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4V7J
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BU of 4v7j by Molmil
Structure of RelE nuclease bound to the 70S ribosome (precleavage state)
Descriptor: 30S ribosomal protein S10, 30S ribosomal protein S11, 30S ribosomal protein S12, ...
Authors:Neubauer, C, Gao, Y.-G, Andersen, K.R, Dunham, C.M, Kelley, A.C, Hentschel, J, Gerdes, K, Ramakrishnan, V, Brodersen, D.E.
Deposit date:2009-11-02
Release date:2014-07-09
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:The structural basis for mRNA recognition and cleavage by the ribosome-dependent endonuclease RelE.
Cell(Cambridge,Mass.), 139, 2009
4V9B
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BU of 4v9b by Molmil
Crystal Structure of the 70S ribosome with tigecycline.
Descriptor: 16S ribosomal RNA, 23S ribosomal RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Jenner, L, Yusupov, M, Yusupova, G.
Deposit date:2012-07-18
Release date:2014-07-09
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (3.1 Å)
Cite:Structural basis for potent inhibitory activity of the antibiotic tigecycline during protein synthesis.
Proc.Natl.Acad.Sci.USA, 110, 2013
4V84
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BU of 4v84 by Molmil
Crystal structure of a complex containing domain 3 of CrPV IGR IRES RNA bound to the 70S ribosome.
Descriptor: 23S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ...
Authors:Zhu, J, Korostelev, A, Costantino, D, Noller, H.F, Kieft, J.S.
Deposit date:2010-12-13
Release date:2014-07-09
Last modified:2019-07-17
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:Crystal structures of complexes containing domains from two viral internal ribosome entry site (IRES) RNAs bound to the 70S ribosome.
Proc.Natl.Acad.Sci.USA, 108, 2011
1D4R
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BU of 1d4r by Molmil
29-mer fragment of human srp rna helix 6
Descriptor: 29-MER OF MODIFIED SRP RNA HELIX 6, MAGNESIUM ION
Authors:Wild, K, Weichenrieder, O, Leonard, G.A, Cusack, S.
Deposit date:1999-10-05
Release date:1999-12-02
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The 2 A structure of helix 6 of the human signal recognition particle RNA
Structure Fold.Des., 7, 1999
1DLM
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BU of 1dlm by Molmil
STRUCTURE OF CATECHOL 1,2-DIOXYGENASE FROM ACINETOBACTER CALCOACETICUS NATIVE DATA
Descriptor: CATECHOL 1,2-DIOXYGENASE, FE (III) ION, [1-PENTADECANOYL-2-DECANOYL-GLYCEROL-3-YL]PHOSPHONYL CHOLINE
Authors:Vetting, M.W, Ohlendorf, D.H.
Deposit date:1999-12-11
Release date:2000-05-23
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (2 Å)
Cite:The 1.8 A crystal structure of catechol 1,2-dioxygenase reveals a novel hydrophobic helical zipper as a subunit linker.
Structure Fold.Des., 8, 2000
7BAI
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BU of 7bai by Molmil
Structure of RIG-I CTD (I875A) bound to p-RNA
Descriptor: Antiviral innate immune response receptor RIG-I, RNA (5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3'), ZINC ION
Authors:Anand, K, Hagelueken, G, Fusshoeller, D, Geyer, M.
Deposit date:2020-12-15
Release date:2022-01-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (3.4 Å)
Cite:A conserved isoleucine in the RNA sensor RIG-I controls immune tolerance to mitochondrial RNA
To Be Published
4MQ7
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BU of 4mq7 by Molmil
Structure of human CD1d-sulfatide
Descriptor: (15Z)-N-((1S,2R,3E)-2-HYDROXY-1-{[(3-O-SULFO-BETA-D-GALACTOPYRANOSYL)OXY]METHYL}HEPTADEC-3-ENYL)TETRACOS-15-ENAMIDE, 2-acetamido-2-deoxy-beta-D-glucopyranose, Antigen-presenting glycoprotein CD1d, ...
Authors:Luoma, A.M, Adams, E.J.
Deposit date:2013-09-15
Release date:2013-12-18
Last modified:2023-09-20
Method:X-RAY DIFFRACTION (2.6032 Å)
Cite:Crystal Structure of V delta 1 T Cell Receptor in Complex with CD1d-Sulfatide Shows MHC-like Recognition of a Self-Lipid by Human gamma delta T Cells.
