PDB: 323 resultsInfo pagesStatus searchChemie searchBIRD

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9CJA	Formerly degenerate seventh zinc finger domain from transcription factor ZNF711 rehabilitated by experimental NMR structure Descriptor: ZINC ION, Zinc finger protein 711 Authors: Rua, A.J, Alexandrescu, A.T. Deposit date: 2024-07-05 Release date: 2024-07-17 Last modified: 2024-10-09 Method: SOLUTION NMR Cite: Formerly degenerate seventh zinc finger domain from transcription factor ZNF711 rehabilitated by experimental NMR structure. Protein Sci., 33, 2024
9AZI	NMR solution structure of cell-permeant miniature protein ZF5.3 Descriptor: Designed Zinc finger protein 5.3, ZINC ION Authors: Giudice, J.A, Kelly, M, Schepartz, A. Deposit date: 2024-03-11 Release date: 2024-05-01 Method: SOLUTION NMR Cite: Structural and mechanistic basis for efficient endosomal escape by designed mini-proteins To be published
1UBD	CO-CRYSTAL STRUCTURE OF HUMAN YY1 ZINC FINGER DOMAIN BOUND TO THE ADENO-ASSOCIATED VIRUS P5 INITIATOR ELEMENT Descriptor: DNA (5'-D(*AP*GP*GP*GP*TP*CP*TP*CP*CP*AP*TP*TP*TP*TP*GP*AP*A P*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*TP*TP*CP*AP*AP*AP*AP*TP*GP*GP*AP*GP*AP*C P*CP*CP*T)-3'), PROTEIN (YY1 ZINC FINGER DOMAIN), ... Authors: Houbaviy, H.B, Usheva, A, Shenk, T, Burley, S.K. Deposit date: 1996-10-04 Release date: 1996-12-23 Last modified: 2024-02-14 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Cocrystal structure of YY1 bound to the adeno-associated virus P5 initiator. Proc.Natl.Acad.Sci.USA, 93, 1996
8YMZ	Structure of ZBTB43 in complex with CACA containing B-form DNA Descriptor: DNA (5'-D(*AP*AP*GP*TP*GP*TP*GP*TP*AP*TP*GP*TP*GP*TP*G)-3'), DNA (5'-D(*TP*CP*AP*CP*AP*CP*AP*TP*AP*CP*AP*CP*AP*CP*T)-3'), ZINC ION, ... Authors: Li, X, Yang, Y. Deposit date: 2024-03-10 Release date: 2024-10-09 Method: X-RAY DIFFRACTION (2.95 Å) Cite: Structural insights into the recognition of purine-pyrimidine dinucleotide repeats by zinc finger protein ZBTB43. Febs J., 2024
1U85	ARG326-TRP mutant of the third zinc finger of BKLF Descriptor: Kruppel-like factor 3, ZINC ION Authors: Cram, E.D, Mackay, J.P, Matthews, J.M. Deposit date: 2004-08-05 Release date: 2005-08-23 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structures of tryptophan-containing CCHH zinc finger mutants To be Published
1U86	321-TW-322 insertion mutant of the third zinc finger of BKLF Descriptor: Kruppel-like factor 3, ZINC ION Authors: Cram, E.D, Mackay, J.P, Matthews, J.M. Deposit date: 2004-08-05 Release date: 2005-08-23 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structures of tryptophan-containing CCHH zinc finger mutants To be Published
4X9J	EGR-1 with Doubly Methylated DNA Descriptor: DNA (5'-D(*AP*GP*(5CM)P*GP*TP*GP*GP*GP*(5CM)P*GP*T)-3'), DNA (5'-D(*TP*AP*(5CM)P*GP*CP*CP*CP*AP*(5CM)P*GP*C)-3'), Early growth response protein 1, ... Authors: White, M.A, Zandarashvili, L, Iwahara, J. Deposit date: 2014-12-11 Release date: 2015-05-13 Last modified: 2023-09-27 Method: X-RAY DIFFRACTION (1.412 Å) Cite: Structural impact of complete CpG methylation within target DNA on specific complex formation of the inducible transcription factor Egr-1. Febs Lett., 589, 2015
8JQ1	Solution NMR Structure of zinc fingers 1-2 (fragment 257-320) from human insulinoma-associated protein 1(INSM1) Descriptor: Insulinoma-associated protein 1, ZINC ION Authors: He, X.L, Yang, Y.H. Deposit date: 2023-06-13 Release date: 2024-06-19 Method: SOLUTION NMR Cite: Solution NMR Structure of zinc fingers 1-2 (fragment 257-320) from human insulinoma-associated protein 1(INSM1) To Be Published
