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5J5D
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BU of 5j5d by Molmil
Crystal structure of Dihydrodipicolinate Synthase from Mycobacterium tuberculosis in complex with alpha-ketopimelic acid
Descriptor: 2-oxoheptanedioic acid, 4-hydroxy-tetrahydrodipicolinate synthase, SODIUM ION
Authors:Navratna, V, Gopal, B.
Deposit date:2016-04-02
Release date:2016-08-17
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Inhibition of Mycobacterium tuberculosis dihydrodipicolinate synthase by alpha-ketopimelic acid and its other structural analogues
Sci Rep, 6, 2016
4DPQ
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The structure of dihydrodipicolinate synthase 2 from Arabidopsis thaliana in complex with (S)-lysine
Descriptor: Dihydrodipicolinate synthase 2, chloroplastic, LYSINE, ...
Authors:Griffin, M.D.W, Billakanti, J.M, Gerrard, J.A, Dobson, R.C.J, Pearce, F.G.
Deposit date:2012-02-14
Release date:2012-07-18
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.202 Å)
Cite:Characterisation of the first enzymes committed to lysine biosynthesis in Arabidopsis thaliana
Plos One, 7, 2012
5CZJ
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BU of 5czj by Molmil
Crystal structure of HypD, a 1-pyrroline-4-hydroxy-2-carboxylate deaminase from Sinorhizobium meliloti
Descriptor: Dihydrodipicolinate synthase
Authors:Stogios, P.J, Xu, X, Savchenko, A.
Deposit date:2015-07-31
Release date:2016-02-03
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:l-Hydroxyproline and d-Proline Catabolism in Sinorhizobium meliloti.
J.Bacteriol., 198, 2016
5AFD
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BU of 5afd by Molmil
Native structure of N-acetylneuramininate lyase (sialic acid aldolase) from Aliivibrio salmonicida
Descriptor: 1,2-ETHANEDIOL, GLYCEROL, N-ACETYLNEURAMINATE LYASE
Authors:Gurung, M.K, Altermark, B, Rader, I.L.U, Helland, R, Smalas, A.O.
Deposit date:2015-01-21
Release date:2016-03-02
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.65 Å)
Cite:Features and structure of a cold active N-acetylneuraminate lyase.
Plos One, 14, 2019
5KZE
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BU of 5kze by Molmil
N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus
Descriptor: GLYCEROL, N-acetylneuraminate lyase, SULFATE ION
Authors:North, R.A, Watson, A.J.A, Pearce, F.G, Muscroft-Taylor, A.C, Friemann, R, Fairbanks, A.J, Dobson, R.C.J.
Deposit date:2016-07-25
Release date:2017-01-11
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Structure and inhibition of N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus.
FEBS Lett., 590, 2016
5KTL
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Dihydrodipicolinate synthase from the industrial and evolutionarily important cyanobacteria Anabaena variabilis.
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, MANGANESE (II) ION
Authors:Christensen, J.B, Panjikar, S, Perugini, M.
Deposit date:2016-07-11
Release date:2016-11-30
Method:X-RAY DIFFRACTION (1.92 Å)
Cite:Structure and Function of Cyanobacterial DHDPS and DHDPR.
Sci Rep, 6, 2016
4EOU
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BU of 4eou by Molmil
Crystal structure of E. coli dihydrodipicolinate synthase with pyruvate and succinic semi-aldehyde bound in active site
Descriptor: Dihydrodipicolinate synthase, GLYCEROL, POTASSIUM ION
Authors:Boughton, B.A, Dobson, R.C.J, Hutton, C.A.
Deposit date:2012-04-15
Release date:2012-04-25
Last modified:2023-12-06
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of dihydrodipicolinate synthase from Escherichia coli with bound pyruvate and succinic acid semialdehyde: Unambiguous resolution of the stereochemistry of the condensation product.
Proteins, 80, 2012
5KZD
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BU of 5kzd by Molmil
N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus with bound sialic acid alditol
Descriptor: (2~{S},4~{S},5~{R},6~{R},7~{S},8~{R})-5-acetamido-2,4,6,7,8,9-hexakis(oxidanyl)nonanoic acid, N-acetylneuraminate lyase
Authors:North, R.A, Watson, A.J.A, Pearce, F.G, Muscroft-Taylor, A.C, Friemann, R, Fairbanks, A.J, Dobson, R.C.J.
Deposit date:2016-07-25
Release date:2017-01-11
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (2.334 Å)
Cite:Structure and inhibition of N-acetylneuraminate lyase from methicillin-resistant Staphylococcus aureus.
FEBS Lett., 590, 2016
6G3Z
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Sulfolobus sulfataricus 2-keto-3-deoxygluconate (KDG) aldolase complex with D-KDPG
Descriptor: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase, 2-keto 3 deoxy 6 phospho gluconate, ISOPROPYL ALCOHOL
Authors:Crennell, S.J.
