PDB: 98225 resultsInfo pagesStatus searchChemie searchBIRD

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6NKW	Ternary complex crystal structure of DNA polymerase Beta with "hot-spot sequence" with beta-gamma-methylene dGTP Descriptor: 2'-DEOXY-5'-O-(HYDROXY{[HYDROXY(PHOSPHONOMETHYL)PHOSPHORYL]OXY}PHOSPHORYL)GUANOSINE, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*AP*CP*AP*AP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2019-01-07 Release date: 2020-01-08 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Revealing an Internal Stabilization Deficiency in the DNA Polymerase beta K289M Cancer Variant through the Combined Use of Chemical Biology and X-ray Crystallography. Biochemistry, 59, 2020
6NL0	Ternary complex crystal structure of K289M variant of DNA polymerase Beta with "hot-spot sequence" with beta-gamma CF2 analogue of dGTP Descriptor: 2'-DEOXY-5'-O-[({[DIFLUORO(PHOSPHONO)METHYL](HYDROXY)PHOSPHORYL}OXY)(HYDROXY)PHOSPHORYL]GUANOSINE, CHLORIDE ION, DNA (5'-D(*CP*CP*GP*AP*AP*CP*AP*AP*GP*CP*AP*TP*CP*AP*GP*C)-3'), ... Authors: Batra, V.K, Wilson, S.H. Deposit date: 2019-01-07 Release date: 2020-01-08 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.97 Å) Cite: Revealing an Internal Stabilization Deficiency in the DNA Polymerase beta K289M Cancer Variant through the Combined Use of Chemical Biology and X-ray Crystallography. Biochemistry, 59, 2020
6WQ1	Eukaryotic LanCL2 protein Descriptor: LanC-like protein 2, ZINC ION Authors: Nair, S.K, Garg, N. Deposit date: 2020-04-28 Release date: 2021-05-05 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (2.295 Å) Cite: LanCLs add glutathione to dehydroamino acids generated at phosphorylated sites in the proteome. Cell, 184, 2021
6S7D	Self-complementary duplex DNA containing an internucleoside phosphoroselenolate Descriptor: BARIUM ION, CHLORIDE ION, DNA (5'-D(*GP*(XCI)P*CP*CP*CP*GP*GP*GP*AP*C)-3'), ... Authors: Conlon, P.F, Steinhogl, J, Vyle, J.S, Hall, J.P. Deposit date: 2019-07-04 Release date: 2019-11-06 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (1.45 Å) Cite: Solid-phase synthesis and structural characterisation of phosphoroselenolate-modified DNA: a backbone analogue which does not impose conformational bias and facilitates SAD X-ray crystallography. Chem Sci, 10, 2019
2HR1	Ternary structure of WT M.HhaI C5-Cytosine DNA methyltransferase with unmodified DNA and AdoHcy Descriptor: 5'-D(*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', 5'-D(*TP*GP*AP*TP*AP*GP*CP*GP*CP*TP*AP*TP*C)-3', Modification methylase HhaI, ... Authors: Shieh, F. Deposit date: 2006-07-19 Release date: 2006-09-19 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.96 Å) Cite: The Role of Arg165 Towards Base Flipping, Base Stabilization and Catalysis in M.HhaI. J.Mol.Biol., 362, 2006
7KCJ	The crystal structure of the translation initiation factor EIF4E5 from Leishmania major Descriptor: Eukaryotic translation initiation factor 4E type 5 Authors: Lima, G.B, Guimaraes, B.G. Deposit date: 2020-10-05 Release date: 2021-06-02 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.997 Å) Cite: The translation initiation factor EIF4E5 from Leishmania: crystal structure and interacting partners. Rna Biol., 18, 2021