8JPY	Solution NMR Structure of Zinc-fingers 1 and 2 (fragment 257-320) from human Insulinoma-associated protein 1(INSM1) Descriptor: Insulinoma-associated protein 1, ZINC ION Authors: He, X.L, Yang, Y.H. Deposit date: 2023-06-13 Release date: 2024-06-19 Method: SOLUTION NMR Cite: Solution NMR Structure of Zinc-fingers 1 and 2 (fragment 257-320) from human Insulinoma-associated protein 1(INSM1) To Be Published
8K81	Solution NMR Structure of ZF3 (fragment 346-396) from human Insulinoma-associated protein 1(INSM1) Descriptor: Insulinoma-associated protein 1, ZINC ION Authors: He, X.L, Yang, Y.H. Deposit date: 2023-07-28 Release date: 2024-07-31 Method: SOLUTION NMR Cite: Solution NMR Structure of ZF3 (fragment 346-396) from human Insulinoma-associated protein 1(INSM1) To Be Published
4ZNF	HIGH-RESOLUTION THREE-DIMENSIONAL STRUCTURE OF A SINGLE ZINC FINGER FROM A HUMAN ENHANCER BINDING PROTEIN IN SOLUTION Descriptor: ZINC FINGER, ZINC ION Authors: Gronenborn, A.M, Clore, G.M, Omichinski, J.G. Deposit date: 1990-07-09 Release date: 1992-01-15 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: High-resolution three-dimensional structure of a single zinc finger from a human enhancer binding protein in solution. Biochemistry, 29, 1990
5EH2	Human PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA Sequence III Descriptor: DNA (5'-D(*AP*CP*AP*CP*GP*TP*GP*GP*CP*TP*AP*GP*GP*GP*AP*GP*GP*CP*CP*TP*C)-3'), DNA (5'-D(*TP*GP*AP*GP*GP*CP*CP*TP*CP*CP*CP*TP*AP*GP*CP*CP*AP*CP*GP*TP*G)-3'), Histone-lysine N-methyltransferase PRDM9, ... Authors: Patel, A, Horton, J.R, Wilson, G.G, Zhang, X, Cheng, X. Deposit date: 2015-10-27 Release date: 2016-02-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.05 Å) Cite: Structural basis for human PRDM9 action at recombination hot spots. Genes Dev., 30, 2016
5EI9	Human PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA Sequence I Descriptor: DNA (5'-D(*AP*TP*CP*CP*AP*CP*GP*TP*GP*GP*CP*TP*AP*GP*GP*GP*AP*GP*GP*CP*C)-3'), DNA (5'-D(*TP*GP*GP*CP*CP*TP*CP*CP*CP*TP*AP*GP*CP*CP*AP*CP*GP*TP*GP*GP*A)-3'), Histone-lysine N-methyltransferase PRDM9, ... Authors: Patel, A, Horton, J.R, Wilson, G.G, Zhang, X, Cheng, X. Deposit date: 2015-10-29 Release date: 2016-02-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.921 Å) Cite: Structural basis for human PRDM9 action at recombination hot spots. Genes Dev., 30, 2016
5EGB	Human PRDM9 allele-A ZnF Domain with Associated Recombination Hotspot DNA Sequence II Descriptor: DNA (5'-D(*AP*CP*CP*AP*CP*GP*TP*GP*GP*CP*TP*AP*GP*GP*GP*AP*GP*GP*CP*CP*T)-3'), DNA (5'-D(*TP*AP*GP*GP*CP*CP*TP*CP*CP*CP*TP*AP*GP*CP*CP*AP*CP*GP*TP*GP*G)-3'), Histone-lysine N-methyltransferase PRDM9, ... Authors: Patel, A, Horton, J.R, Wilson, G.G, Zhang, X, Cheng, X. Deposit date: 2015-10-26 Release date: 2016-02-17 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (1.977 Å) Cite: Structural basis for human PRDM9 action at recombination hot spots. Genes Dev., 30, 2016
5A7U	Single-particle cryo-EM of co-translational folded adr1 domain inside the E. coli ribosome exit tunnel. Descriptor: REGULATORY PROTEIN ADR1, ZINC ION Authors: Nilsson, O.B, Hedman, R, Marino, J, Wickles, S, Bischoff, L, Johansson, M, Muller-Lucks, A, Trovato, F, Puglisi, J.D, O'Brien, E, Beckmann, R, von Heijne, G. Deposit date: 2015-07-10 Release date: 2015-09-16 Last modified: 2024-05-08 Method: ELECTRON MICROSCOPY (4.8 Å) Cite: Cotranslational Protein Folding Inside the Ribosome Exit Tunnel. Cell Rep., 12, 2015
1G2D	STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (CLONE #2) Descriptor: 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3', TATA BOX ZINC FINGER PROTEIN, ... Authors: Wolfe, S.A, Grant, R.A, Elrod-Erickson, M, Pabo, C.O. Deposit date: 2000-10-18 Release date: 2001-09-07 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes. Structure, 9, 2001
