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7BFL
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BU of 7bfl by Molmil
X-ray structure of SS-RNase-2 des116-120
Descriptor: Angiogenin-1
Authors:Sica, F, Russo Krauss, I, Troisi, R.
Deposit date:2021-01-04
Release date:2021-04-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.88 Å)
Cite:The structural features of an ancient ribonuclease from Salmo salar reveal an intriguing case of auto-inhibition.
Int.J.Biol.Macromol., 182, 2021
7BFK
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BU of 7bfk by Molmil
X-ray structure of SS-RNase-2
Descriptor: Angiogenin-1
Authors:Sica, F, Russo Krauss, I, Troisi, R.
Deposit date:2021-01-04
Release date:2021-04-28
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.89 Å)
Cite:The structural features of an ancient ribonuclease from Salmo salar reveal an intriguing case of auto-inhibition.
Int.J.Biol.Macromol., 182, 2021
1ZH5
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BU of 1zh5 by Molmil
Structural basis for recognition of UUUOH 3'-terminii of nascent RNA pol III transcripts by La autoantigen
Descriptor: 5'-R(*UP*GP*CP*UP*GP*UP*UP*UP*U)-3', Lupus La protein, SULFATE ION
Authors:Teplova, M, Yuan, Y.R, Ilin, S, Malinina, L, Phan, A.T, Teplov, A, Patel, D.J.
Deposit date:2005-04-22
Release date:2006-01-17
Last modified:2011-07-13
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural Basis for Recognition and Sequestration of UUU(OH) 3' Temini of Nascent RNA Polymerase III Transcripts by La, a Rheumatic Disease Autoantigen.
Mol.Cell, 21, 2006
5KPY
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BU of 5kpy by Molmil
Structure of a 5-hydroxytryptophan aptamer
Descriptor: 5-hydroxy-L-tryptophan, 5-hydroxytryptophan RNA aptamer, IRIDIUM HEXAMMINE ION, ...
Authors:Batey, R.T, Porter, E, Merck, M.
Deposit date:2016-07-05
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2 Å)
Cite:Recurrent RNA motifs as scaffolds for genetically encodable small-molecule biosensors.
Nat. Chem. Biol., 13, 2017
3C3Z
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BU of 3c3z by Molmil
Crystal structure of HIV-1 subtype F DIS extended duplex RNA bound to ribostamycin
Descriptor: HIV-1 subtype F genomic RNA, RIBOSTAMYCIN
Authors:Freisz, S, Lang, K, Micura, R, Dumas, P, Ennifar, E.
Deposit date:2008-01-29
Release date:2008-05-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Binding of aminoglycoside antibiotics to the duplex form of the HIV-1 genomic RNA dimerization initiation site.
Angew.Chem.Int.Ed.Engl., 47, 2008
4JRD
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BU of 4jrd by Molmil
Crystal structure of the parallel double-stranded helix of poly(A) RNA
Descriptor: AMMONIUM ION, RNA (5'-R(*AP*AP*AP*AP*AP*AP*AP*AP*AP*AP*A)-3')
Authors:Safaee, N, Noronha, A.M, Kozlov, G, Rodionov, D, Wilds, C.J, Sheldrick, G.M, Gehring, K.
Deposit date:2013-03-21
Release date:2013-06-05
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (1 Å)
Cite:Structure of the parallel duplex of poly(A) RNA: evaluation of a 50 year-old prediction.
Angew.Chem.Int.Ed.Engl., 52, 2013
2JTP
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BU of 2jtp by Molmil
Solution Structure of the Frameshift-Inducing RNA Stem-Loop in SIV
Descriptor: SIV17-50 RNA (34-MER)
Authors:Marcheschi, R.J, Staple, D.W, Butcher, S.E.
Deposit date:2007-08-04
Release date:2007-10-02
Last modified:2024-05-29
Method:SOLUTION NMR
Cite:Programmed Ribosomal Frameshifting in SIV Is Induced by a Highly Structured RNA Stem-Loop
J.Mol.Biol., 373, 2007
5DOT
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BU of 5dot by Molmil
Crystal Structure of Human Carbamoyl phosphate synthetase I (CPS1), apo form
Descriptor: 1,2-ETHANEDIOL, Carbamoyl-phosphate synthase [ammonia], mitochondrial, ...
Authors:Polo, L.M, de Cima, S, Fita, I, Rubio, V.
