1V0H
 
 | | ASCOBATE PEROXIDASE FROM SOYBEAN CYTOSOL IN COMPLEX WITH SALICYLHYDROXAMIC ACID | | Descriptor: | ASCORBATE PEROXIDASE, PROTOPORPHYRIN IX CONTAINING FE, SALICYLHYDROXAMIC ACID, ... | | Authors: | Sharp, K.H, Raven, E.L, Moody, P.C.E. | | Deposit date: | 2004-03-29 | | Release date: | 2004-06-23 | | Last modified: | 2023-12-13 | | Method: | X-RAY DIFFRACTION (1.46 Å) | | Cite: | Crystal Structure of the Ascorbate Peroxidase-Salicylhydroxamic Acid Complex
Biochemistry, 43, 2004
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1XXX
 | | Crystal structure of Dihydrodipicolinate Synthase (DapA, Rv2753c) from Mycobacterium tuberculosis | | Descriptor: | 2,3-DIHYDROXY-1,4-DITHIOBUTANE, CHLORIDE ION, Dihydrodipicolinate synthase, ... | | Authors: | Kefala, G, Panjikar, S, Janowski, R, Weiss, M.S, TB Structural Genomics Consortium (TBSGC) | | Deposit date: | 2004-11-09 | | Release date: | 2006-02-14 | | Last modified: | 2023-08-23 | | Method: | X-RAY DIFFRACTION (2.28 Å) | | Cite: | Crystal structure and kinetic study of dihydrodipicolinate synthase from Mycobacterium tuberculosis.
Biochem.J., 411, 2008
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1LNH
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1S07
 | | Crystal Structure of the R253A Mutant of 7,8-Diaminopelargonic Acid Synthase | | Descriptor: | Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, ISOPROPYL ALCOHOL, PYRIDOXAL-5'-PHOSPHATE, ... | | Authors: | Sandmark, J, Eliot, A.C, Famm, K, Schneider, G, Kirsch, J.F. | | Deposit date: | 2003-12-30 | | Release date: | 2004-03-23 | | Last modified: | 2024-04-03 | | Method: | X-RAY DIFFRACTION (2.42 Å) | | Cite: | Conserved and nonconserved residues in the substrate binding site of 7,8-diaminopelargonic acid synthase from Escherichia coli are essential for catalysis.
Biochemistry, 43, 2004
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1JNQ
 | | LIPOXYGENASE-3 (SOYBEAN) COMPLEX WITH EPIGALLOCATHECHIN (EGC) | | Descriptor: | 2-(3,4,5-TRIHYDROXY-PHENYL)-CHROMAN-3,5,7-TRIOL, FE (II) ION, lipoxygenase-3 | | Authors: | Zhou, K, Skrzypczak-Jankun, E, Jankun, J. | | Deposit date: | 2001-07-24 | | Release date: | 2003-06-03 | | Last modified: | 2023-08-16 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Inhibition of lipoxygenase by (-)-epigallocatechin gallate: X-ray analysis at 2.1 A reveals degradation of EGCG
and shows soybean LOX-3 complex with EGC instead.
INT.J.MOL.MED., 12, 2003
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8DSK
 | | Structure of the N358Y variant of serine hydroxymethyltransferase 8 in complex with PLP, glycine, and formyl tetrahydrofolate | | Descriptor: | 1,2-ETHANEDIOL, N-GLYCINE-[3-HYDROXY-2-METHYL-5-PHOSPHONOOXYMETHYL-PYRIDIN-4-YL-METHANE], N-[4-({[(6S)-2-amino-5-formyl-4-oxo-3,4,5,6,7,8-hexahydropteridin-6-yl]methyl}amino)benzoyl]-L-glutamic acid, ... | | Authors: | Korasick, D.A, Beamer, L.J. | | Deposit date: | 2022-07-22 | | Release date: | 2023-10-18 | | Last modified: | 2024-01-31 | | Method: | X-RAY DIFFRACTION (1.63 Å) | | Cite: | Structural and functional analysis of two SHMT8 variants associated with soybean cyst nematode resistance.
Febs J., 291, 2024
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2SBL
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1WDS
 | | The role of an inner loop in the catalytic mechanism of soybean beta-amylase | | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose, ... | | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | | Deposit date: | 2004-05-17 | | Release date: | 2005-04-05 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (1.64 Å) | | Cite: | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism.
