PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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6UET	SAM-bound SAM-IV riboswitch Descriptor: RNA (119-MER), S-ADENOSYLMETHIONINE Authors: Zhang, K, Li, S, Kappel, K, Pintilie, G, Su, Z, Mou, T, Schmid, M, Das, R, Chiu, W. Deposit date: 2019-09-23 Release date: 2019-12-18 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (4.1 Å) Cite: Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 angstrom resolution. Nat Commun, 10, 2019
6UES	Apo SAM-IV Riboswitch Descriptor: RNA (119-MER) Authors: Zhang, K, Li, S, Kappel, K, Pintilie, G, Su, Z, Mou, T, Schmid, M, Das, R, Chiu, W. Deposit date: 2019-09-23 Release date: 2019-12-18 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (3.7 Å) Cite: Cryo-EM structure of a 40 kDa SAM-IV riboswitch RNA at 3.7 angstrom resolution. Nat Commun, 10, 2019
6Q99	Ande virus L protein N-terminus mutant K124A Descriptor: GLYCEROL, MANGANESE (III) ION, RNA polymerase Authors: Fernandez-Garcia, Y, Holm, T, Kirchmair, J, Wurr, S, Gunther, S, Reindl, S. Deposit date: 2018-12-17 Release date: 2020-01-15 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (2.951 Å) Cite: Specific inhibition of a diverse set of segmented negative strand viruses by a single molecule To Be Published
2B2D	RNA stemloop operator from bacteriophage QBETA complexed with an N87S,E89K mutant MS2 capsid Descriptor: 5'-R(*AP*UP*GP*CP*AP*UP*GP*UP*CP*UP*AP*AP*GP*AP*CP*AP*GP*CP*AP*U)-3', Coat protein Authors: Horn, W.T, Tars, K, Grahn, E, Helgstrand, C, Baron, A.J, Lago, H, Adams, C.J, Peabody, D.S, Phillips, S.E.V, Stonehouse, N.J, Liljas, L, Stockley, P.G. Deposit date: 2005-09-19 Release date: 2006-05-09 Last modified: 2023-10-25 Method: X-RAY DIFFRACTION (2.9 Å) Cite: Structural basis of RNA binding discrimination between bacteriophages Qbeta and MS2 Structure, 14, 2006
3JA5	Genome and RdRp structure within the capsid of no-transcribing cypovirus Descriptor: RNA-dependent RNA polymerase Authors: Liu, H, Cheng, L. Deposit date: 2015-04-21 Release date: 2015-10-28 Last modified: 2024-03-20 Method: ELECTRON MICROSCOPY (12 Å) Cite: Cryo-EM shows the polymerase structures and a nonspooled genome within a dsRNA virus. Science, 349, 2015
8QHP	Cysteine tRNA ligase homodimer Descriptor: Cysteine--tRNA ligase, ZINC ION Authors: Pacesa, M, Correia, B.E, Levy, E.D. Deposit date: 2023-09-08 Release date: 2023-11-29 Last modified: 2024-02-28 Method: ELECTRON MICROSCOPY (2.8 Å) Cite: An atlas of protein homo-oligomerization across domains of life. Cell, 187, 2024
1G4Q	RNA/DNA HYBRID DECAMER OF CAAAGAAAAG/CTTTTCTTTG Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 5'-D(*CP*TP*TP*TP*TP*CP*TP*TP*TP*G)-3', 5'-R(*CP*AP*AP*AP*GP*AP*AP*AP*AP*G)-3', ... Authors: Han, G.W. Deposit date: 2000-10-27 Release date: 2003-07-08 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.15 Å) Cite: Direct-methods determination of an RNA/DNA hybrid decamer at 1.15 A resolution. Acta Crystallogr.,Sect.D, 57, 2001
1Q9E	RNase T1 variant with adenine specificity Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Guanyl-specific ribonuclease T1 precursor Authors: Czaja, R, Struhalla, M, Hoeschler, K, Saenger, W, Straeter, N, Hahn, U. Deposit date: 2003-08-25 Release date: 2004-03-23 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.7 Å) Cite: RNase T1 Variant RV Cleaves Single-Stranded RNA after Purines Due to Specific Recognition by the Asn46 Side Chain Amide. Biochemistry, 43, 2004
8F7A	Cryo-EM structure of Importin-9 bound to RanGTP Descriptor: GTP-binding nuclear protein GSP1/CNR1, GUANOSINE-5'-TRIPHOSPHATE, Importin-9, ... Authors: Bernardes, N.E, Chook, Y.M. Deposit date: 2022-11-18 Release date: 2023-07-26 Last modified: 2024-05-22 Method: ELECTRON MICROSCOPY (3.78 Å) Cite: Mechanism of RanGTP priming H2A-H2B release from Kap114 in an atypical RanGTP•Kap114•H2A-H2B complex. Proc.Natl.Acad.Sci.USA, 120, 2023
