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339D	STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA Descriptor: DNA (5'-D(*GP*(5CM)P*GP*CP*GP*(5CM)P*GP*C)-3') Authors: Mooers, B.H.M, Eichman, B.F, Ho, P.S. Deposit date: 1997-06-26 Release date: 1997-07-21 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA To be Published
1FKZ	NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE 29-39 K-RAS GENE SEQUENCE: CC CT C+C C+T, 2 STRUCTURES Descriptor: DNA (5'-D(*GP*AP*GP*CP*TP*CP*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*CP*CP*AP*GP*CP*TP*C)-3') Authors: Boulard, Y, Cognet, J.A.H, Fazakerley, G.V. Deposit date: 1996-10-09 Release date: 1997-03-12 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics. J.Mol.Biol., 268, 1997
1FQ2	CRYSTAL STRUCTURE ANALYSIS OF THE POTASSIUM FORM OF B-DNA DODECAMER CGCGAATTCGCG Descriptor: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3'), MAGNESIUM ION, SPERMINE Authors: Williams, L.D, Sines, C.C, McFail-Isom, L, Howerton, S.B, VanDerveer, D. Deposit date: 2000-09-01 Release date: 2000-11-27 Last modified: 2024-02-07 Method: X-RAY DIFFRACTION (1.2 Å) Cite: Cations Mediate B-DNA Conformational Heterogeneity J.Am.Chem.Soc., 122, 2000
345D	STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA Descriptor: DNA (5'-D(*GP*(5CM)P*GP*CP*GP*CP*GP*C)-3') Authors: Mooers, B.H.M, Eichman, B.F, Ho, P.S. Deposit date: 1997-08-15 Release date: 1997-08-29 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (1.85 Å) Cite: Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA To be Published
342D	STRUCTURAL PARAMETERS FROM SINGLE-CRYSTAL STRUCTURES FOR ACCURATE MODELS OF A-DNA Descriptor: DNA (5'-D(*GP*(5CM)P*GP*(5CM)P*GP*(5CM)P*GP*C)-3') Authors: Mooers, B.H.M, Eichman, B.F, Ho, P.S. Deposit date: 1997-06-26 Release date: 1997-07-21 Last modified: 2024-02-21 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Structural Parameters from Single-Crystal Structures for Accurate Models of A-DNA To be Published
2N7E	Solution structure of the UBL domain of yeast Ddi1 Descriptor: DNA damage-inducible protein 1 Authors: Siva, M, Grantz Saskova, K, Veverka, V. Deposit date: 2015-09-09 Release date: 2016-07-20 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural studies of the yeast DNA damage-inducible protein Ddi1 reveal domain architecture of this eukaryotic protein family. Sci Rep, 6, 2016
2N0Q	N2-dG-IQ modified DNA at the G1 position of the NarI recognition sequence Descriptor: DNA_(5'-D(*CP*TP*CP*(IQG)P*GP*CP*GP*CP*CP*AP*TP*C)-3'), DNA_(5'-D(*GP*AP*TP*GP*GP*CP*GP*CP*CP*GP*AP*G)-3') Authors: Stavros, K, Hawkins, E, Rizzo, C, Stone, M. Deposit date: 2015-03-11 Release date: 2015-08-19 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Base-Displaced Intercalated Conformation of the 2-Amino-3-methylimidazo[4,5-f]quinoline N(2)-dG DNA Adduct Positioned at the Nonreiterated G(1) in the NarI Restriction Site. Chem.Res.Toxicol., 28, 2015
2IE1	Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography Descriptor: DNA (5'-D(*DCP*DGP*DCP*DGP*DCP*DG)-3'), N-(2-AMINOETHYL)-N'-{2-[(2-AMINOETHYL)AMINO]ETHYL}ETHANE-1,2-DIAMINE Authors: Ohishi, H, Odoko, M, Tsukamoto, K, Hiyama, Y, Maezaki, N, Grzeskowiak, K, Ishida, T, Tanaka, T, Okabe, N, Fukuyama, K. Deposit date: 2006-09-16 Release date: 2007-10-09 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.6 Å) Cite: Polyamines stabilize left-handed Z-DNA. We found new type of polyamine which stabilize left-handed Z-DNA by X-ray crystallography To be Published
6V1W	NMR Structure of C-terminal Domain of phi29 ATPase Descriptor: DNA packaging protein Authors: Mahler, B, Mao, H, Morais, M.C. Deposit date: 2019-11-21 Release date: 2020-09-30 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: NMR structure of a vestigial nuclease provides insight into the evolution of functional transitions in viral dsDNA packaging motors. Nucleic Acids Res., 48, 2020
7OW0	1.55 A crystal structure of DNA/2'-O-methyl-RNA heteroduplex with overhangs solved by Zn-SAD. Descriptor: DNA (5'-D(*TP*CP*TP*CP*CP*TP*AP*GP*G)-3'), RNA (5'-R(*(OMC)P*(OMU)P*(A2M)P*(OMG)P*(OMG)P*(A2M)P*(OMG)P*(A2M)P*(OMC))-3'), ZINC ION Authors: Dolot, R.M, Maciaszek, A, Nawrot, B.C. Deposit date: 2021-06-15 Release date: 2021-07-14 Last modified: 2024-06-19 Method: X-RAY DIFFRACTION (1.55 Å) Cite: First High-Resolution Crystal Structures of DNA:2'-O-Methyl-RNA Heteroduplexes Crystals, 2022
7RAY	Crystal structure of MBD2 with DNA Descriptor: DNA (5'-D(*GP*CP*CP*AP*A)-R(P*(5MC))-D(P*GP*TP*TP*GP*GP*C)-3'), Methyl-CpG-binding domain protein 2, UNKNOWN ATOM OR ION Authors: Liu, K, Dong, A, Loppnau, P, Edwards, A.M, Arrowsmith, C.H, Min, J, Structural Genomics Consortium (SGC) Deposit date: 2021-07-05 Release date: 2021-07-21 Last modified: 2023-10-18 Method: X-RAY DIFFRACTION (1.78 Å) Cite: Crystal structure of MBD2 with DNA To Be Published