Deposit date:2015-09-11
Release date:2015-12-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Structure of human carbamoyl phosphate synthetase: deciphering the on/off switch of human ureagenesis.
Sci Rep, 5, 2015
1ARO
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BU of 1aro by Molmil
T7 RNA POLYMERASE COMPLEXED WITH T7 LYSOZYME
Descriptor: MERCURY (II) ION, T7 LYSOZYME, T7 RNA POLYMERASE
Authors:Steitz, T, Jeruzalmi, D.
Deposit date:1997-08-08
Release date:1998-10-21
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Structure of T7 RNA polymerase complexed to the transcriptional inhibitor T7 lysozyme.
EMBO J., 17, 1998
2E1B
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BU of 2e1b by Molmil
Crystal structure of the AlaX-M trans-editing enzyme from Pyrococcus horikoshii
Descriptor: 216aa long hypothetical alanyl-tRNA synthetase, ZINC ION
Authors:Fukunaga, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2006-10-20
Release date:2007-03-06
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structure of the AlaX-M trans-editing enzyme from Pyrococcus horikoshii
ACTA CRYSTALLOGR.,SECT.D, 63, 2007
4O2D
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BU of 4o2d by Molmil
Crystal structure of aspartyl-tRNA synthetase from Mycobacterium smegmatis with bound aspartic acid
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, ASPARTIC ACID, Aspartate--tRNA ligase
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2013-12-17
Release date:2014-01-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Increasing the structural coverage of tuberculosis drug targets.
Tuberculosis (Edinb), 95, 2015
1WW1
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BU of 1ww1 by Molmil
Crystal structure of tRNase Z from Thermotoga maritima
Descriptor: ZINC ION, tRNase Z
Authors:Ishii, R, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2004-12-30
Release date:2005-02-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Crystal Structure of the tRNA 3' Processing Endoribonuclease tRNase Z from Thermotoga maritima
J.Biol.Chem., 280, 2005
7KUM
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BU of 7kum by Molmil
LNA modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: 5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(LCG)-3', DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2020-11-25
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.714 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
7KUP
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BU of 7kup by Molmil
2'-OMe modification at 3' end of RNA primer complex with guanosine dinucleotide ligand G(5')ppp(5')G
Descriptor: 5'-R((LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*CP*(OMG))-3', DIGUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION
Authors:Fang, Z, Giurgiu, C, Szostak, J.W.
Deposit date:2020-11-25
Release date:2021-09-08
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.44 Å)
Cite:Structure-Activity Relationships in Nonenzymatic Template-Directed RNA Synthesis.
Angew.Chem.Int.Ed.Engl., 60, 2021
8D5K
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BU of 8d5k by Molmil
The complex of Pre-mRNA-Processing Factor 19 (Prpf19) peptide KYLQVASHV Presented by H2-Kd
Descriptor: Beta-2-microglobulin, H-2 class I histocompatibility antigen, K-D alpha chain, ...
Authors:Custodio, J.M.F, Baker, B.M.
Deposit date:2022-06-05
Release date:2022-07-06
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.066 Å)
Cite:Structural and physical features that distinguish tumor-controlling from inactive cancer neoepitopes.
Proc.Natl.Acad.Sci.USA, 120, 2023
1C8M
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BU of 1c8m by Molmil
REFINED CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS 16 COMPLEXED WITH VP63843 (PLECONARIL), AN ANTI-PICORNAVIRAL DRUG CURRENTLY IN CLINICAL TRIALS
Descriptor: 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE, HUMAN RHINOVIRUS 16 COAT PROTEIN, ZINC ION
Authors:Chakravarty, S, Bator, C.M, Pevear, D.C, Diana, G.D, Rossmann, M.G.
Deposit date:2000-05-26
Release date:2000-11-22
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:THE REFINED STRUCTURE OF A PICORNAVIRUS INHIBITOR CURRENTLY IN CLINICAL TRIALS, WHEN COMPLEXED WITH HUMAN RHINOVIRUS 16
to be published
2GHQ
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BU of 2ghq by Molmil
CTD-specific phosphatase Scp1 in complex with peptide C-terminal domain of RNA polymerase II
Descriptor: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, DNA-directed RNA polymerase II largest subunit, MAGNESIUM ION
Authors:Zhang, Y, Noel, J.P.
Deposit date:2006-03-27
Release date:2006-12-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Determinants for dephosphorylation of the RNA polymerase II C-terminal domain by Scp1.
