1C8M

REFINED CRYSTAL STRUCTURE OF HUMAN RHINOVIRUS 16 COMPLEXED WITH VP63843 (PLECONARIL), AN ANTI-PICORNAVIRAL DRUG CURRENTLY IN CLINICAL TRIALS

Summary for 1C8M

Related1AYN 1AYM 1QJU 1QJX 1QJY
DescriptorHUMAN RHINOVIRUS 16 COAT PROTEIN, ZINC ION, 3-{3,5-DIMETHYL-4-[3-(3-METHYL-ISOXAZOL-5-YL)-PROPOXY]-PHENYL}-5-TRIFLUOROMETHYL-[1,2,4]OXADIAZOLE, ... (7 entities in total)
Functional Keywordsrhinovirus coat protein, human rhinovirus 16, antiviral compound, drug, win compound, icosahedral virus, virus
Biological sourceHuman rhinovirus 16
Cellular locationCapsid protein VP0: Virion . Capsid protein VP4: Virion . Capsid protein VP2: Virion . Capsid protein VP3: Virion . Capsid protein VP1: Virion . Protein 2B: Host cytoplasmic vesicle membrane ; Peripheral membrane protein ; Cytoplasmic side . Protein 2C: Host cytoplasmic vesicle membrane ; Peripheral membrane protein ; Cytoplasmic side . Protein 3A: Host cytoplasmic vesicle membrane ; Peripheral membrane protein ; Cytoplasmic side . Protein 3AB: Host cytoplasmic vesicle membrane ; Peripheral membrane protein ; Cytoplasmic side . Viral protein genome-linked: Virion . Protease 3C: Host cytoplasm . Protein 3CD: Host cytoplasmic vesicle membrane ; Peripheral membrane protein ; Cytoplasmic side . RNA-directed RNA polymerase: Host cytoplasmic vesicle membrane ; Peripheral membrane protein ; Cytoplasmic side  Q82122 Q82122 Q82122 Q82122
Total number of polymer chains4
Total molecular weight95626.94
Authors
Chakravarty, S.,Bator, C.M.,Pevear, D.C.,Diana, G.D.,Rossmann, M.G. (deposition date: 2000-05-26, release date: 2000-11-22, Last modification date: 2017-10-04)
Primary citation
CHAKRAVARTY, S.,BATOR, C.M.,PEVEAR, D.C.,DIANA, G.D.,ROSSMANN, M.G.
THE REFINED STRUCTURE OF A PICORNAVIRUS INHIBITOR CURRENTLY IN CLINICAL TRIALS, WHEN COMPLEXED WITH HUMAN RHINOVIRUS 16
to be published,
Experimental method
X-RAY DIFFRACTION (2.8 Å)
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Structure validation

ClashscoreRamachandran outliersSidechain outliers60.5%4.7%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution