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9JQL
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BU of 9jql by Molmil
The C-terminal structure of N6-methyladenosine deaminase
Descriptor: Putative adenine deaminase YerA
Authors:Xie, W, Jia, Q.
Deposit date:2024-09-27
Release date:2025-06-11
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:The C-terminal structure of the N6-methyladenosine deaminase YerA and its role in deamination.
Biochem.J., 482, 2025
3D5Y
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BU of 3d5y by Molmil
High resolution crystal structure of 1,5-alpha-arabinanase catalytic mutant (AbnBE201A)
Descriptor: CALCIUM ION, Intracellular arabinanase
Authors:Alhassid, A, Ben David, A, Shoham, Y, Shoham, G.
Deposit date:2008-05-18
Release date:2009-04-21
Last modified:2024-11-13
Method:X-RAY DIFFRACTION (1.22 Å)
Cite:Crystal structure of an inverting GH 43 1,5-alpha-L-arabinanase from Geobacillus stearothermophilus complexed with its substrate
Biochem.J., 422, 2009
3CV1
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BU of 3cv1 by Molmil
Atomic Resolution Structures of Escherichia coli and Bacillis anthracis Malate Synthase A: Comparison with Isoform G and Implications for Structure Based Drug Design
Descriptor: ACETATE ION, CALCIUM ION, GLYCEROL, ...
Authors:Lohman, J.R.
Deposit date:2008-04-17
Release date:2008-11-11
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Atomic resolution structures of Escherichia coli and Bacillus anthracis malate synthase A: comparison with isoform G and implications for structure-based drug discovery
Protein Sci., 17, 2008
9JLY
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BU of 9jly by Molmil
NADP-dependent oxidoreductase complexed with NADP
Descriptor: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADP-dependent oxidoreductase
Authors:Li, Y, Zhu, D, Xie, X, Li, F, Lu, M.
Deposit date:2024-09-19
Release date:2025-06-18
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Structural Basis for Medium-Chain Dehydrogenase/Reductase-Catalyzed Reductive Cyclization in Polycyclic Tetramate Macrolactam Biosynthesis.
J.Am.Chem.Soc., 147, 2025
1KFG
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BU of 1kfg by Molmil
The X-ray Crystal Structure of Cel9G from Clostridium cellulolyticum complexed with a Thio-Oligosaccharide Inhibitor
Descriptor: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, 4-thio-beta-D-glucopyranose-(1-4)-beta-D-glucopyranose-(1-4)-4-thio-beta-D-glucopyranose-(1-4)-1-thio-beta-D-glucopyranose, CALCIUM ION, ...
Authors:Mandelman, D, Belaich, A, Belaich, J.-P, Driguez, H, Haser, R.
Deposit date:2001-11-20
Release date:2003-07-15
Last modified:2023-08-16
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The X-ray crystal structure of the multidomain endoglucanase Cel9G from Clostridium cellulolyticum complexed with natural and synthetic cello-olligosaccharides
J.Bacteriol., 185, 2003
3CVY
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BU of 3cvy by Molmil
Drosophila melanogaster (6-4) photolyase bound to repaired ds DNA
Descriptor: DNA (5'-D(*DAP*DCP*DAP*DGP*DCP*DGP*DGP*DTP*DTP*DGP*DCP*DAP*DGP*DGP*DT)-3'), DNA (5'-D(*DTP*DAP*DCP*DCP*DTP*DGP*DCP*DAP*DAP*DCP*DCP*DGP*DCP*DTP*DG)-3'), FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Maul, M.J, Barends, T.R.M, Glas, A.F, Cryle, M.J, Schlichting, I, Carell, T.
Deposit date:2008-04-20
Release date:2008-11-04
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Crystal structure and mechanism of a DNA (6-4) photolyase.
