Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

3K2P
DownloadVisualize
BU of 3k2p by Molmil
HIV-1 Reverse Transcriptase Isolated RnaseH Domain with the Inhibitor beta-thujaplicinol Bound at the Active Site
Descriptor: 2,7-dihydroxy-4-(propan-2-yl)cyclohepta-2,4,6-trien-1-one, MANGANESE (II) ION, Reverse Transcriptase
Authors:Pauly, T.A, Himmel, D.M, Maegley, K, Arnold, E.
Deposit date:2009-09-30
Release date:2010-02-09
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Structure of HIV-1 reverse transcriptase with the inhibitor beta-Thujaplicinol bound at the RNase H active site.
Structure, 17, 2009
1XHC
DownloadVisualize
BU of 1xhc by Molmil
NADH oxidase /nitrite reductase from Pyrococcus furiosus Pfu-1140779-001
Descriptor: FLAVIN-ADENINE DINUCLEOTIDE, NADH oxidase /nitrite reductase
Authors:Horanyi, P, Tempel, W, Weinberg, M.V, Liu, Z.-J, Shah, A, Chen, L, Lee, D, Sugar, F.J, Brereton, P.S, Izumi, M, Poole II, F.L, Shah, C, Jenney Jr, F.E, Arendall III, W.B, Rose, J.P, Adams, M.W.W, Richardson, J.S, Richardson, D.C, Wang, B.-C, Southeast Collaboratory for Structural Genomics (SECSG)
Deposit date:2004-09-17
Release date:2004-11-23
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:NADH oxidase /nitrite reductase from Pyrococcus furiosus Pfu-1140779-001
To be published
8BPN
DownloadVisualize
BU of 8bpn by Molmil
The structure of thiocyanate dehydrogenase mutant form with Phe 436 replaced by Gln from Thioalkalivibrio paradoxus
Descriptor: COPPER (II) ION, DI(HYDROXYETHYL)ETHER, Twin-arginine translocation signal domain-containing protein
Authors:Varfolomeeva, L.A, Solovieva, A.Y, Shipkov, N.S, Kulikova, O.G, Dergousova, N.I, Rakitina, T.V, Boyko, K.M, Tikhonova, T.V, Popov, V.O.
Deposit date:2023-01-09
Release date:2023-01-18
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.99 Å)
Cite:Probing the Role of a Conserved Phenylalanine in the Active Site of Thiocyanate Dehydrogenase
Crystals, 12, 2022
2W9L
DownloadVisualize
BU of 2w9l by Molmil
CANINE ADENOVIRUS TYPE 2 FIBRE HEAD IN COMPLEX WITH CAR DOMAIN D1 AND SIALIC ACID
Descriptor: COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR, FIBRE PROTEIN, N-acetyl-alpha-neuraminic acid-(2-3)-beta-D-galactopyranose, ...
Authors:Seiradake, E, Henaff, D, Wodrich, H, Billet, O, Perreau, M, Hippert, C, Mennechet, F, Schoehn, G, Lortat-Jacob, H, Dreja, H, Ibanes, S, Kalatzis, V, Wang, J.P, Finberg, R.W, Cusack, S, Kremer, E.J.
Deposit date:2009-01-26
Release date:2009-03-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.91 Å)
Cite:The cell adhesion molecule "CAR" and sialic acid on human erythrocytes influence adenovirus in vivo biodistribution.
PLoS Pathog., 5, 2009
6YYN
DownloadVisualize
BU of 6yyn by Molmil
Structure of Cathepsin S in complex with Compound 14
Descriptor: CITRATE ANION, Cathepsin S, SULFATE ION, ...
Authors:Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
Deposit date:2020-05-05
Release date:2021-05-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.22 Å)
Cite:Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
5UKR
DownloadVisualize
BU of 5ukr by Molmil
Structure of unliganded anti-gp120 CD4bs antibody DH522.2 Fab in complex with a gp120 core
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Chimeric B.YU2 gp120 core derived from HIV-1 Env, DH522.2 Fab fragment heavy chain, ...
Authors:Nicely, N.I.
Deposit date:2017-01-23
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.712 Å)
Cite:Initiation of HIV neutralizing B cell lineages with sequential envelope immunizations.