Biochemistry, 44, 2005
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1S6J
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1U9Z
 | | Crystal Structure of Phosphoribosyl Diphosphate Synthase Complexed with AMP and Ribose 5-Phosphate | | Descriptor: | ADENOSINE MONOPHOSPHATE, RIBOSE-5-PHOSPHATE, Ribose-phosphate pyrophosphokinase | | Authors: | Kadziola, A, Johansson, E, Jepsen, C.H, McGuire, J, Larsen, S, Hove-Jensen, B. | | Deposit date: | 2004-08-11 | | Release date: | 2005-08-23 | | Last modified: | 2023-08-23 | | Method: | X-RAY DIFFRACTION (2.8 Å) | | Cite: | Novel class III phosphoribosyl diphosphate synthase: structure and properties of the tetrameric, phosphate-activated, non-allosterically inhibited enzyme from Methanocaldococcus jannaschii
J.Mol.Biol., 354, 2005
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1WDP
 | | The role of an inner loop in the catalytic mechanism of soybean beta-amylase | | Descriptor: | Beta-amylase, SULFATE ION | | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | | Deposit date: | 2004-05-17 | | Release date: | 2005-04-05 | | Last modified: | 2024-03-13 | | Method: | X-RAY DIFFRACTION (1.27 Å) | | Cite: | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism.
Biochemistry, 44, 2005
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1UD1
 | | Crystal structure of proglycinin mutant C88S | | Descriptor: | Glycinin G1 | | Authors: | Utsumi, S, Adachi, M. | | Deposit date: | 2003-04-24 | | Release date: | 2004-02-03 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (3.1 Å) | | Cite: | Crystal Structures and Structural Stabilities of the Disulfide Bond-Deficient Soybean Proglycinin Mutants C12G and C88S.
J.Agric.Food Chem., 51, 2003
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1WDR
 | | The role of an inner loop in the catalytic mechanism of soybean beta-amylase | | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose, ... | | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | | Deposit date: | 2004-05-17 | | Release date: | 2005-04-05 | | Last modified: | 2021-11-10 | | Method: | X-RAY DIFFRACTION (1.35 Å) | | Cite: | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism.
Biochemistry, 44, 2005
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7SOJ
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1WDQ
 | | The role of an inner loop in the catalytic mechanism of soybean beta-amylase | | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | | Deposit date: | 2004-05-17 | | Release date: | 2005-04-05 | | Last modified: | 2024-05-29 | | Method: | X-RAY DIFFRACTION (1.28 Å) | | Cite: | Structural analysis of threonine 342 mutants of soybean beta-amylase: role of a conformational change of the inner loop in the catalytic mechanism.
Biochemistry, 44, 2005
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3A68
 | | Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin | | Descriptor: | ACETIC ACID, CALCIUM ION, Ferritin-4, ... | | Authors: | Masuda, T, Goto, F, Yoshihara, T, Mikami, B. | | Deposit date: | 2009-08-26 | | Release date: | 2009-12-08 | | Last modified: | 2023-11-01 | | Method: | X-RAY DIFFRACTION (1.8 Å) | | Cite: | Crystal structure of plant ferritin reveals a novel metal binding site that functions as a transit site for metal transfer in ferritin
J.Biol.Chem., 285, 2010
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7SOI
 | | Structure of I552A Soybean Lipoxygenase at 277K | | Descriptor: | FE (III) ION, Lipoxygenase, SODIUM ION | | Authors: | Gee, C.L, Offenbacher, A.R, Hu, S. | | Deposit date: | 2021-10-31 | | Release date: | 2022-11-09 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Temporal and spatial resolution of distal protein motions that activate hydrogen tunneling in soybean lipoxygenase.
Proc.Natl.Acad.Sci.USA, 120, 2023
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1UCX
 | | Crystal structure of proglycinin C12G mutant | | Descriptor: | Glycinin G1 | | Authors: | Utsumi, S, Adachi, M. | | Deposit date: | 2003-04-24 | | Release date: | 2004-02-03 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (3.2 Å) | | Cite: | Crystal Structures and Structural Stabilities of the Disulfide Bond-Deficient Soybean Proglycinin Mutants C12G and C88S.