1BNS	STRUCTURAL STUDIES OF BARNASE MUTANTS Descriptor: BARNASE Authors: Chen, Y.W. Deposit date: 1994-04-11 Release date: 1994-06-22 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Contribution of buried hydrogen bonds to protein stability. The crystal structures of two barnase mutants. J.Mol.Biol., 234, 1993
3WOD	RNA polymerase-gp39 complex Descriptor: DNA-directed RNA polymerase subunit alpha, DNA-directed RNA polymerase subunit beta, DNA-directed RNA polymerase subunit beta', ... Authors: Tagami, S, Sekine, S, Minakhin, L, Esyunina, D, Akasaka, R, Shirouzu, M, Kulbachinskiy, A, Severinov, K, Yokoyama, S. Deposit date: 2013-12-26 Release date: 2014-03-12 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (3.6 Å) Cite: Structural basis for promoter specificity switching of RNA polymerase by a phage factor. Genes Dev., 28, 2014
3UQS	Crystal structures of murine norovirus RNA-dependent RNA polymerase Descriptor: RNA-dependent RNA polymerase, SULFATE ION Authors: Milani, M, Mastrangelo, E, Bolognesi, M. Deposit date: 2011-11-21 Release date: 2012-05-02 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Structure-Based Inhibition of Norovirus RNA-Dependent RNA Polymerases. J.Mol.Biol., 419, 2012
2KRY	Solution structure of the human mitochondrial tRNAMet ASL containing the 5-formylcytidine modification in position 34 Descriptor: RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*(RSQ)P*AP*UP*AP*CP*CP*CP*CP*GP*A)-3') Authors: Bilbille, Y, Agris, P.F. Deposit date: 2009-12-23 Release date: 2010-08-18 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: The Human Mitochondrial tRNAMet ASL structure solved by Nuclear Magnetic Resonance To be Published
2KRZ	Solution structure of the Human Mitochondrial tRNAMet Descriptor: RNA (5'-R(*(PSU)P*CP*GP*GP*GP*CP*CP*CP*AP*UP*AP*CP*CP*CP*CP*GP*A)-3') Authors: Bilbille, Y, Agris, P.F. Deposit date: 2009-12-23 Release date: 2010-08-18 Last modified: 2024-05-08 Method: SOLUTION NMR Cite: The Human Mitochondrial tRNAMet ASL structure solved by Nuclear Magnetic Resonance To be Published
3R1C	Crystal structure of GCGGCGGC duplex Descriptor: RNA (5'-R(*GP*CP*GP*GP*CP*GP*GP*C)-3'), SULFATE ION Authors: Kiliszek, A, Kierzek, R, Krzyzosiak, W.J, Rypniewski, W. Deposit date: 2011-03-10 Release date: 2011-06-01 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.0531 Å) Cite: Crystal structures of CGG RNA repeats with implications for fragile X-associated tremor ataxia syndrome. Nucleic Acids Res., 39, 2011
2JL9	Structural explanation for the role of Mn in the activity of phi6 RNA- dependent RNA polymerase Descriptor: RNA-DIRECTED RNA POLYMERASE Authors: Poranen, M.M, Salgado, P.S, Koivunen, M.R.L, Wright, S, Bamford, D.H, Stuart, D.I, Grimes, J.M. Deposit date: 2008-09-05 Release date: 2008-11-04 Last modified: 2024-05-08 Method: X-RAY DIFFRACTION (3.2 Å) Cite: Structural Explanation for the Role of Mn2+ in the Activity of {Phi}6 RNA-Dependent RNA Polymerase. Nucleic Acids Res., 36, 2008
1OSU	STRUCTURE OF THE RNA HEXAMER, R(UUCGCG), WITH A 5'-UU-OVERHANG EXHIBITING HOOGSTEEN-LIKE TRANS U-U BASE PAIRS Descriptor: RNA (5'-R(*UP*UP*CP*GP*CP*G)-3') Authors: Wahl, M.C, Rao, S.T, Sundaralingam, M. Deposit date: 1995-11-08 Release date: 1996-04-04 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (1.4 Å) Cite: The structure of r(UUCGCG) has a 5'-UU-overhang exhibiting Hoogsteen-like trans U.U base pairs. Nat.Struct.Biol., 3, 1996