6DU0	Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain Y395L mutant Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA primase large subunit, GLYCEROL, ... Authors: Salay, L.E, Chazin, W.J. Deposit date: 2018-06-18 Release date: 2018-12-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.82 Å) Cite: Yeast require redox switching in DNA primase. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6DI6	Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA primase large subunit, IRON/SULFUR CLUSTER Authors: Salay, L.E, Chazin, W.J. Deposit date: 2018-05-22 Release date: 2018-12-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.39 Å) Cite: Yeast require redox switching in DNA primase. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6DTV	Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain Y395F mutant Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA primase large subunit, IRON/SULFUR CLUSTER Authors: Salay, L.E, Chazin, W.J. Deposit date: 2018-06-18 Release date: 2018-12-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.12 Å) Cite: Yeast require redox switching in DNA primase. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
3VWJ	Ternary crystal structure of the human NKT TCR-CD1d-C20:2 complex Descriptor: (11Z,14E)-N-[(2S,3S,4R)-1-(alpha-D-galactopyranosyloxy)-3,4-dihydroxyoctadecan-2-yl]icosa-11,14-dienamide, 2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d, ... Authors: Wun, K.S, Rossjohn, J. Deposit date: 2012-08-24 Release date: 2012-10-03 Last modified: 2024-10-16 Method: X-RAY DIFFRACTION (3.093 Å) Cite: Human and mouse type I natural killer T cell antigen receptors exhibit different fine specificities for CD1d-antigen complex J.Biol.Chem., 287, 2012
3VWK	Ternary crystal structure of the human NKT TCR-CD1d-4'deoxy-alpha-galactosylceramide complex Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d, Beta-2-microglobulin, ... Authors: Wun, K.S, Rossjohn, J. Deposit date: 2012-08-24 Release date: 2012-10-03 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.935 Å) Cite: Human and mouse type I natural killer T cell antigen receptors exhibit different fine specificities for CD1d-antigen complex J.Biol.Chem., 287, 2012
7BBY	Crystal structure of aldo-keto reductase with C-terminal His tag from Agrobacterium tumefaciens Descriptor: Aryl-alcohol dehydrogenase, PHOSPHATE ION Authors: Snow, A, Sharma, M, Davies, G.J. Deposit date: 2020-12-18 Release date: 2022-01-12 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria. Proc.Natl.Acad.Sci.USA, 119, 2022
7BBZ	Crystal structure of apo aldo-keto reductase from Agrobacterium tumefaciens Descriptor: Aryl-alcohol dehydrogenase Authors: Snow, A, Sharma, M, Davies, G.J. Deposit date: 2020-12-18 Release date: 2022-01-12 Last modified: 2024-01-31 Method: X-RAY DIFFRACTION (1.77 Å) Cite: Oxidative desulfurization pathway for complete catabolism of sulfoquinovose by bacteria. Proc.Natl.Acad.Sci.USA, 119, 2022
6DTZ	Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain, Y397F mutant Descriptor: (4R)-2-METHYLPENTANE-2,4-DIOL, (4S)-2-METHYL-2,4-PENTANEDIOL, DNA primase large subunit, ... Authors: Salay, L.E, Chazin, W.J. Deposit date: 2018-06-18 Release date: 2018-12-12 Last modified: 2024-03-13 Method: X-RAY DIFFRACTION (1.36 Å) Cite: Yeast require redox switching in DNA primase. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6IPJ	Binary Complex of Human DNA Polymerase Mu with MndTTP Descriptor: DNA-directed DNA/RNA polymerase mu,DNA-directed DNA/RNA polymerase mu, MANGANESE (II) ION, SULFATE ION, ... Authors: Chang, Y.K, Wu, W.J, Tsai, M.D. Deposit date: 2018-11-03 Release date: 2019-05-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.98 Å) Cite: Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions. J.Am.Chem.Soc., 141, 2019
6IPN	Binary Complex of Human DNA Polymerase Mu with MgdGTP Descriptor: 2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA-directed DNA/RNA polymerase mu, MAGNESIUM ION, ... Authors: Chang, Y.K, Wu, W.J, Tsai, M.D. Deposit date: 2018-11-03 Release date: 2019-05-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions. J.Am.Chem.Soc., 141, 2019