Angew.Chem.Int.Ed.Engl., 47, 2008
9JJ4
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NADP-dependent oxidoreductase complexed with NADP and substrate 1a
Descriptor: (1Z,3E,5S,7S,8R,9S,10S,11R,13R,15R,16S,18Z,25S)-11-ethyl-2,7-dihydroxy-10-methyl-21,26-diazapentacyclo[23.2.1.09,13.08,15.05,16]octacosa-1(2),3,18-triene-20,27,28-trione, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADP-dependent oxidoreductase
Authors:Li, Y, Zhu, D, Xie, X, Li, F, Lu, M.
Deposit date:2024-09-12
Release date:2025-06-18
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural Basis for Medium-Chain Dehydrogenase/Reductase-Catalyzed Reductive Cyclization in Polycyclic Tetramate Macrolactam Biosynthesis.
J.Am.Chem.Soc., 147, 2025
3D6P
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BU of 3d6p by Molmil
RNase A- 5'-Deoxy-5'-N-morpholinouridine complex
Descriptor: 1-(5-deoxy-5-morpholin-4-yl-alpha-L-arabinofuranosyl)pyrimidine-2,4(1H,3H)-dione, Ribonuclease pancreatic
Authors:Leonidas, D.D, Zogrpahos, S.E, Oikonomakos, N.G.
Deposit date:2008-05-20
Release date:2009-02-10
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:Morpholino, piperidino, and pyrrolidino derivatives of pyrimidine nucleosides as inhibitors of ribonuclease A: synthesis, biochemical, and crystallographic evaluation.
J.Med.Chem., 52, 2009
3D6Y
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BU of 3d6y by Molmil
Crystal structure of R275E mutant of BMRR bound to DNA and berberine
Descriptor: BERBERINE, BMR promoter DNA, GLYCEROL, ...
Authors:Newberry, K.J, Brennan, R.G.
Deposit date:2008-05-20
Release date:2008-08-26
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structures of BmrR-Drug Complexes Reveal a Rigid Multidrug Binding Pocket and Transcription Activation through Tyrosine Expulsion
J.Biol.Chem., 283, 2008
9JLK
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BU of 9jlk by Molmil
NADP-dependent oxidoreductase
Descriptor: NADP-dependent oxidoreductase
Authors:Li, Y, Zhu, D, Xie, X, Li, F, Lu, M.
Deposit date:2024-09-19
Release date:2025-06-18
Method:X-RAY DIFFRACTION (2.33 Å)
Cite:Structural Basis for Medium-Chain Dehydrogenase/Reductase-Catalyzed Reductive Cyclization in Polycyclic Tetramate Macrolactam Biosynthesis.
J.Am.Chem.Soc., 147, 2025
3CYV
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BU of 3cyv by Molmil
Crystal structure of uroporphyrinogen decarboxylase from Shigella flexineri: new insights into its catalytic mechanism
Descriptor: Uroporphyrinogen decarboxylase
Authors:Liu, H, Zhou, H, Bi, R.
Deposit date:2008-04-26
Release date:2009-04-28
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structure of uroporphyrinogen III decarboxylase from Shigella flexineri: new insights into its catalytic mechanism
To be Published
9JM9
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BU of 9jm9 by Molmil
NADP-dependent oxidoreductase complexed with NADP and substrate 3
Descriptor: (1Z,3E,5E,7R,8S,10R,11R,12S,15S,16E,18E,25S)-11-ethyl-2-hydroxy-10-methyl-21,26-diazatetracyclo[23.2.1.07,15.08,12]octacosa-1,3,5,13,16,18-hexaene-20,27,28-trione, NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE, NADP-dependent oxidoreductase
Authors:Li, Y, Zhu, D, Xie, X, Li, F, Lu, M.
Deposit date:2024-09-20
Release date:2025-06-18
Method:X-RAY DIFFRACTION (3.38 Å)
Cite:Structural Basis for Medium-Chain Dehydrogenase/Reductase-Catalyzed Reductive Cyclization in Polycyclic Tetramate Macrolactam Biosynthesis.
J.Am.Chem.Soc., 147, 2025
3CZ6
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BU of 3cz6 by Molmil
Crystal Structure of the Rap1 C-terminus
Descriptor: (4S)-2-METHYL-2,4-PENTANEDIOL, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, DNA-binding protein RAP1
Authors:Feeser, E.A, Wolberger, C.