Deposit date:2018-03-26
Release date:2018-06-27
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Insights into the Substrate Specificity of Archaeal Entner-Doudoroff Aldolases: The Structures of Picrophilus torridus 2-Keto-3-deoxygluconate Aldolase and Sulfolobus solfataricus 2-Keto-3-deoxy-6-phosphogluconate Aldolase in Complex with 2-Keto-3-deoxy-6-phosphogluconate.
Biochemistry, 57, 2018
6GT8
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BU of 6gt8 by Molmil
Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y132V,T157C variant
Descriptor: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase, 3-DEOXY-D-ARABINO-HEXONIC ACID
Authors:Crennell, S.J, Danson, M.J, Royer, S.
Deposit date:2018-06-15
Release date:2019-06-26
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (3.15 Å)
Cite:Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y132V,T157C variant
To Be Published
6H2S
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BU of 6h2s by Molmil
Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/D181Q/A198L variant, pyruvate complex
Descriptor: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase, DI(HYDROXYETHYL)ETHER, GLYCEROL, ...
Authors:Crennell, S.J, Danson, M.J, Royer, S.
Deposit date:2018-07-16
Release date:2019-07-31
Last modified:2024-01-17
Method:X-RAY DIFFRACTION (2.17 Å)
Cite:Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase T157V/D181Q/A198L variant
To Be Published
5C54
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BU of 5c54 by Molmil
Crystal structure of a novel N-acetylneuraminic acid lyase from Corynebacterium glutamicum
Descriptor: Dihydrodipicolinate synthase/N-acetylneuraminate lyase, GLYCEROL
Authors:Shen, Y, Zhou, J, Xie, J.
Deposit date:2015-06-19
Release date:2016-06-22
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (1.601 Å)
Cite:Crystal structure of a novel N-acetylneuraminic acid lyase from Corynebacterium glutamicum
To Be Published
2NUY
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BU of 2nuy by Molmil
2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius in complex with pyruvate
Descriptor: 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase, MAGNESIUM ION, PYRUVIC ACID
Authors:van Eerde, A, Dijkstra, B.W.
Deposit date:2006-11-10
Release date:2007-04-10
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Biochemical and structural exploration of the catalytic capacity of Sulfolobus KDG aldolases
Biochem.J., 403, 2007
2NUX
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BU of 2nux by Molmil
2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius, native structure in p6522 at 2.5 A resolution
Descriptor: 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase, MAGNESIUM ION
Authors:van Eerde, A, Dijkstra, B.W.
Deposit date:2006-11-10
Release date:2007-04-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2.5 Å)
Cite:Biochemical and structural exploration of the catalytic capacity of Sulfolobus KDG aldolases
Biochem.J., 403, 2007
2OJP
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BU of 2ojp by Molmil
The crystal structure of a dimeric mutant of Dihydrodipicolinate synthase from E.coli- DHDPS-L197Y
Descriptor: Dihydrodipicolinate synthase, GLYCEROL
Authors:Griffin, M.D.W, Dobson, R.C.J, Antonio, L, Perugini, M.A, Jameson, G.B, Gerrard, J.A.
Deposit date:2007-01-13
Release date:2008-01-01
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Evolution of quaternary structure in a homotetrameric enzyme.
J.Mol.Biol., 380, 2008
2NUW
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BU of 2nuw by Molmil
2-keto-3-deoxygluconate aldolase from Sulfolobus acidocaldarius, native structure at 1.8 A resolution
Descriptor: 2-keto-3-deoxygluconate/2-keto-3-deoxy-6-phospho gluconate aldolase, MAGNESIUM ION
Authors:van Eerde, A, Dijkstra, B.W.
Deposit date:2006-11-10
Release date:2007-04-10
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Biochemical and structural exploration of the catalytic capacity of Sulfolobus KDG aldolases
Biochem.J., 403, 2007
5F1U
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BU of 5f1u by Molmil
biomimetic design results in a potent allosteric inhibitor of dihydrodipicolinate synthase from Campylobacter jejuni
Descriptor: (2R,5R)-2,5-diamino-2,5-bis(4-aminobutyl)hexanedioic acid, 1,2-ETHANEDIOL, 4-hydroxy-tetrahydrodipicolinate synthase, ...
Authors:Conly, C.J.T, Palmer, D.R.J, Sanders, D.A.R.
Deposit date:2015-11-30
Release date:2016-02-17
Last modified:2023-09-27
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Biomimetic Design Results in a Potent Allosteric Inhibitor of Dihydrodipicolinate Synthase from Campylobacter jejuni.
J.Am.Chem.Soc., 138, 2016
7LBD
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BU of 7lbd by Molmil
Dihydrodipicolinate synthase (DHDPS) from C.jejuni, H59K mutant with pyruvate bound in the active site in C2221 space group
Descriptor: 1,2-ETHANEDIOL, 4-hydroxy-tetrahydrodipicolinate synthase, ACETATE ION, ...
Authors:Saran, S, Yazdi, M.M, Sanders, D.A.R.
