PDB: 72308 resultsInfo pagesStatus searchChemie searchBIRD

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5SBE	Tubulin-maytansinoid-5c-complex Descriptor: (1S,2R,3S,5S,6S,16E,18E,20R)-11-chloro-12,20-dimethoxy-2,5,9,16-tetramethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18,21-hexaen-6-yl hept-6-ynoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Marzullo, P, Boiarska, Z, Perez-Pena, H, Abel, A.-C, Alvarez-Bernad, B, Lucena-Agell, D, Vasile, F, Sironi, M, Steinmetz, M.O, Prota, A.E, Diaz, J.F, Pieraccini, S, Passarella, D. Deposit date: 2021-07-20 Release date: 2021-12-08 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Maytansinol Derivatives: Side Reactions as a Chance for New Tubulin Binders. Chemistry, 28, 2022
5SBB	Tubulin-maytansinoid-4c-complex Descriptor: (1R,2R,3S,5S,6S,16E,18E,20R,21S)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,9,16-tetramethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl heptanoate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Marzullo, P, Boiarska, Z, Perez-Pena, H, Abel, A.-C, Alvarez-Bernad, B, Lucena-Agell, D, Vasile, F, Sironi, M, Steinmetz, M.O, Prota, A.E, Diaz, J.F, Pieraccini, S, Passarella, D. Deposit date: 2021-07-20 Release date: 2021-12-08 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.25 Å) Cite: Maytansinol Derivatives: Side Reactions as a Chance for New Tubulin Binders. Chemistry, 28, 2022
5SBC	Tubulin-maytansinoid-5a-complex Descriptor: (1S,2R,3S,5S,6S,16E,18E,20R)-11-chloro-12,20-dimethoxy-2,5,9,16-tetramethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18,21-hexaen-6-yl phenylacetate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Marzullo, P, Boiarska, Z, Perez-Pena, H, Abel, A.-C, Alvarez-Bernad, B, Lucena-Agell, D, Vasile, F, Sironi, M, Steinmetz, M.O, Prota, A.E, Diaz, J.F, Pieraccini, S, Passarella, D. Deposit date: 2021-07-20 Release date: 2021-12-08 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.32 Å) Cite: Maytansinol Derivatives: Side Reactions as a Chance for New Tubulin Binders. Chemistry, 28, 2022
5SB9	Tubulin-maytansinoid-4a-complex Descriptor: (1S,2R,3S,5S,6S,16E,18E,20R,21S)-11-chloro-21-hydroxy-12,20-dimethoxy-2,5,9,16-tetramethyl-8,23-dioxo-4,24-dioxa-9,22-diazatetracyclo[19.3.1.1~10,14~.0~3,5~]hexacosa-10(26),11,13,16,18-pentaen-6-yl phenylacetate, 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, CALCIUM ION, ... Authors: Marzullo, P, Boiarska, Z, Perez-Pena, H, Abel, A.-C, Alvarez-Bernad, B, Lucena-Agell, D, Vasile, F, Sironi, M, Steinmetz, M.O, Prota, A.E, Diaz, J.F, Pieraccini, S, Passarella, D. Deposit date: 2021-07-20 Release date: 2021-12-08 Last modified: 2024-05-22 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Maytansinol Derivatives: Side Reactions as a Chance for New Tubulin Binders. Chemistry, 28, 2022
4YVO	Crystal Structure of the TPR Domain of Arabidopsis FLU (FLU-TPR) Descriptor: Protein FLUORESCENT IN BLUE LIGHT, chloroplastic Authors: Zhang, M, Zhang, F, Liu, L. Deposit date: 2015-03-20 Release date: 2015-06-10 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.45 Å) Cite: The Non-canonical Tetratricopeptide Repeat (TPR) Domain of Fluorescent (FLU) Mediates Complex Formation with Glutamyl-tRNA Reductase. J.Biol.Chem., 290, 2015