J.Agric.Food Chem., 51, 2003
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1ROV
 | | Lipoxygenase-3 Treated with Cumene Hydroperoxide | | Descriptor: | FE (III) ION, Seed lipoxygenase-3 | | Authors: | Vahedi-Faridi, A, Brault, P.A, Shah, P, Kim, Y.W, Dunham, W.R, Funk, M.O. | | Deposit date: | 2003-12-02 | | Release date: | 2004-03-16 | | Last modified: | 2011-07-13 | | Method: | X-RAY DIFFRACTION (2 Å) | | Cite: | Interaction between non-heme iron of lipoxygenases and cumene hydroperoxide: basis for enzyme activation, inactivation, and inhibition
J.Am.Chem.Soc., 126, 2004
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1UIK
 | | Crystal structure of soybean beta-conglycinin alpha prime homotrimer | | Descriptor: | MAGNESIUM ION, alpha prime subunit of beta-conglycinin | | Authors: | Maruyama, Y, Maruyama, N, Mikami, B, Utsumi, S. | | Deposit date: | 2003-07-16 | | Release date: | 2004-07-16 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.3 Å) | | Cite: | Structure of the core region of the soybean beta-conglycinin alpha' subunit.
Acta Crystallogr.,Sect.D, 60, 2004
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1UIJ
 | | Crystal Structure Of Soybean beta-Conglycinin Beta Homotrimer (I122M/K124W) | | Descriptor: | beta subunit of beta conglycinin | | Authors: | Maruyama, N, Maruyama, Y, Tsuruki, T, Okuda, E, Yoshikawa, M, Utsumi, S. | | Deposit date: | 2003-07-16 | | Release date: | 2004-07-16 | | Last modified: | 2023-12-27 | | Method: | X-RAY DIFFRACTION (2.5 Å) | | Cite: | Creation of soybean beta-conglycinin beta with strong phagocytosis-stimulating activity
BIOCHIM.BIOPHYS.ACTA, 1648, 2003
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1V3H
 | | The roles of Glu186 and Glu380 in the catalytic reaction of soybean beta-amylase | | Descriptor: | Beta-amylase, SULFATE ION, alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose | | Authors: | Kang, Y.N, Adachi, M, Utsumi, S, Mikami, B. | | Deposit date: | 2003-11-02 | | Release date: | 2004-06-22 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (1.6 Å) | | Cite: | The Roles of Glu186 and Glu380 in the Catalytic Reaction of Soybean beta-Amylase.
J.Mol.Biol., 339, 2004
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1UKP
 | | Crystal structure of soybean beta-amylase mutant substituted at surface region | | Descriptor: | Beta-amylase, SULFATE ION | | Authors: | Kang, Y.N, Adachi, M, Mikami, B, Utsumi, S. | | Deposit date: | 2003-08-31 | | Release date: | 2004-02-10 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues
Protein Eng., 16, 2003
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1UKO
 | | Crystal structure of soybean beta-amylase mutant substituted at surface region | | Descriptor: | Beta-amylase, SULFATE ION | | Authors: | Kang, Y.N, Adachi, M, Mikami, B, Utsumi, S. | | Deposit date: | 2003-08-30 | | Release date: | 2004-02-10 | | Last modified: | 2023-10-25 | | Method: | X-RAY DIFFRACTION (2.1 Å) | | Cite: | Change in the crystal packing of soybean beta-amylase mutants substituted at a few surface amino acid residues
Protein Eng., 16, 2003
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1YGE
 | | LIPOXYGENASE-1 (SOYBEAN) AT 100K | | Descriptor: | FE (III) ION, LIPOXYGENASE-1 | | Authors: | Minor, W, Steczko, J, Stec, B, Otwinowski, Z, Bolin, J.T, Walter, R, Axelrod, B. | | Deposit date: | 1996-06-04 | | Release date: | 1997-07-23 | | Last modified: | 2024-02-14 | | Method: | X-RAY DIFFRACTION (1.4 Å) | | Cite: | Crystal structure of soybean lipoxygenase L-1 at 1.4 A resolution.
Biochemistry, 35, 1996
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