Nat Commun, 8, 2017
1X8R
DownloadVisualize
BU of 1x8r by Molmil
EPSPS liganded with the (S)-phosphonate analog of the tetrahedral reaction intermediate
Descriptor: 3-phosphoshikimate 1-carboxyvinyltransferase, FORMIC ACID, [3R-[3A,4A,5B(S*)]]-5-(1-CARBOXY-1-PHOSPHONOETHOXY)-4-HYDROXY-3-(PHOSPHONOOXY)-1-CYCLOHEXENE-1-CARBOXYLIC ACID
Authors:Priestman, M.A, Healy, M.L, Becker, A, Alberg, D.G, Bartlett, P.A, Schonbrunn, E.
Deposit date:2004-08-18
Release date:2005-04-19
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Interaction of phosphonate analogues of the tetrahedral reaction intermediate with 5-enolpyruvylshikimate-3-phosphate synthase in atomic detail.
Biochemistry, 44, 2005
1XRP
DownloadVisualize
BU of 1xrp by Molmil
Crystal structure of active site F1-mutant E213Q soaked with peptide Pro-Leu-Gly-Gly
Descriptor: PLGG, PROLINE, Proline iminopeptidase
Authors:Goettig, P, Brandstetter, H, Groll, M, Goehring, W, Konarev, P.V, Svergun, D.I, Huber, R, Kim, J.-S.
Deposit date:2004-10-15
Release date:2005-07-12
Last modified:2021-11-10
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:X-ray snapshots of peptide processing in mutants of tricorn-interacting factor F1 from Thermoplasma acidophilum
J.Biol.Chem., 280, 2005
1N8V
DownloadVisualize
BU of 1n8v by Molmil
Chemosensory Protein in complex with bromo-dodecanol
Descriptor: BROMO-DODECANOL, chemosensory protein
Authors:Campanacci, V, Lartigue, A, Hallberg, B.M, Jones, T.A, Giudici-Orticoni, M.T, Tegoni, M, Cambillau, C.
Deposit date:2002-11-21
Release date:2003-04-01
Last modified:2017-02-01
Method:X-RAY DIFFRACTION (1.39 Å)
Cite:Moth chemosensory protein exhibits drastic conformational changes and cooperativity on ligand binding.
Proc.Natl.Acad.Sci.USA, 100, 2003
6YYP
DownloadVisualize
BU of 6yyp by Molmil
Structure of Cathepsin S in complex with Compound 2
Descriptor: 1-(furan-2-ylmethyl)-5-(trifluoromethyl)benzimidazol-2-amine, ACETATE ION, Cathepsin S, ...
Authors:Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
Deposit date:2020-05-05
Release date:2021-05-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.05 Å)
Cite:Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
1NEZ
DownloadVisualize
BU of 1nez by Molmil
The Crystal Structure of a TL/CD8aa Complex at 2.1A resolution:Implications for Memory T cell Generation, Co-receptor Preference and Affinity
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Beta-2-microglobulin, H-2 class I histocompatibility antigen, ...
Authors:Liu, Y, Xiong, Y, Naidenko, O.V, Liu, J.H, Zhang, R, Joachimiak, A, Kronenberg, M, Cheroutre, H, Reinherz, E.L, Wang, J.H.
Deposit date:2002-12-12
Release date:2003-04-08
Last modified:2020-07-29
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The Crystal Structure of a TL/CD8alphaalpha Complex at 2.1 A resolution: Implications for modulation of T cell activation and memory
Immunity, 18, 2003
6YYO
DownloadVisualize
BU of 6yyo by Molmil
Structure of Cathepsin S in complex with Compound 1
Descriptor: 1,2-ETHANEDIOL, 6-(4-methylsulfonylpiperazin-1-yl)-[1,2,4]triazolo[4,3-b]pyridazine, CITRATE ANION, ...