Immunity, 39, 2013
3NCU
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BU of 3ncu by Molmil
Structural and functional insights into pattern recognition by the innate immune receptor RIG-I
Descriptor: 5'-R(*(GDP)P*AP*CP*GP*CP*UP*AP*GP*CP*GP*UP*C)-3', RIG-I, ZINC ION
Authors:Sheng, G, Li, H.
Deposit date:2010-06-05
Release date:2010-06-30
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:Structural and functional insights into 5'-ppp RNA pattern recognition by the innate immune receptor RIG-I.
Nat.Struct.Mol.Biol., 17, 2010
3OXJ
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BU of 3oxj by Molmil
crystal structure of glycine riboswitch, soaked in Ba2+
Descriptor: BARIUM ION, GLYCINE, MAGNESIUM ION, ...
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-21
Release date:2010-12-29
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.2 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
5AOX
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BU of 5aox by Molmil
Human Alu RNA retrotransposition complex in the ribosome-stalling conformation
Descriptor: ACETATE ION, ALU JO CONSENSUS RNA, DI(HYDROXYETHYL)ETHER, ...
Authors:Ahl, V, Weichenrieder, O.
Deposit date:2015-09-12
Release date:2015-11-11
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Retrotransposition and Crystal Structure of an Alu Rnp in the Ribosome-Stalling Conformation.
Mol.Cell, 60, 2015
3ZD4
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BU of 3zd4 by Molmil
Full-Length Hammerhead Ribozyme with G12A substitution at the general base position
Descriptor: HAMMERHEAD RIBOZYME, ENZYME STRAND, SUBSTRATE STRAND
Authors:Scott, W.G, Schultz, E.
Deposit date:2012-11-24
Release date:2012-12-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Structural and Catalytic Effects of an Invariant Purine Substitution in the Hammerhead Ribozyme: Implications for the Mechanism of Acid-Base Catalysis.
Acta Crystallogr.,Sect.D, 70, 2014
3ZP8
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BU of 3zp8 by Molmil
HIGH-RESOLUTION FULL-LENGTH HAMMERHEAD RIBOZYME
Descriptor: HAMMERHEAD RIBOZYME, ENZYME STRAND, SUBSTRATE STRAND, ...
Authors:Anderson, M, Schultz, E, Martick, M, Scott, W.G.
Deposit date:2013-02-26
Release date:2013-03-06
Last modified:2023-12-20
Method:X-RAY DIFFRACTION (1.55 Å)
Cite:Active-Site Monovalent Cations Revealed in a 1.55 A Resolution Hammerhead Ribozyme Structure
J.Mol.Biol., 425, 2013
3ZD5
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BU of 3zd5 by Molmil
THE 2.2 A STRUCTURE OF A FULL-LENGTH CATALYTICALLY ACTIVE HAMMERHEAD RIBOZYME
Descriptor: HAMMERHEAD RIBOZYME, ENZYME STRAND, SUBSTRATE STRAND
Authors:Martick, M, Scott, W.G.
Deposit date:2012-11-24
Release date:2012-12-12
Last modified:2024-05-08
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Tertiary contacts distant from the active site prime a ribozyme for catalysis.
Cell, 126, 2006
3DIY
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BU of 3diy by Molmil
Crystallization of the Thermotoga maritima lysine riboswitch bound to lysine, Mn2+ soak
Descriptor: LYSINE, MANGANESE (II) ION, POTASSIUM ION, ...
Authors:Serganov, A.A.
Deposit date:2008-06-21
Release date:2008-09-16
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.71 Å)
Cite:Structural insights into amino acid binding and gene control by a lysine riboswitch.
Nature, 455, 2008
8HZD
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BU of 8hzd by Molmil
A new fluorescent RNA aptamer bound with N618
Descriptor: 4-[(~{E})-2-[(4~{Z})-4-[[3,5-bis(fluoranyl)-4-oxidanyl-phenyl]methylidene]-1-methyl-5-oxidanylidene-imidazol-2-yl]ethenyl]benzenecarbonitrile, MAGNESIUM ION, RNA (36-MER)
Authors:Song, Q.Q, Ren, A.M.
Deposit date:2023-01-09
Release date:2024-06-19
Method:X-RAY DIFFRACTION (1.87 Å)
Cite:Structural basis of a small monomeric Clivia fluorogenic RNA with a large Stokes shift.