Mol.Cell, 24, 2006
2GHT
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BU of 2ght by Molmil
CTD-specific phosphatase Scp1 in complex with peptide from C-terminal domain of RNA polymerase II
Descriptor: Carboxy-terminal domain RNA polymerase II polypeptide A small phosphatase 1, DNA-directed RNA polymerase II largest subunit, MAGNESIUM ION
Authors:Zhang, Y, Noel, J.P.
Deposit date:2006-03-27
Release date:2006-12-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Determinants for dephosphorylation of the RNA polymerase II C-terminal domain by Scp1.
Mol.Cell, 24, 2006
5DOU
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BU of 5dou by Molmil
Crystal Structure of Human Carbamoyl phosphate synthetase I (CPS1), ligand-bound form
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5'-DIPHOSPHATE, CHLORIDE ION, ...
Authors:de Cima, S, Polo, L.M, Fita, I, Rubio, V.
Deposit date:2015-09-11
Release date:2015-12-09
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structure of human carbamoyl phosphate synthetase: deciphering the on/off switch of human ureagenesis.
Sci Rep, 5, 2015
6AGG
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BU of 6agg by Molmil
Crystal structure of agmatine-AMPPCP-Mg complexed TiaS (tRNAIle2 agmatidine synthetase)
Descriptor: ACETATE ION, AGMATINE, AMMONIUM ION, ...
Authors:Dong, J.S, Gong, W.M.
Deposit date:2018-08-11
Release date:2018-09-05
Last modified:2018-10-24
Method:X-RAY DIFFRACTION (2.706 Å)
Cite:Structure of tRNA-Modifying Enzyme TiaS and Motions of Its Substrate Binding Zinc Ribbon.
J. Mol. Biol., 430, 2018
4LJ0
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BU of 4lj0 by Molmil
Nab2 Zn fingers complexed with polyadenosine
Descriptor: ACETATE ION, MAGNESIUM ION, Nab2, ...
Authors:Stewart, M, Kuhlmann, S.I, Valkov, E.
Deposit date:2013-07-04
Release date:2013-10-09
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.15 Å)
Cite:Structural basis for the molecular recognition of polyadenosine RNA by Nab2 Zn fingers.
Nucleic Acids Res., 42, 2014
6VTE
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BU of 6vte by Molmil
Naegleria gruberi RNA Ligase K170M mutant with AMP and Mn
Descriptor: ADENOSINE MONOPHOSPHATE, MANGANESE (II) ION, RNA ligase
Authors:Unciuleac, M.C, Goldgur, Y, Shuman, S.
Deposit date:2020-02-12
Release date:2020-04-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
1Z3C
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BU of 1z3c by Molmil
Encephalitozooan cuniculi mRNA Cap (Guanine-N7) Methyltransferasein complexed with AzoAdoMet
Descriptor: S-5'-AZAMETHIONINE-5'-DEOXYADENOSINE, mRNA CAPPING ENZYME
Authors:Hausmann, S, Zhang, S, Fabrega, C, Schneller, S.W, Lima, C.D, Shuman, S.
Deposit date:2005-03-11
Release date:2005-03-22
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Encephalitozoon cuniculi mRNA cap (guanine N-7) methyltransferase: methyl acceptor specificity, inhibition BY S-adenosylmethionine analogs, and structure-guided mutational analysis.
J.Biol.Chem., 280, 2005
6VT6
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BU of 6vt6 by Molmil
Naegleria gruberi RNA ligase K170A mutant with ATP and Mn
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, RNA Ligase
Authors:Unciuleac, M.C, Goldgur, Y, Shuman, S.
Deposit date:2020-02-12
Release date:2020-04-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (1.969 Å)
Cite:Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020
6VT9
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BU of 6vt9 by Molmil
Naegleria gruberi RNA ligase E227A mutant with ATP and Mn
Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MANGANESE (II) ION, RNA ligase
Authors:Unciuleac, M.C, Goldgur, Y, Shuman, S.
Deposit date:2020-02-12
Release date:2020-04-08
Last modified:2023-10-11
Method:X-RAY DIFFRACTION (2.49 Å)
Cite:Caveat mutator: alanine substitutions for conserved amino acids in RNA ligase elicit unexpected rearrangements of the active site for lysine adenylylation.
Nucleic Acids Res., 48, 2020

223790

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