Authors:Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
Deposit date:2020-05-05
Release date:2021-05-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
6YYQ
DownloadVisualize
BU of 6yyq by Molmil
Structure of Cathepsin S in complex with Compound 3
Descriptor: (6~{R})-2-phenyl-5,6,7,8-tetrahydroquinazolin-6-amine, Cathepsin S
Authors:Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
Deposit date:2020-05-05
Release date:2021-05-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (2.51 Å)
Cite:Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
2W80
DownloadVisualize
BU of 2w80 by Molmil
Structure of a complex between Neisseria meningitidis factor H binding protein and CCPs 6-7 of human complement factor H
Descriptor: COMPLEMENT FACTOR H, FACTOR H BINDING PROTEIN
Authors:Schneider, M.C, Prosser, B.E, Caesar, J.J.E, Kugelberg, E, Li, S, Zhang, Q, Quoraishi, S, Lovett, J.E, Deane, J.E, Sim, R.B, Roversi, P, Johnson, S, Tang, C.M, Lea, S.M.
Deposit date:2009-01-08
Release date:2009-03-03
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.35 Å)
Cite:Neisseria Meningitidis Recruits Factor H Using Protein Mimicry of Host Carbohydrates.
Nature, 458, 2009
3K92
DownloadVisualize
BU of 3k92 by Molmil
Crystal structure of a E93K mutant of the majour Bacillus subtilis glutamate dehydrogenase RocG
Descriptor: DI(HYDROXYETHYL)ETHER, NAD-specific glutamate dehydrogenase
Authors:Gunka, K, Newman, J.A, Commichau, F.M, Herzberg, C, Rodrigues, C, Hewitt, L, Lewis, R.J, Stulke, J.
Deposit date:2009-10-15
Release date:2010-06-02
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Functional dissection of a trigger enzyme: mutations of the bacillus subtilis glutamate dehydrogenase RocG that affect differentially its catalytic activity and regulatory properties
J.Mol.Biol., 400, 2010
6YYR
DownloadVisualize
BU of 6yyr by Molmil
Structure of Cathepsin S in complex with Compound 20b
Descriptor: (2~{R})-~{N}-(2-azanylideneethyl)-2-[2-(3-methyl-1,2-oxazol-5-yl)ethanoylamino]-3-(4-pyridin-2-ylpiperazin-1-yl)sulfonyl-propanamide, 1,2-ETHANEDIOL, CITRATE ANION, ...
Authors:Wagener, M, Schade, M, Merla, B, Hars, U, Kueckelhaus, S.Q.
Deposit date:2020-05-05
Release date:2021-05-12
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.3 Å)
Cite:Highly Selective Sub-Nanomolar Cathepsin S Inhibitors by Merging Fragment Binders with Nitrile Inhibitors.
J.Med.Chem., 63, 2020
5UKO
DownloadVisualize
BU of 5uko by Molmil
Structure of unliganded anti-gp120 CD4bs antibody DH522IA Fab
Descriptor: DH522IA Fab fragment heavy chain, DH522IA Fab fragment light chain
Authors:Nicely, N.I.
Deposit date:2017-01-23
Release date:2017-12-06
Last modified:2023-10-04
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Initiation of HIV neutralizing B cell lineages with sequential envelope immunizations.
Nat Commun, 8, 2017
1YC2
DownloadVisualize
BU of 1yc2 by Molmil
Sir2Af2-NAD-ADPribose-nicotinamide
Descriptor: 1,2-ETHANEDIOL, ADENOSINE-5-DIPHOSPHORIBOSE, NAD-dependent deacetylase 2, ...
Authors:Avalos, J.L, Bever, M.K, Wolberger, C.
Deposit date:2004-12-21
Release date:2005-03-29
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Mechanism of Sirtuin Inhibition by Nicotinamide: Altering the NAD(+) Cosubstrate Specificity of a Sir2 Enzyme.
Mol.Cell, 17, 2005
8BI2
DownloadVisualize
BU of 8bi2 by Molmil
Syk kinase domain in complex with macrocyclic inhibitor 20a
Descriptor: 10,13,23-trimethyl-16-oxa-2,4,8,9,13,19,23,30-octazapentacyclo[19.5.2.1^{3,7}.1^{8,11}.0^{24,28}]triaconta-1(27),3,5,7(30),9,11(29),21,24(28),25-nonaen-20-one, Tyrosine-protein kinase SYK
Authors:Read, J.A, Patel, J.
Deposit date:2022-11-01
Release date:2023-06-14
Last modified:2024-05-01
Method:X-RAY DIFFRACTION (1.508 Å)
Cite:Optimization of a series of novel, potent and selective Macrocyclic SYK inhibitors.