1G2F	STRUCTURE OF A CYS2HIS2 ZINC FINGER/TATA BOX COMPLEX (TATAZF;CLONE #6) Descriptor: 5'-D(*GP*AP*CP*GP*CP*TP*AP*TP*AP*AP*AP*AP*GP*GP*AP*G)-3', 5'-D(*TP*CP*CP*TP*TP*TP*TP*AP*TP*AP*GP*CP*GP*TP*CP*C)-3', TATA BOX ZINC FINGER PROTEIN, ... Authors: Wolfe, S.A, Grant, R.A, Elrod-Erickson, M, Pabo, C.O. Deposit date: 2000-10-18 Release date: 2001-09-07 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2 Å) Cite: Beyond the "recognition code": structures of two Cys2His2 zinc finger/TATA box complexes. Structure, 9, 2001
1NCS	NMR STUDY OF SWI5 ZINC FINGER DOMAIN 1 Descriptor: TRANSCRIPTIONAL FACTOR SWI5, ZINC ION Authors: Dutnall, R.N, Neuhaus, D, Rhodes, D. Deposit date: 1996-02-26 Release date: 1996-06-10 Last modified: 2024-05-22 Method: SOLUTION NMR Cite: The solution structure of the first zinc finger domain of SWI5: a novel structural extension to a common fold. Structure, 4, 1996
1JK1	Zif268 D20A Mutant Bound to WT DNA Site Descriptor: 5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*GP*G)-3', 5'-D(*TP*CP*CP*GP*CP*CP*CP*AP*CP*GP*C)-3', ZIF268, ... Authors: Miller, J.C, Pabo, C.O. Deposit date: 2001-07-11 Release date: 2001-10-19 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition. J.Mol.Biol., 313, 2001
1P47	Crystal Structure of tandem Zif268 molecules complexed to DNA Descriptor: 5'-D(*CP*AP*CP*GP*CP*CP*CP*AP*CP*GP*CP*CP*GP*CP*CP*CP*AP*CP*GP*CP*CP*A)-3', 5'-D(*GP*TP*GP*GP*CP*GP*TP*GP*GP*GP*CP*GP*GP*CP*GP*TP*GP*GP*GP*CP*GP*T)-3', Early growth response protein 1, ... Authors: Peisach, E, Pabo, C.O. Deposit date: 2003-04-21 Release date: 2003-06-24 Last modified: 2023-08-16 Method: X-RAY DIFFRACTION (2.2 Å) Cite: Constraints for Zinc Finger Linker Design as Inferred from X-ray Crystal Structure of Tandem Zif268-DNA Complexes J.Mol.Biol., 330, 2003
1P7A	Solution Structure of the Third Zinc Finger from BKLF Descriptor: Kruppel-like factor 3, ZINC ION Authors: Simpson, R.J.Y, Cram, E.D, Czolij, R, Matthews, J.M, Crossley, M, Mackay, J.P. Deposit date: 2003-04-30 Release date: 2003-12-30 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: CCHX zinc finger derivatives retain the ability to bind Zn(II) and mediate protein-DNA interactions. J.Biol.Chem., 278, 2003
1JK2	Zif268 D20A mutant bound to the GCT DNA site Descriptor: 5'-D(*AP*GP*CP*GP*TP*GP*GP*GP*CP*TP*G)-3', 5'-D(*TP*CP*AP*GP*CP*CP*CP*AP*CP*GP*C)-3', ZIF268, ... Authors: Miller, J.C, Pabo, C.O. Deposit date: 2001-07-11 Release date: 2001-10-19 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Rearrangement of side-chains in a Zif268 mutant highlights the complexities of zinc finger-DNA recognition. J.Mol.Biol., 313, 2001
2D9H	Solution structure of the forth and fifth zf-C2H2 domains of zinc finger protein 692 Descriptor: ZINC ION, Zinc finger protein 692 Authors: Zhang, H.P, Nagasima, T, Hayashi, F, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2005-12-09 Release date: 2006-06-09 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the forth and fifth zf-C2H2 domains of zinc finger protein 692 to be published
6U9Q	Crystal Structure Analysis of DNA-BCL11A Znf domain complex Descriptor: B-cell lymphoma/leukemia 11A, DNA3, DNA5, ... Authors: Seo, H.-S, Dhe-Paganon, S. Deposit date: 2019-09-09 Release date: 2020-09-16 Last modified: 2024-10-23 Method: X-RAY DIFFRACTION (1.83 Å) Cite: Structural insights into the DNA-binding mechanism of BCL11A: The integral role of ZnF6 Structure, 2024
2DMD	Solution structure of the N-terminal C2H2 type zinc-binding domain of the Zinc finger protein 64, isoforms 1 and 2 Descriptor: ZINC ION, Zinc finger protein 64, isoforms 1 and 2 Authors: Yoneyama, M, Tochio, N, Koshiba, S, Inoue, M, Kigawa, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2006-04-21 Release date: 2006-10-21 Last modified: 2024-05-29 Method: SOLUTION NMR Cite: Solution structure of the N-terminal C2H2 type zinc-binding domain of the Zinc finger protein 64, isoforms 1 and 2 To be Published

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