Deposit date:2021-01-07
Release date:2022-01-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Reversing the roles of a crucial hydrogen-bonding pair: a lysine-insensitive mutant of Campylobacter jejuni dihydrodipicolinate synthase, H59K, binds histidine in its allosteric site
To Be Published
7LCF
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BU of 7lcf by Molmil
Dihydrodipicolinate synthase (DHDPS) from C.jejuni, with pyruvate bound in the active site and L-lysine bound at the allosteric site in C121 space group
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, LYSINE, MAGNESIUM ION
Authors:Saran, S, Sanders, D.A.R.
Deposit date:2021-01-10
Release date:2022-01-12
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.69 Å)
Cite:B-factors: L- lysine and R, R- bisLysine allosterically inhibit Cj. DHDPS Enzyme by decreasing its protein dynamics
To Be Published
6UE0
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BU of 6ue0 by Molmil
Crystal structure of dihydrodipicolinate synthase from Klebsiella pneumoniae bound to pyruvate
Descriptor: 4-hydroxy-tetrahydrodipicolinate synthase, CHLORIDE ION, SULFATE ION
Authors:Impey, R.E, Lee, M, Hawkins, D.A, Sutton, J.M, Panjikar, S, Perugini, M.A, Soares da Costa, T.P.
Deposit date:2019-09-20
Release date:2020-02-05
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.892 Å)
Cite:Mis-annotations of a promising antibiotic target in high-priority gram-negative pathogens.
Febs Lett., 594, 2020
7M06
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BU of 7m06 by Molmil
Dihydrodipicolinate synthase (DHDPS) from C.jejuni, Y110F mutant with R,R-bislysine bound at the allosteric site at 2.7 Angstrom
Descriptor: (2R,5R)-2,5-diamino-2,5-bis(4-aminobutyl)hexanedioic acid, 1,2-ETHANEDIOL, 4-hydroxy-tetrahydrodipicolinate synthase, ...
Authors:Saran, S, Sanders, D.A.R.
Deposit date:2021-03-10
Release date:2022-03-16
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:B-FACTOR ANALYSIS SUGGEST THAT L-LYSINE AND R, R-BISLYSINE ALLOSTERICALLY INHIBIT Cj.DHDPS ENZYME BY DECREASING PROTEIN DYNAMICS
To Be Published
2A6L
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BU of 2a6l by Molmil
Dihydrodipicolinate synthase (E. coli)- mutant R138H
Descriptor: Dihydrodipicolinate synthase, POTASSIUM ION
Authors:Dobson, R.C, Devenish, S.R, Turner, L.A, Clifford, V.R, Pearce, F.G, Jameson, G.B, Gerrard, J.A.
Deposit date:2005-07-03
Release date:2005-10-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Role of Arginine 138 in the Catalysis and Regulation of Escherichia coli Dihydrodipicolinate Synthase.
Biochemistry, 44, 2005
6U01
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BU of 6u01 by Molmil
Dihydrodipicolinate synthase (DHDPS) from C.jejuni, N84D mutant with pyruvate bound in the active site
Descriptor: 1,2-ETHANEDIOL, 4-hydroxy-tetrahydrodipicolinate synthase, ACETATE ION, ...
Authors:Saran, S, Majdi Yazdi, M, Lehnert, L, Palmer, D.R.J, Sanders, D.A.R.
Deposit date:2019-08-13
Release date:2019-12-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Asparagine-84, a regulatory allosteric site residue, helps maintain the quaternary structure of Campylobacter jejuni dihydrodipicolinate synthase.
J.Struct.Biol., 209, 2020
6TZU
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BU of 6tzu by Molmil
Dihydrodipicolinate synthase (DHDPS) from C.jejuni, N84A mutant with pyruvate bound in the active site
Descriptor: 1,2-ETHANEDIOL, 4-hydroxy-tetrahydrodipicolinate synthase, ACETATE ION, ...
Authors:Saran, S, Majdi Yazdi, M, Lehnert, C, Palmer, D.R.J, Sanders, D.A.R.
Deposit date:2019-08-13
Release date:2019-12-04
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.8 Å)
Cite:Asparagine-84, a regulatory allosteric site residue, helps maintain the quaternary structure of Campylobacter jejuni dihydrodipicolinate synthase.
J.Struct.Biol., 209, 2020
2A6N
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BU of 2a6n by Molmil
Dihydrodipicolinate synthase (E. coli)- mutant R138A
Descriptor: Dihydrodipicolinate synthase, POTASSIUM ION
Authors:Dobson, R.C, Devenish, S.R, Turner, L.A, Clifford, V.R, Pearce, F.G, Jameson, G.B, Gerrard, J.A.
Deposit date:2005-07-03
Release date:2005-10-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (1.94 Å)
Cite:Role of Arginine 138 in the Catalysis and Regulation of Escherichia coli Dihydrodipicolinate Synthase.
Biochemistry, 44, 2005

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