1FKY	NMR STUDY OF B-DNA CONTAINING A MISMATCHED BASE PAIR IN THE 29-39 K-RAS GENE SEQUENCE: CC CT C+C C+T, 2 STRUCTURES Descriptor: DNA (5'-D(*GP*AP*GP*CP*TP*TP*GP*TP*GP*GP*C)-3'), DNA (5'-D(*GP*CP*CP*AP*CP*CP*AP*GP*CP*TP*C)-3') Authors: Boulard, Y, Cognet, J.A.H, Fazakerley, G.V. Deposit date: 1996-10-09 Release date: 1997-04-01 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: Solution structure as a function of pH of two central mismatches, C . T and C . C, in the 29 to 39 K-ras gene sequence, by nuclear magnetic resonance and molecular dynamics. J.Mol.Biol., 268, 1997
7OU4	The structure of MutS bound to one molecule of ATP and one molecule of ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, ADENOSINE-5'-TRIPHOSPHATE, DNA mismatch repair protein MutS, ... Authors: Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V. Deposit date: 2021-06-11 Release date: 2022-01-12 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.3 Å) Cite: Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair. Nat.Struct.Mol.Biol., 29, 2022
7OU0	The structure of MutS bound to two molecules of ADP-Vanadate Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS, MAGNESIUM ION, ... Authors: Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V. Deposit date: 2021-06-10 Release date: 2022-01-12 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (3.8 Å) Cite: Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair. Nat.Struct.Mol.Biol., 29, 2022
7OU2	The structure of MutS bound to two molecules of ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, DNA mismatch repair protein MutS Authors: Lamers, M.H, Borsellini, A, Friedhoff, P, Kunetsky, V. Deposit date: 2021-06-11 Release date: 2022-01-12 Last modified: 2024-07-17 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Cryogenic electron microscopy structures reveal how ATP and DNA binding in MutS coordinates sequential steps of DNA mismatch repair. Nat.Struct.Mol.Biol., 29, 2022
4RKI	Crystal structure of sliding beta clamp from Helicobacter pylori Descriptor: DNA polymerase III subunit beta Authors: Satyawali, P, Tarique, K.F, Abdul Rehman, S.A, Gourinath, S. Deposit date: 2014-10-13 Release date: 2016-01-13 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural insight into beta-Clamp and its interaction with DNA Ligase in Helicobacter pylori. Sci Rep, 6, 2016
4Z2Z	New crystal structure of yeast Ddi1 aspartyl protease reveals substrate engagement mode Descriptor: DNA damage-inducible protein 1 Authors: Trempe, J.-F, Feng, X, Gehring, K. Deposit date: 2015-03-30 Release date: 2016-04-13 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.8 Å) Cite: Structural studies of the yeast DNA damage-inducible protein Ddi1 reveal domain architecture of this eukaryotic protein family. Sci Rep, 6, 2016
3SJM	Crystal Structure Analysis of TRF2-Dbd-DNA complex Descriptor: DNA (5'-D(*CP*TP*CP*TP*AP*GP*GP*GP*TP*TP*AP*GP*GP*GP*TP*TP*AP*G)-3'), DNA (5'-D(*TP*CP*TP*AP*AP*CP*CP*CP*TP*AP*AP*CP*CP*CP*TP*AP*GP*A)-3'), Telomeric repeat-binding factor 2 Authors: Nair, S.K, Sliverman, S.K, Chen, J.H, Xiao, Y. Deposit date: 2011-06-21 Release date: 2012-10-31 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.35 Å) Cite: Crystal Structure Analysis of TRF2-Dbd-DNA complex To be Published
2OD8	Structure of a peptide derived from Cdc9 bound to PCNA Descriptor: DNA ligase I, mitochondrial precursor, Proliferating cell nuclear antigen Authors: Chapados, B.R, Tainer, J.A. Deposit date: 2006-12-21 Release date: 2007-05-01 Last modified: 2023-08-30 Method: X-RAY DIFFRACTION (2.8 Å) Cite: The C-terminal domain of yeast PCNA is required for physical and functional interactions with Cdc9 DNA ligase. Nucleic Acids Res., 35, 2007
8VNU	Homing endonuclease H98A I-PpoI-DNA complex at pH6.0 (K+ MES) with 70 mM Tl+ for 1800s Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-17 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VMS	Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 80s Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.42 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNM	Homing endonuclease I-PpoI-DNA complex:reaction at pH6.0 (K+ MES) with 500 uM Mn2+ for 320s Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.59 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VMU	Homing endonuclease I-PpoI-DNA complex:reaction at pH7.0 (K+ MES) with 500 uM Mg2+ for 320s Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.52 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VN5	Homing endonuclease I-PpoI-DNA complex:ground state at pH8.0 (Tris) with Na+ Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published
8VNP	Homing endonuclease I-PpoI-DNA complex at pH6.0 (K+ MES) with 0.2 M sodium malonate Descriptor: DNA (5'-D(*TP*TP*GP*AP*CP*TP*CP*TP*CP*TP*TP*AP*AP*GP*AP*GP*AP*GP*TP*CP*A)-3'), GLYCEROL, Intron-encoded endonuclease I-PpoI, ... Authors: Chang, C, Gao, Y. Deposit date: 2024-01-13 Release date: 2024-07-10 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Homing endonuclease I-PpoI-DNA complex:reaction with 500 uM Mg2+ for 160s To Be Published

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