Nat.Chem.Biol., 2024
7EOH
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BU of 7eoh by Molmil
Crystal structure of the Pepper aptamer in complex with HBC
Descriptor: 4-[(~{Z})-1-cyano-2-[4-[2-hydroxyethyl(methyl)amino]phenyl]ethenyl]benzenecarbonitrile, MAGNESIUM ION, Pepper (49-MER)
Authors:Huang, K.Y, Ren, A.M.
Deposit date:2021-04-22
Release date:2021-11-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.637 Å)
Cite:Structure-based investigation of fluorogenic Pepper aptamer.
Nat.Chem.Biol., 17, 2021
7EOJ
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BU of 7eoj by Molmil
Crystal structure of the Pepper aptamer in complex with HBC, cesium soak
Descriptor: 4-[(~{Z})-1-cyano-2-[4-[2-hydroxyethyl(methyl)amino]phenyl]ethenyl]benzenecarbonitrile, CESIUM ION, MAGNESIUM ION, ...
Authors:Huang, K.Y, Ren, A.M.
Deposit date:2021-04-22
Release date:2021-11-24
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.77 Å)
Cite:Structure-based investigation of fluorogenic Pepper aptamer.
Nat.Chem.Biol., 17, 2021
6XN9
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BU of 6xn9 by Molmil
Solution NMR structure of recifin, a cysteine-rich tyrosyl-DNA Phosphodiesterase I modulatory peptide from the marine sponge Axinella sp.
Descriptor: Recifin modulatory peptide
Authors:Schroeder, C.I, Rosengren, K.J, O'Keefe, B.R.
Deposit date:2020-07-02
Release date:2021-02-10
Method:SOLUTION NMR
Cite:Recifin A, Initial Example of the Tyr-Lock Peptide Structural Family, Is a Selective Allosteric Inhibitor of Tyrosyl-DNA Phosphodiesterase I.
J.Am.Chem.Soc., 142, 2020
8XZK
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BU of 8xzk by Molmil
Crystal structure of folE riboswitch
Descriptor: RNA (53-MER)
Authors:Li, C.Y, Ren, A.M.
Deposit date:2024-01-21
Release date:2024-07-24
Last modified:2024-08-21
Method:X-RAY DIFFRACTION (2.58 Å)
Cite:Structure-based characterization and compound identification of the wild-type THF class-II riboswitch.
Nucleic Acids Res., 52, 2024
1RYD
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BU of 1ryd by Molmil
Crystal Structure of Glucose-Fructose Oxidoreductase from Zymomonas mobilis
Descriptor: ACETATE ION, BETA-MERCAPTOETHANOL, NADPH DIHYDRO-NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, ...
Authors:Kim, Y, Arora, M, Straza, M, Joachimiak, A.
Deposit date:2003-12-22
Release date:2005-02-15
Last modified:2023-08-23
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of Glucose-Fructose Oxidoreductase from Zymomonas mobilis
To be Published
3OWI
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BU of 3owi by Molmil
Crystal structure of the glycine riboswitch bound to glycine
Descriptor: Domain II of glycine riboswitch, GLYCINE, MAGNESIUM ION
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-19
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.845 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OXD
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BU of 3oxd by Molmil
Crystal structure of glycine riboswitch with two mutations
Descriptor: MAGNESIUM ION, domain II of glycine riboswitch
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-21
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.999 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OXE
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BU of 3oxe by Molmil
crystal structure of glycine riboswitch, Mn2+ soaked
Descriptor: GLYCINE, MAGNESIUM ION, MANGANESE (II) ION, ...
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-21
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.899 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OWZ
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BU of 3owz by Molmil
Crystal structure of glycine riboswitch, soaked in Iridium
Descriptor: Domain II of glycine riboswitch, GLYCINE, IRIDIUM HEXAMMINE ION, ...
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-20
Release date:2010-12-29
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.949 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010
3OXB
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BU of 3oxb by Molmil
Crystal structure of glycine riboswitch with single mutation
Descriptor: Domain II of glycine riboswitch, MAGNESIUM ION
Authors:Huang, L, Serganov, A, Patel, D.J.
Deposit date:2010-09-21
Release date:2010-12-29
Last modified:2023-09-06
Method:X-RAY DIFFRACTION (2.947 Å)
Cite:Structural insights into ligand recognition by a sensing domain of the cooperative glycine riboswitch.
Mol.Cell, 40, 2010

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