Deposit date:2008-04-28
Release date:2008-05-20
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and functional studies of the Rap1 C-terminus reveal novel separation-of-function mutants.
J.Mol.Biol., 380, 2008
3CZF
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BU of 3czf by Molmil
Crystal structure of HLA-B*2709 complexed with the glucagon receptor (GR) peptide (residues 412-420)
Descriptor: BETA-2-MICROGLOBULIN, GLUCAGON RECEPTOR PEPTIDE, GLYCEROL, ...
Authors:Loll, B, Fiorillo, M.T, Rueckert, C, Saenger, W, Sorrentino, R, Ziegler, A, Uchanska-Ziegler, B.
Deposit date:2008-04-29
Release date:2009-04-07
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.2 Å)
Cite:Conformational Plasticity of HLA-B27 Molecules Correlates Inversely With Efficiency of Negative T Cell Selection.
Front Immunol, 11, 2020
3D7N
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BU of 3d7n by Molmil
The crystal structure of the flavodoxin, WrbA-like protein from Agrobacterium tumefaciens
Descriptor: Flavodoxin, WrbA-like protein
Authors:Zhang, R, Xu, X, Gu, J, Savchenko, A, Edwards, A, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-05-21
Release date:2008-07-15
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:The crystal structure of the flavodoxin, WrbA-like protein from Agrobacterium tumefaciens
To be Published, 2008
3D7U
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BU of 3d7u by Molmil
Structural basis for the recognition of c-Src by its inactivator Csk
Descriptor: Proto-oncogene tyrosine-protein kinase Src, Tyrosine-protein kinase CSK
Authors:Levinson, N.M, Seeliger, M.A, Cole, P.A, Kuriyan, J.
Deposit date:2008-05-21
Release date:2008-08-05
Last modified:2024-02-21
Method:X-RAY DIFFRACTION (4.111 Å)
Cite:Structural basis for the recognition of c-Src by its inactivator Csk.
Cell(Cambridge,Mass.), 134, 2008
9JQP
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BU of 9jqp by Molmil
Cryo-EM structure of the HMBPP-primed BTN3A1-BTN3A2-BTN2A1 in complex with agonist antibody TH001
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, BTN3A agonist antibody TH001, variable domain of heavy chain, ...
Authors:Zhang, M, Wang, Y.Q, Xiao, J.Y.
Deposit date:2024-09-28
Release date:2025-06-18
Last modified:2025-06-25
Method:ELECTRON MICROSCOPY (3.34 Å)
Cite:Structures of butyrophilin multimers reveal a plier-like mechanism for V gamma 9V delta 2 T cell receptor activation.
Immunity, 2025
3CZX
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BU of 3czx by Molmil
The crystal structure of the putative N-acetylmuramoyl-L-alanine amidase from Neisseria meningitidis
Descriptor: Putative N-acetylmuramoyl-L-alanine amidase, ZINC ION
Authors:Zhang, R, Zhou, M, Bargassa, M, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-04-30
Release date:2008-07-01
Last modified:2024-11-06
Method:X-RAY DIFFRACTION (1.6 Å)
Cite:The crystal structure of the putative N-acetylmuramoyl-L-alanine amidase from Neisseria meningitidis.
To be Published
3D0B
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BU of 3d0b by Molmil
Crystal Structure of Benzamide Tetrahydro-4H-carbazol-4-one bound to Hsp90
Descriptor: 2-[(2-methoxyethyl)amino]-4-(4-oxo-1,2,3,4-tetrahydro-9H-carbazol-9-yl)benzamide, Heat shock protein HSP 90-alpha
Authors:Barta, T.E, Veal, J.M, Huang, K.H, Hall, S.H.
