PDB: 113 resultsInfo pagesStatus searchChemie searchBIRD

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3VA0	Crystal structure of RNase T in complex with a di-nucleotide product (GG) with one Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*G)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.201 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
7V5H	VcOrn native structure with N terminal tag Descriptor: Oligoribonuclease Authors: Zhang, J, Zhang, Q, Bartlam, M. Deposit date: 2021-08-17 Release date: 2021-12-15 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal structure of oligoribonuclease from Vibrio cholerae O1 El Tor with bound peptide. Acta Crystallogr.,Sect.F, 77, 2021
7WIK	Crystal structure of oligoribonuclease of Mycobacterium smegmatis mc2 155 Descriptor: ACETATE ION, DI(HYDROXYETHYL)ETHER, GLYCEROL, ... Authors: Badhwar, P, Taneja, B. Deposit date: 2022-01-03 Release date: 2022-12-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.87 Å) Cite: Three-dimensional structure of a mycobacterial oligoribonuclease reveals a unique C-terminal tail that stabilizes the homodimer. J.Biol.Chem., 298, 2022
3V9W	Crystal structure of RNase T in complex with a preferred ssDNA (TTA) with two Mg in the active site Descriptor: COBALT (II) ION, DNA (5'-D(*GP*CP*TP*TP*A)-3'), MAGNESIUM ION, ... Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2011-12-28 Release date: 2012-07-11 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.702 Å) Cite: How an exonuclease decides where to stop in trimming of nucleic acids: crystal structures of RNase T-product complexes Nucleic Acids Res., 40, 2012
4KB1	Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT ) Descriptor: Bulge DNA, MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2013-04-23 Release date: 2014-03-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
4KAZ	Crystal structure of RNase T in complex with a Y structured DNA Descriptor: DNA (5'-D(*TP*TP*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2013-04-23 Release date: 2014-03-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
4KB0	Crystal structure of RNase T in complex with a bluge DNA (Two nucleotide insertion CC ) Descriptor: DNA (5'-D(*GP*GP*CP*CP*CP*TP*CP*TP*TP*TP*AP*GP*GP*GP*CP*CP*CP*C)-3'), MAGNESIUM ION, Ribonuclease T Authors: Hsiao, Y.-Y, Yuan, H.S. Deposit date: 2013-04-23 Release date: 2014-03-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.004 Å) Cite: Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
5Z9X	Arabidopsis SMALL RNA DEGRADING NUCLEASE 1 in complex with an RNA substrate Descriptor: MAGNESIUM ION, RNA (5'-R(P*GP*CP*CP*CP*AP*UP*UP*AP*G)-3'), SULFATE ION, ... Authors: Chen, J, Liu, L, You, C, Gu, J, Ruan, W, Zhang, L, Gan, J, Cao, C, Huang, Y, Chen, X, Ma, J. Deposit date: 2018-02-05 Release date: 2018-06-27 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and biochemical insights into small RNA 3' end trimming by Arabidopsis SDN1. Nat Commun, 9, 2018
6A46	Structure of TREX2 in complex with a nucleotide (dCMP) Descriptor: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE, CALCIUM ION, MAGNESIUM ION, ... Authors: Hsiao, Y.Y. Deposit date: 2018-06-19 Release date: 2018-11-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2 Å) Cite: Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A4B	Structure of TREX2 in complex with a duplex DNA with 2 nucleotide 3'-overhang Descriptor: DNA (5'-D(*GP*GP*CP*CP*CP*TP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, Three prime repair exonuclease 2 Authors: Hsiao, Y.Y. Deposit date: 2018-06-19 Release date: 2018-11-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A47	Structure of TREX2 in complex with a Y structured dsDNA Descriptor: DNA (5'-D(P*CP*CP*AP*GP*GP*CP*CP*CP*TP*CP*TP*AP*GP*GP*GP*CP*CP*TP*T)-3'), MAGNESIUM ION, SODIUM ION, ... Authors: Hsiao, Y.Y. Deposit date: 2018-06-19 Release date: 2018-11-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6A4E	Two linked uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H Descriptor: Oligoribonuclease, RNA (5'-R(P*UP*UP*UP*UP*U)-3') Authors: Lee, C.W, Park, S, Lee, J.H. Deposit date: 2018-06-19 Release date: 2019-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.45 Å) Cite: Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4D	pNP-TMP bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H Descriptor: 5'-O-[(S)-hydroxy(4-nitrophenoxy)phosphoryl]thymidine, Oligoribonuclease Authors: Lee, C.W, Park, S, Lee, J.H. Deposit date: 2018-06-19 Release date: 2019-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.19 Å) Cite: Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4A	Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H Descriptor: MAGNESIUM ION, Oligoribonuclease Authors: Lee, C.W, Park, S, Lee, J.H. Deposit date: 2018-06-19 Release date: 2019-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A4F	Separated uridine bound Oligoribonuclease (ORN) from Colwellia psychrerythraea strain 34H Descriptor: MANGANESE (II) ION, Oligoribonuclease, URIDINE-5'-MONOPHOSPHATE Authors: Lee, C.W, Park, S, Lee, J.H. Deposit date: 2018-06-19 Release date: 2019-03-13 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.21 Å) Cite: Structural basis of small RNA hydrolysis by oligoribonuclease (CpsORN) from Colwellia psychrerythraea strain 34H. Sci Rep, 9, 2019
6A45	Structure of mouse TREX2 Descriptor: PHOSPHATE ION, Three prime repair exonuclease 2 Authors: Hsiao, Y.Y. Deposit date: 2018-06-19 Release date: 2018-11-07 Last modified: 2023-11-22 Method: X-RAY DIFFRACTION (1.904 Å) Cite: Structural insights into the duplex DNA processing of TREX2 Nucleic Acids Res., 46, 2018
6RCI	Crystal structure of REXO2 Descriptor: Oligoribonuclease, mitochondrial Authors: Spahr, H, Nicholls, T.J, Larsson, N.G, Gustafsson, C.M. Deposit date: 2019-04-11 Release date: 2019-10-09 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2 Å) Cite: Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria. Mol.Cell, 76, 2019
6RCN	Crystal structure of REXO2-D199A-dAdA Descriptor: DNA (5'-D(P*AP*A)-3'), MAGNESIUM ION, Oligoribonuclease, ... Authors: Spahr, H, Nicholls, T.J, Larsson, N.G, Gustafsson, C.M. Deposit date: 2019-04-11 Release date: 2019-10-09 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria. Mol.Cell, 76, 2019
6RCL	Crystal structure of REXO2-D199A-AA Descriptor: MAGNESIUM ION, Oligoribonuclease, mitochondrial, ... Authors: Spahr, H, Nicholls, T.J, Larsson, N.G, Gustafsson, C.M. Deposit date: 2019-04-11 Release date: 2019-10-09 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Dinucleotide Degradation by REXO2 Maintains Promoter Specificity in Mammalian Mitochondria. Mol.Cell, 76, 2019
6N6D	Vibrio cholerae Oligoribonuclease bound to pAG Descriptor: Oligoribonuclease, RNA (5'-R(P*AP*G)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.534 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6K	Human REXO2 bound to pAG Descriptor: MALONATE ION, RNA (5'-R(P*AP*G)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, ... Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.418 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6F	Vibrio cholerae Oligoribonuclease bound to pGC Descriptor: Oligoribonuclease, RNA (5'-R(P*GP*C)-3'), SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.735 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6J	Human REXO2 bound to pAA Descriptor: 1,2-ETHANEDIOL, GLYCEROL, MALONATE ION, ... Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.317 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6C	Vibrio cholerae Oligoribonuclease bound to pAA Descriptor: RNA (5'-R(P*AP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.619 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019
6N6E	Vibrio cholerae Oligoribonuclease bound to pGA Descriptor: RNA (5'-R(P*GP*A)-3'), RNA exonuclease 2 homolog,Small fragment nuclease, SODIUM ION Authors: Lormand, J.D, Sondermann, H. Deposit date: 2018-11-26 Release date: 2019-06-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.578 Å) Cite: A dedicated diribonucleotidase resolves a key bottleneck for the terminal step of RNA degradation. Elife, 8, 2019

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