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3WFA
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BU of 3wfa by Molmil
Catalytic role of the calcium ion in GH97 inverting glycoside hydrolase
Descriptor: Alpha-glucosidase, SODIUM ION, {[-(BIS-CARBOXYMETHYL-AMINO)-ETHYL]-CARBOXYMETHYL-AMINO}-ACETIC ACID
Authors:Okuyama, M, Yoshida, T, Hondoh, H, Mori, H, Yao, M, Kimura, A.
Deposit date:2013-07-18
Release date:2014-07-16
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2 Å)
Cite:Catalytic role of the calcium ion in GH97 inverting glycoside hydrolase
To be Published
3WH6
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BU of 3wh6 by Molmil
Crystal structure of GH1 beta-glucosidase Td2F2 glucose complex
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, SODIUM ION, alpha-D-glucopyranose, ...
Authors:Jo, T, Fushinobu, S, Uchiyama, T, Yaoi, K.
Deposit date:2013-08-21
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic beta-glucosidase Td2F2.
Febs J., 283, 2016
3WRN
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BU of 3wrn by Molmil
Minute virus of mice non-structural protein-1N-terminal nuclease domain reveals a unique Zn2+ coordination in the active site pocket and shows a novel mode of DNA recognition at the origin of replication
Descriptor: Non-capsid protein NS-1, SODIUM ION, ZINC ION
Authors:Tewary, S.K, Zhao, H, Tang, L.
Deposit date:2014-02-27
Release date:2015-01-21
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.52 Å)
Cite:Structures of minute virus of mice replication initiator protein N-terminal domain: Insights into DNA nicking and origin binding.
Virology, 476C, 2014
3WV1
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BU of 3wv1 by Molmil
Crystal structure of the catalytic domain of MMP-13 complexed with 4-(2-((6-fluoro-2-((3-methoxybenzyl)carbamoyl)-4-oxo-3,4-dihydroquinazolin-5-yl)oxy)ethyl)benzoic acid
Descriptor: 4-[2-({6-fluoro-2-[(3-methoxybenzyl)carbamoyl]-4-oxo-3,4-dihydroquinazolin-5-yl}oxy)ethyl]benzoic acid, CALCIUM ION, Collagenase 3, ...
Authors:Oki, H, Tanaka, Y.
Deposit date:2014-05-12
Release date:2015-05-20
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.98 Å)
Cite:Discovery of novel, highly potent, and selective quinazoline-2-carboxamide-based matrix metalloproteinase (MMP)-13 inhibitors without a zinc binding group using a structure-based design approach
J.Med.Chem., 57, 2014
3W5A
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BU of 3w5a by Molmil
Crystal structure of the calcium pump and sarcolipin from rabbit fast twitch skeletal muscle in the E1.Mg2+ state
Descriptor: 2',3'-O-[(1r)-2,4,6-trinitrocyclohexa-2,5-diene-1,1-diyl]adenosine 5'-(dihydrogen phosphate), MAGNESIUM ION, PHOSPHATIDYLETHANOLAMINE, ...
Authors:Toyoshima, C, Iwasawa, S, Ogawa, H, Hirata, A, Tsueda, J, Inesi, G.
Deposit date:2013-01-27
Release date:2013-03-06
Last modified:2013-03-27
Method:X-RAY DIFFRACTION (3.01 Å)
Cite:Crystal structures of the calcium pump and sarcolipin in the Mg2+-bound E1 state.
Nature, 495, 2013
4B2H
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BU of 4b2h by Molmil
COMPLEXES OF DODECIN WITH FLAVIN AND FLAVIN-LIKE LIGANDS
Descriptor: 3-[7,8-dimethyl-2,4-bis(oxidanylidene)benzo[g]pteridin-10-yl]propylcarbamic acid, CHLORIDE ION, DODECIN, ...
