D(*GP*AP*CP*TP*GP*TP*GP*CP*AP*GP*TP*C)-3'
Authors:Alvarez-Salgado, F, Desvaux, H, Boulard, Y.
Deposit date:2005-04-26
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR assessment of the global shape of a non-labelled DNA dodecamer containing a tandem of G--T mismatches
Magn.Reson.Chem., 44, 2006
1X30
DownloadVisualize
BU of 1x30 by Molmil
NMR Solution structures of a DNA dodecamer containing a tandem GT mismatches using NOE and residual dipolar couplings
Descriptor: 5'-D(*GP*AP*CP*TP*GP*TP*GP*CP*AP*GP*TP*C)-3'
Authors:Alvarez-Salgado, F, Desvaux, H, Boulard, Y.
Deposit date:2005-04-26
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR assessment of the global shape of a non-labelled DNA dodecamer containing a tandem of G--T mismatches
Magn.Reson.Chem., 44, 2006
1X2S
DownloadVisualize
BU of 1x2s by Molmil
NMR solution structures of a DNA dodecamer containing a tandem GT mismatches using NOE and residual dipolar couplings
Descriptor: 5'-D(*GP*AP*CP*TP*GP*TP*AP*CP*AP*GP*TP*C)-3'
Authors:Alvarez-Salgado, F, Desvaux, H, Boulard, Y.
Deposit date:2005-04-26
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR assessment of the global shape of a non-labelled DNA dodecamer containing a tandem of G--T mismatches
Magn.Reson.Chem., 44, 2006
1X2Z
DownloadVisualize
BU of 1x2z by Molmil
NMR solution structures of a DNA dodecamer containing a tandem GT mismatches using NOE and residual dipolar couplings
Descriptor: 5'-D(*GP*AP*CP*TP*GP*TP*GP*CP*AP*GP*TP*C)-3'
Authors:Alvarez-Salgado, F, Desvaux, H, Boulard, Y.
Deposit date:2005-04-26
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR assessment of the global shape of a non-labelled DNA dodecamer containing a tandem of G--T mismatches
Magn.Reson.Chem., 44, 2006
1X2O
DownloadVisualize
BU of 1x2o by Molmil
NMR solution structures of a DNA dodecamer containing a tandem GT mismatches using NOE and residual dipolar couplings
Descriptor: 5'-D(*GP*AP*CP*TP*GP*TP*AP*CP*AP*GP*TP*C)-3'
Authors:Alvarez-Salgado, F, Desvaux, H, Boulard, Y.
Deposit date:2005-04-26
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR assessment of the global shape of a non-labelled DNA dodecamer containing a tandem of G--T mismatches
Magn.Reson.Chem., 44, 2006
1X2V
DownloadVisualize
BU of 1x2v by Molmil
NMR solution structures of a DNA dodecamer containing a tandem GT mismatches using NOE and residual dipolar couplings
Descriptor: 5'-D(*GP*AP*CP*TP*GP*TP*AP*CP*AP*GP*TP*C)-3'
Authors:Alvarez-Salgado, F, Desvaux, H, Boulard, Y.
Deposit date:2005-04-26
Release date:2006-08-01
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:NMR assessment of the global shape of a non-labelled DNA dodecamer containing a tandem of G--T mismatches
Magn.Reson.Chem., 44, 2006
1Y9H
DownloadVisualize
BU of 1y9h by Molmil
Methylation of cytosine at C5 in a CpG sequence context causes a conformational switch of a benzo[a]pyrene diol epoxide-N2-guanine adduct in DNA from a minor groove alignment to intercalation with base displacement
Descriptor: 1,2,3-TRIHYDROXY-1,2,3,4-TETRAHYDROBENZO[A]PYRENE, 5'-D(*CP*CP*AP*TP*(5CM)P*(BPG)P*CP*TP*AP*CP*C)-3', 5'-D(*GP*GP*TP*AP*GP*CP*GP*AP*TP*GP*G)-3'
Authors:Zhang, N, Lin, C, Huang, X, Kolbanovskiy, A, Hingerty, B.E, Amin, S, Broyde, S, Geacintov, N.E, Patel, D.J.
Deposit date:2004-12-15
Release date:2005-03-22
Last modified:2024-04-24
Method:SOLUTION NMR
Cite:Methylation of cytosine at C5 in a CpG sequence context causes a conformational switch of a benzo[a]pyrene diol epoxide-N2-guanine adduct in DNA from a minor groove alignment to intercalation with base displacement.
J.Mol.Biol., 346, 2005
1X51
DownloadVisualize
BU of 1x51 by Molmil
Solution structure of the NUDIX domain from human A/G-specific adenine DNA glycosylase alpha-3 splice isoform
Descriptor: A/G-specific adenine DNA glycosylase
Authors:Tomizawa, T, Kigawa, T, Koshiba, S, Inoue, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-05-15
Release date:2005-11-15
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Solution structure of the NUDIX domain from human A/G-specific adenine DNA glycosylase alpha-3 splice isoform
To be Published

224572

건을2024-09-04부터공개중

PDB statisticsPDBj update infoContact PDBjnumon