Deposit date:2008-05-01
Release date:2008-06-17
Last modified:2024-04-10
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Discovery of benzamide tetrahydro-4H-carbazol-4-ones as novel small molecule inhibitors of Hsp90
BIOORG.MED.CHEM.LETT., 18, 2008
3D0J
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BU of 3d0j by Molmil
Crystal structure of conserved protein of unknown function CA_C3497 from Clostridium acetobutylicum ATCC 824
Descriptor: FORMIC ACID, GLYCEROL, Uncharacterized protein CA_C3497
Authors:Kim, Y, Bigelow, L, Clancy, S, Abdullah, J, Joachimiak, A, Midwest Center for Structural Genomics (MCSG)
Deposit date:2008-05-01
Release date:2008-07-01
Last modified:2024-10-30
Method:X-RAY DIFFRACTION (1.53 Å)
Cite:Crystal Structure of Conserved Protein of Unknown Function CA_C3497 from Clostridium acetobutylicum ATCC 824.
To be Published
3CF5
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BU of 3cf5 by Molmil
Thiopeptide antibiotic Thiostrepton bound to the large ribosomal subunit of Deinococcus radiodurans
Descriptor: 50S RIBOSOMAL PROTEIN L11, 50S RIBOSOMAL PROTEIN L13, 50S RIBOSOMAL PROTEIN L14, ...
Authors:Harms, J.M, Wilson, D.N, Schluenzen, F, Connell, S.R, Stachelhaus, T, Zaborowska, Z, Spahn, C.M.T, Fucini, P.
Deposit date:2008-03-02
Release date:2008-06-17
Last modified:2023-11-15
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Translational Regulation Via L11: Molecular Switches on the Ribosome Turned on and Off by Thiostrepton and Micrococcin.
Mol.Cell, 30, 2008
2VDN
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BU of 2vdn by Molmil
Re-refinement of Integrin AlphaIIbBeta3 Headpiece Bound to Antagonist Eptifibatide
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, EPTIFIBATIDE, ...
Authors:Springer, T.A, Zhu, J, Xiao, T.
Deposit date:2007-10-10
Release date:2008-09-02
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural Basis for Distinctive Recognition of Fibrinogen Gammac Peptide by the Platelet Integrin Alphaiibbeta3.
J.Cell Biol., 182, 2008
3D1K
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BU of 3d1k by Molmil
R/T intermediate quaternary structure of an antarctic fish hemoglobin in an alpha(CO)-beta(pentacoordinate) state
Descriptor: ACETYL GROUP, CARBON MONOXIDE, Hemoglobin subunit alpha-1, ...
Authors:Vitagliano, L, Vergara, A, Bonomi, G, Merlino, A, Mazzarella, L.
Deposit date:2008-05-06
Release date:2008-08-05
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.25 Å)
Cite:Spectroscopic and crystallographic characterization of a tetrameric hemoglobin oxidation reveals structural features of the functional intermediate relaxed/tense state.
J.Am.Chem.Soc., 130, 2008
3D1V
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BU of 3d1v by Molmil
Crystal structure of human PNP complexed with 2-mercapto(3H) quinazolinone
Descriptor: 2-mercapto(3H)quinazolinone, Purine nucleoside phosphorylase, SULFATE ION
Authors:De Azevedo Jr, W.F, Basso, L.A, Santos, D.S.
Deposit date:2008-05-06
Release date:2009-07-14
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural studies of human purine nucleoside phosphorylase: towards a new specific empirical scoring function
Arch.Biochem.Biophys., 479, 2008
3CIR
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BU of 3cir by Molmil
E. coli Quinol fumarate reductase FrdA T234A mutation
Descriptor: FE2/S2 (INORGANIC) CLUSTER, FE3-S4 CLUSTER, FLAVIN-ADENINE DINUCLEOTIDE, ...
Authors:Tomasiak, T.M, Maklashina, E, Cecchini, G, Iverson, T.M.
Deposit date:2008-03-11
Release date:2008-04-01
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (3.65 Å)
Cite:A threonine on the active site loop controls transition state formation in Escherichia coli respiratory complex II.
J.Biol.Chem., 283, 2008

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