Authors:Yu, Y, Heidel, B, Parapugna, T.L, Wenderhold-Reeb, S, Song, B, Schoenherr, H, Grininger, M, Noell, G.
Deposit date:2012-07-16
Release date:2013-05-29
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Flavoprotein Dodecin as a Redox Probe for Electron Transfer Through DNA.
Angew.Chem.Int.Ed.Engl., 52, 2013
4B30
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BU of 4b30 by Molmil
Structure of the mutant V44A of the fluorescent protein KillerRed
Descriptor: CHLORIDE ION, GLYCEROL, KILLERRED, ...
Authors:Carpentier, P, de Rosny, E.
Deposit date:2012-07-19
Release date:2013-01-16
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Gfp-Like Phototransformation Mechanisms in the Cytotoxic Fluorescent Protein Killerred Unraveled by Structural and Spectroscopic Investigations.
J.Am.Chem.Soc., 134, 2012
3WNK
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BU of 3wnk by Molmil
Crystal Structure of Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase
Descriptor: ACETATE ION, CADMIUM ION, CALCIUM ION, ...
Authors:Suzuki, N, Fujimoto, Z, Kim, Y.M, Momma, M, Kishine, N, Suzuki, R, Kobayashi, M, Kimura, A, Funane, K.
Deposit date:2013-12-10
Release date:2014-02-05
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structural elucidation of the cyclization mechanism of alpha-1,6-glucan by Bacillus circulans T-3040 cycloisomaltooligosaccharide glucanotransferase.
J.Biol.Chem., 289, 2014
3WH7
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BU of 3wh7 by Molmil
Crystal structure of GH1 beta-glucosidase Td2F2 L-fucose complex
Descriptor: 2-[N-CYCLOHEXYLAMINO]ETHANE SULFONIC ACID, SODIUM ION, beta-D-fucopyranose, ...
Authors:Jo, T, Fushinobu, S, Uchiyama, T, Yaoi, K.
Deposit date:2013-08-21
Release date:2014-09-03
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:Crystal structure and identification of a key amino acid for glucose tolerance, substrate specificity, and transglycosylation activity of metagenomic beta-glucosidase Td2F2.
Febs J., 283, 2016
4BAF
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BU of 4baf by Molmil
Hen egg-white lysozyme structure in complex with the europium tris- hydroxyethyltriazoledipicolinate complex at 1.51 A resolution.
Descriptor: 4-(4-(2-hydroxyethyl)-1H-1,2,3-triazol-1-yl)pyridine-2,6-dicarboxylic acid, ACETATE ION, CHLORIDE ION, ...
Authors:Talon, R, Kahn, R, Gautier, A, Nauton, L, Girard, E.
Deposit date:2012-09-14
Release date:2012-11-14
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.507 Å)
Cite:Clicked Europium Dipicolinate Complexes for Protein X-Ray Structure Determination.
Chem.Commun.(Camb.), 48, 2012
4BAP
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BU of 4bap by Molmil
Hen egg-white lysozyme structure in complex with the europium tris- hydroxyethylcholinetriazoledipicolinate complex at 1.21 A resolution.
Descriptor: ACETATE ION, CHLORIDE ION, EUROPIUM (III) ION, ...
Authors:Talon, R, Kahn, R, Gautier, A, Nauton, L, Girard, E.
Deposit date:2012-09-14
Release date:2012-11-14
Last modified:2019-03-06
Method:X-RAY DIFFRACTION (1.207 Å)
Cite:Clicked Europium Dipicolinate Complexes for Protein X-Ray Structure Determination.
Chem.Commun.(Camb.), 48, 2012
3DIM
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BU of 3dim by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Cs+ Soak
Descriptor: CESIUM ION, ISOPROPYL ALCOHOL, LYSINE, ...
Authors:Serganov, A.A.