6FQL	Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with mab-10 3'UTR 13mer RNA Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase TRIM71, RNA (5'-R(*UP*GP*CP*AP*UP*UP*UP*AP*AP*UP*GP*CP*A)-3') Authors: Kumari, P, Aeschimann, F, Gaidatzis, D, Keusch, J.J, Ghosh, P, Neagu, A, Pachulska-Wieczorek, K, Bujnicki, J.M, Gut, H, Grosshans, H, Ciosk, R. Deposit date: 2018-02-14 Release date: 2018-05-09 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (2.349 Å) Cite: Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition. Nat Commun, 9, 2018
6FQ3	Crystal structure of Danio rerio Lin41 filamin-NHL domains in complex with lin-29A 5'UTR 13mer RNA Descriptor: CHLORIDE ION, E3 ubiquitin-protein ligase TRIM71, RNA (5'-R(*GP*GP*AP*GP*UP*CP*CP*AP*AP*CP*UP*CP*C)-3') Authors: Kumari, P, Aeschimann, F, Gaidatzis, D, Keusch, J.J, Ghosh, P, Neagu, A, Pachulska-Wieczorek, K, Bujnicki, J.M, Gut, H, Grosshans, H, Ciosk, R. Deposit date: 2018-02-13 Release date: 2018-05-09 Last modified: 2024-01-17 Method: X-RAY DIFFRACTION (1.901 Å) Cite: Evolutionary plasticity of the NHL domain underlies distinct solutions to RNA recognition. Nat Commun, 9, 2018
7F0S	A crystal structure of alphavirus nonstructural protein 4 (nsP4) reveals an intrinsically 1dynamic RNA-dependent RNA polymerase Descriptor: RNA-directed RNA polymerase nsP4 Authors: Tan, Y.B, Luo, D. Deposit date: 2021-06-06 Release date: 2022-02-16 Last modified: 2024-05-29 Method: X-RAY DIFFRACTION (2.6 Å) Cite: Crystal structures of alphavirus nonstructural protein 4 (nsP4) reveal an intrinsically dynamic RNA-dependent RNA polymerase fold. Nucleic Acids Res., 50, 2022
4O1P	Crystal Structure of RNase L in complex with 2-5A and AMP-PNP Descriptor: MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER, Ribonuclease L, ... Authors: Huang, H, Zeqiraj, E, Ceccarelli, D.F, Sicheri, F. Deposit date: 2013-12-16 Release date: 2014-02-05 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Dimeric structure of pseudokinase RNase L bound to 2-5A reveals a basis for interferon-induced antiviral activity. Mol.Cell, 53, 2014
5EQJ	Crystal structure of the two-subunit tRNA m1A58 methyltransferase from Saccharomyces cerevisiae Descriptor: tRNA (adenine(58)-N(1))-methyltransferase catalytic subunit TRM61, tRNA (adenine(58)-N(1))-methyltransferase non-catalytic subunit TRM6 Authors: Zhu, Y, Wang, M, Wang, C, Fan, X, Jiang, X, Teng, M, Li, X. Deposit date: 2015-11-13 Release date: 2016-09-14 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Crystal structure of the two-subunit tRNA m(1)A58 methyltransferase TRM6-TRM61 from Saccharomyces cerevisiae. Sci Rep, 6, 2016
1IKD	ACCEPTOR STEM, NMR, 30 STRUCTURES Descriptor: TRNA ALA ACCEPTOR STEM Authors: Ramos, A, Varani, G. Deposit date: 1996-11-15 Release date: 1997-04-01 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Structure of the acceptor stem of Escherichia coli tRNA Ala: role of the G3.U70 base pair in synthetase recognition. Nucleic Acids Res., 25, 1997
4DZS	Crystal structure of yeast Puf4p RNA binding domain in complex with HO-4BE mutant RNA Descriptor: 5'-R(*UP*GP*UP*AP*UP*CP*AP*UP*A)-3', Pumilio homology domain family member 4 Authors: Qiu, C, Hall, T.M.T. Deposit date: 2012-03-01 Release date: 2012-04-25 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3.14 Å) Cite: Patterns and plasticity in RNA-protein interactions enable recruitment of multiple proteins through a single site. Proc.Natl.Acad.Sci.USA, 109, 2012
1O6W	Solution Structure of the Prp40 WW Domain Pair of the Yeast Splicing Factor Prp40 Descriptor: PRE-MRNA PROCESSING PROTEIN PRP40 Authors: Wiesner, S, Stier, G, Sattler, M, Macias, M.J. Deposit date: 2002-10-16 Release date: 2002-12-04 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Solution Structure and Ligand Recognition of the Ww Domain Pair of the Yeast Splicing Factor Prp40 J.Mol.Biol., 324, 2002

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