6IPH	Binary Complex of Human DNA Polymerase Mu with MndATP Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA-directed DNA/RNA polymerase mu, MANGANESE (II) ION, ... Authors: Chang, Y.K, Wu, W.J, Tsai, M.D. Deposit date: 2018-11-03 Release date: 2019-05-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions. J.Am.Chem.Soc., 141, 2019
6IPK	Binary Complex of Human DNA Polymerase Mu with Mn8oxodGTP Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, 8-OXO-2'-DEOXYGUANOSINE-5'-TRIPHOSPHATE, DNA-directed DNA/RNA polymerase mu, ... Authors: Chang, Y.K, Wu, W.J, Tsai, M.D. Deposit date: 2018-11-03 Release date: 2019-05-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions. J.Am.Chem.Soc., 141, 2019
5V0L	Crystal structure of the AHR-ARNT heterodimer in complex with the DRE Descriptor: Aryl hydrocarbon receptor, Aryl hydrocarbon receptor nuclear translocator, CITRIC ACID, ... Authors: Seok, S.-H, Lee, W, Jiang, L, Bradfield, C.A, Xing, Y. Deposit date: 2017-02-28 Release date: 2017-04-19 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (4 Å) Cite: Structural hierarchy controlling dimerization and target DNA recognition in the AHR transcriptional complex. Proc. Natl. Acad. Sci. U.S.A., 114, 2017
6IPL	Binary Complex of Human DNA Polymerase Mu with MgdATP Descriptor: 2'-DEOXYADENOSINE 5'-TRIPHOSPHATE, DNA-directed DNA/RNA polymerase mu, MAGNESIUM ION, ... Authors: Chang, Y.K, Wu, W.J, Tsai, M.D. Deposit date: 2018-11-03 Release date: 2019-05-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.64 Å) Cite: Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions. J.Am.Chem.Soc., 141, 2019
6IPI	Binary Complex of Human DNA Polymerase Mu with MndCTP Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA-directed DNA/RNA polymerase mu, MANGANESE (II) ION, ... Authors: Chang, Y.K, Wu, W.J, Tsai, M.D. Deposit date: 2018-11-03 Release date: 2019-05-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions. J.Am.Chem.Soc., 141, 2019
6DI2	Crystal structure of eukaryotic DNA primase large subunit iron-sulfur cluster domain Y397L mutant Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, DNA primase large subunit, IRON/SULFUR CLUSTER Authors: Salay, L.E, Chazin, W.J. Deposit date: 2018-05-22 Release date: 2018-12-12 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (1.32 Å) Cite: Yeast require redox switching in DNA primase. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
6IPM	Binary Complex of Human DNA Polymerase Mu with MgdCTP Descriptor: 2'-DEOXYCYTIDINE-5'-TRIPHOSPHATE, DNA-directed DNA/RNA polymerase mu, MAGNESIUM ION, ... Authors: Chang, Y.K, Wu, W.J, Tsai, M.D. Deposit date: 2018-11-03 Release date: 2019-05-29 Last modified: 2024-03-27 Method: X-RAY DIFFRACTION (1.72 Å) Cite: Human DNA Polymerase mu Can Use a Noncanonical Mechanism for Multiple Mn2+-Mediated Functions. J.Am.Chem.Soc., 141, 2019
3S9D	binary complex between IFNa2 and IFNAR2 Descriptor: CHLORIDE ION, Interferon alpha-2, Interferon alpha/beta receptor 2 Authors: Thomas, C, Garcia, K.C. Deposit date: 2011-06-01 Release date: 2011-08-31 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (1.9999 Å) Cite: Structural linkage between ligand discrimination and receptor activation by type I interferons. Cell(Cambridge,Mass.), 146, 2011
8SUU	Crystal structure of YisK from Bacillus subtilis in apo form Descriptor: Fumarylacetoacetate hydrolase family protein, MANGANESE (II) ION Authors: Krieger, I.V, Chemelewski, V, Guo, T, Sperber, A, Herman, J, Sacchettini, J.C. Deposit date: 2023-05-13 Release date: 2023-11-01 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.26 Å) Cite: Bacillus subtilis YisK possesses oxaloacetate decarboxylase activity and exhibits Mbl-dependent localization. J.Bacteriol., 206, 2024

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