Deposit date:2008-06-20
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
3M3U
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BU of 3m3u by Molmil
Effect of temperature on tryptophan fluorescence in lysozyme crystals
Descriptor: CHLORIDE ION, Lysozyme C, SODIUM ION
Authors:Varshney, N.K, Sitaramam, V.
Deposit date:2010-03-10
Release date:2010-03-23
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Effect of temperature on tryptophan fluorescence in lysozyme crystals
TO BE PUBLISHED
3M1E
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BU of 3m1e by Molmil
Crystal Structure of BenM_DBD
Descriptor: HTH-type transcriptional regulator benM, SODIUM ION
Authors:Alanazi, A, Momany, C, Neidle, E.L.
Deposit date:2010-03-04
Release date:2011-04-27
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Crystal structure of the unbound LysR-type transcriptional regulator BenM DNA binding domain
Acta Crystallogr.,Sect.D, 2013
3DC7
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BU of 3dc7 by Molmil
Crystal structure of the protein Q88SR8 from Lactobacillus plantarum. Northeast Structural Genomics consortium target LpR109.
Descriptor: MAGNESIUM ION, Putative uncharacterized protein lp_3323, SODIUM ION, ...
Authors:Kuzin, A.P, Abashidze, M, Vorobiev, S.M, Seetharaman, J, Zhao, L, Mao, L, Ciccosanti, C, Xiao, R, Nair, R, Baran, M.C, Acton, T.B, Rost, B, Montelione, G.T, Hunt, J.F, Tong, L, Northeast Structural Genomics Consortium (NESG)
Deposit date:2008-06-03
Release date:2008-08-05
Last modified:2017-10-25
Method:X-RAY DIFFRACTION (2.12 Å)
Cite:Crystal structure of the protein Q88SR8 from Lactobacillus plantarum. Northeast Structural Genomics consortium target LpR109. (CASP Target)
To be Published
2D16
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BU of 2d16 by Molmil
Crystal Structure of PH1918 protein from Pyrococcus horikoshii OT3
Descriptor: GLYCEROL, SODIUM ION, hypothetical protein PH1918
Authors:Lokanath, N.K, Kunishima, N, RIKEN Structural Genomics/Proteomics Initiative (RSGI)
Deposit date:2005-08-14
Release date:2006-10-31
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Crystal Structure of PH1918 protein from Pyrococcus horikoshii OT3
To be Published
3M92
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BU of 3m92 by Molmil
The structure of yciN, an unchracterized protein from Shigella flexneri.
Descriptor: CHLORIDE ION, Protein yciN, SODIUM ION
Authors:Cuff, M.E, Xu, X, Cui, H, Chin, S, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2010-03-19
Release date:2010-05-19
Last modified:2017-11-08
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:The structure of yciN, an unchracterized protein from Shigella flexneri.
TO BE PUBLISHED
1MDG
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BU of 1mdg by Molmil
An Alternating Antiparallel Octaplex in an RNA Crystal Structure
Descriptor: 5'-R(*UP*(BGM)GP*AP*GP*GP*U)-3', COBALT HEXAMMINE(III), SODIUM ION
Authors:Pan, B.C, Xiong, Y, Shi, K, Sundaralingam, M.
Deposit date:2002-08-07
Release date:2003-08-12
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:An Eight-Stranded Helical Fragment in RNA Crystal Structure: Implications for Tetraplex Interaction
Structure, 11, 2003
3MOY
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BU of 3moy by Molmil
Crystal structure of probable enoyl-CoA hydratase from Mycobacterium smegmatis
Descriptor: 1,2-ETHANEDIOL, 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, GLYCEROL, ...
Authors:Seattle Structural Genomics Center for Infectious Disease (SSGCID)
Deposit date:2010-04-23
Release date:2010-05-12
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Increasing the structural coverage of tuberculosis drug targets.