Bioorg.Med.Chem.Lett., 91, 2023
1O8V
DownloadVisualize
BU of 1o8v by Molmil
The crystal structure of Echinococcus granulosus fatty-acid-binding protein 1
Descriptor: FATTY ACID BINDING PROTEIN HOMOLOG, PALMITIC ACID
Authors:Jakobsson, E, Alvite, G, Bergfors, T, Esteves, A, Kleywegt, G.J.
Deposit date:2002-12-04
Release date:2003-06-19
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The Crystal Structure of Echinococcus Granulosus Fatty-Acid-Binding Protein 1
Biochim.Biophys.Acta, 1649, 2003
1YGH
DownloadVisualize
BU of 1ygh by Molmil
HAT DOMAIN OF GCN5 FROM SACCHAROMYCES CEREVISIAE
Descriptor: GLYCEROL, PROTEIN (TRANSCRIPTIONAL ACTIVATOR GCN5)
Authors:Trievel, R.C, Rojas, J.R, Sterner, D.E, Venkataramani, R, Wang, L, Zhou, J, Allis, C.D, Berger, S.L, Marmorstein, R.
Deposit date:1999-05-27
Release date:1999-08-02
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Crystal structure and mechanism of histone acetylation of the yeast GCN5 transcriptional coactivator.
Proc.Natl.Acad.Sci.USA, 96, 1999
2WBW
DownloadVisualize
BU of 2wbw by Molmil
Ad37 fibre head in complex with CAR D1 and sialic acid
Descriptor: CALCIUM ION, COXSACKIEVIRUS AND ADENOVIRUS RECEPTOR, FIBER PROTEIN, ...
Authors:Seiradake, E, Henaff, D, Wodrich, H, Billet, O, Perreau, M, Hippert, C, Mennechet, F, Schoehn, G, Lortat-Jacob, H, Dreja, H, Ibanes, S, Kalatzis, V, Wang, J.P, Finberg, R.W, Cusack, S, Kremer, E.J.
Deposit date:2009-03-05
Release date:2009-03-17
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:The Cell Adhesion Molecule "Car" and Sialic Acid on Human Erythrocytes Influence Adenovirus in Vivo Biodistribution.
Plos Pathog., 5, 2009
8B78
DownloadVisualize
BU of 8b78 by Molmil
KRasG12C ligand complex
Descriptor: 1-[(4~{a}~{R})-8-(2-chloranyl-6-oxidanyl-phenyl)-7-fluoranyl-9-prop-1-ynyl-1,2,4,4~{a},5,11-hexahydropyrazino[2,1-c][1,4]benzoxazepin-3-yl]propan-1-one, GTPase KRas, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Phillips, C, Breed, J.
Deposit date:2022-09-29
Release date:2023-07-12
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (1.11 Å)
Cite:Discovery of AZD4747, a Potent and Selective Inhibitor of Mutant GTPase KRAS G12C with Demonstrable CNS Penetration.
J.Med.Chem., 66, 2023
5UKE
DownloadVisualize
BU of 5uke by Molmil
NMR structure of monomeric human IRAK-M Death Domain R56D, Y61E mutant
Descriptor: Interleukin-1 receptor-associated kinase 3
Authors:Kwon, J, Nicholson, L.K.
Deposit date:2017-01-20
Release date:2018-01-24
Last modified:2024-05-01
Method:SOLUTION NMR
Cite:The IL-33-PIN1-IRAK-M axis is critical for type 2 immunity in IL-33-induced allergic airway inflammation.
Nat Commun, 9, 2018
6Z8R
DownloadVisualize
BU of 6z8r by Molmil
Copper transporter OprC
Descriptor: COPPER (II) ION, Putative copper transport outer membrane porin OprC
Authors:Bhamidimarri, S.P, van den Berg, B.
Deposit date:2020-06-02
Release date:2021-06-09
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (2.38 Å)
Cite:Acquisition of ionic copper by the bacterial outer membrane protein OprC through a novel binding site.
Plos Biol., 19, 2021

222624

건을2024-07-17부터공개중

PDB statisticsPDBj update infoContact PDBjnumon