Tuberculosis (Edinb), 95, 2015
2R84
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BU of 2r84 by Molmil
Crystal structure of PurP from Pyrococcus furiosus complexed with AMP and AICAR
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, ADENOSINE MONOPHOSPHATE, AMINOIMIDAZOLE 4-CARBOXAMIDE RIBONUCLEOTIDE, ...
Authors:Zhang, Y, White, R.H, Ealick, S.E.
Deposit date:2007-09-10
Release date:2007-12-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure and function of 5-formaminoimidazole-4-carboxamide ribonucleotide synthetase from Methanocaldococcus jannaschii.
Biochemistry, 47, 2008
4BY4
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BU of 4by4 by Molmil
Crystal structure of Drosophila Frq2
Descriptor: CALCIUM ION, FI18190P1, SODIUM ION
Authors:Banos-Mateos, S, Chaves-Sanjuan, A, Sanchez-Barrena, M.J.
Deposit date:2013-07-17
Release date:2014-08-13
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The Guanine-Exchange Factor Ric8A Binds to the Ca2+ Sensor Ncs-1 to Regulate Synapse Number and Neurotransmitter Release.
J.Cell.Sci., 127, 2014
4K7T
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BU of 4k7t by Molmil
Structure of the ternary complex of bacitracin, zinc, and geranyl-pyrophosphate
Descriptor: GERANYL DIPHOSPHATE, SODIUM ION, ZINC ION, ...
Authors:Economou, N.J, Loll, P.J.
Deposit date:2013-04-17
Release date:2013-08-14
Last modified:2013-10-16
Method:X-RAY DIFFRACTION (1.1 Å)
Cite:High-resolution crystal structure reveals molecular details of target recognition by bacitracin.
Proc.Natl.Acad.Sci.USA, 110, 2013
4CQH
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BU of 4cqh by Molmil
Structure of Infrared Fluorescent Protein IFP2.0
Descriptor: 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, BACTERIOPHYTOCHROME, SODIUM ION
Authors:Lafaye, C, Yu, D, Noirclerc-Savoye, M, Shu, X, Royant, A.
Deposit date:2014-02-17
Release date:2014-05-28
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.14 Å)
Cite:An Improved Monomeric Infrared Fluorescent Protein for Neuronal and Tumour Brain Imaging.
Nat.Commun., 5, 2014
4CFY
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BU of 4cfy by Molmil
SAVINASE CRYSTAL STRUCTURES FOR COMBINED SINGLE CRYSTAL DIFFRACTION AND POWDER DIFFRACTION ANALYSIS
Descriptor: CALCIUM ION, SODIUM ION, SUBTILISIN SAVINASE
Authors:Frankaer, C.G, Moroz, O.V, Turkenburg, J.P, Aspmo, S.I, Thymark, M, Friis, E.P, Stahla, K, Nielsen, J.E, Wilson, K.S, Harris, P.
Deposit date:2013-11-19
Release date:2014-04-09
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.17 Å)
Cite:Analysis of an Industrial Production Suspension of Bacillus Lentus Subtilisin Crystals by Powder Diffraction: A Powerful Quality-Control Tool.
Acta Crystallogr.,Sect.D, 70, 2014
4KS5
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BU of 4ks5 by Molmil
Influenza neuraminidase in complex with antiviral compound (3S,4R,5R)-4-(acetylamino)-3-[4-(2-hydroxypropan-2-yl)-1H-1,2,3-triazol-1-yl]-5-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid
Descriptor: (3S,4R,5R)-4-(acetylamino)-3-[4-(2-hydroxypropan-2-yl)-1H-1,2,3-triazol-1-yl]-5-(pentan-3-yloxy)cyclohex-1-ene-1-carboxylic acid, CALCIUM ION, Neuraminidase
Authors:Kerry, P.S, Russell, R.J.M.
Deposit date:2013-05-17
Release date:2013-10-30
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.699 Å)
Cite:Structural basis for a class of nanomolar influenza A neuraminidase inhibitors.
Sci Rep, 3, 2013

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