6BMD	RNA hairpin containing GpppG-oligo to mimic intermediate formed by activated monomer and activated downstream helper Descriptor: RNA (5'-D(*(GP3))-R(P*CP*AP*CP*CP*UP*CP*A)-3'), RNA (5'-R(P*GP*AP*GP*GP*UP*GP*(LCC)P*(LCC)P*GP*AP*GP*CP*GP*CP*GP*AP*AP*AP*GP*CP*GP*CP*UP*C)-3') Authors: Zhang, W, Szostak, J.W. Deposit date: 2017-11-14 Release date: 2018-02-21 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (3 Å) Cite: Structural Rationale for the Enhanced Catalysis of Nonenzymatic RNA Primer Extension by a Downstream Oligonucleotide. J. Am. Chem. Soc., 140, 2018
3WND	Crystal structure of EF-Pyl Descriptor: CITRIC ACID, Protein translation elongation factor 1A Authors: Yanagisawa, T, Ishii, R, Fukunaga, R, Sengoku, T, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) Deposit date: 2013-12-08 Release date: 2014-12-10 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.55 Å) Cite: A SelB/EF-Tu/aIF2 gamma-like protein from Methanosarcina mazei in the GTP-bound form binds cysteinyl-tRNA(Cys.). J. Struct. Funct. Genomics, 16, 2015
3RL6	Crystal structure of the archaeal asparagine synthetase A complexed with L-Asparagine and Adenosine monophosphate Descriptor: ADENOSINE MONOPHOSPHATE, ASPARAGINE, Archaeal asparagine synthetase A, ... Authors: Blaise, M, Frechin, M, Charron, C, Roy, H, Sauter, C, Lorber, B, Olieric, V, Kern, D. Deposit date: 2011-04-19 Release date: 2011-08-17 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal Structure of the Archaeal Asparagine Synthetase: Interrelation with Aspartyl-tRNA and Asparaginyl-tRNA Synthetases. J.Mol.Biol., 412, 2011
5V59	Crystal structure of catalytic fragment of human AlaRS in complex with Aze-SA Descriptor: 5'-O-{[(2S)-azetidine-2-carbonyl]sulfamoyl}adenosine, Alanine--tRNA ligase, cytoplasmic Authors: Zhou, H, Song, Y, Schimmel, P. Deposit date: 2017-03-13 Release date: 2018-01-10 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.03 Å) Cite: Double mimicry evades tRNA synthetase editing by toxic vegetable-sourced non-proteinogenic amino acid. Nat Commun, 8, 2017
7YNU	Crystal structure of Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ... Authors: Hosaka, T, Shirouzu, M. Deposit date: 2022-08-01 Release date: 2022-09-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.44 Å) Cite: Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography. Int J Mol Sci, 23, 2022
7YNV	Crystal structure of photolysed Hen Egg white LYSOZYME introduced with O-(2-nitrobenzyl)-L-tyrosine Descriptor: ACETATE ION, CHLORIDE ION, Lysozyme C, ... Authors: Hosaka, T, Shirouzu, M. Deposit date: 2022-08-01 Release date: 2022-09-21 Last modified: 2023-11-29 Method: X-RAY DIFFRACTION (1.39 Å) Cite: Crystal Structure of an Archaeal Tyrosyl-tRNA Synthetase Bound to Photocaged L-Tyrosine and Its Potential Application to Time-Resolved X-ray Crystallography. Int J Mol Sci, 23, 2022
3IP4	The high resolution structure of GatCAB Descriptor: Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit B, Aspartyl/glutamyl-tRNA(Asn/Gln) amidotransferase subunit C, Glutamyl-tRNA(Gln) amidotransferase subunit A, ... Authors: Nakamura, A, Yao, M, Tanaka, I. Deposit date: 2009-08-17 Release date: 2009-11-24 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (1.9 Å) Cite: Two distinct regions in Staphylococcus aureus GatCAB guarantee accurate tRNA recognition Nucleic Acids Res., 38, 2010
4H2X	Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and an analogue of glycyl adenylate Descriptor: 4'-PHOSPHOPANTETHEINE, 5'-O-(glycylsulfamoyl)adenosine, Amino acid--[acyl-carrier-protein] ligase 1, ... Authors: Luic, M, Weygand-Durasevic, I, Ivic, N, Mocibob, M. Deposit date: 2012-09-13 Release date: 2013-03-06 Last modified: 2017-08-23 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation. Structure, 21, 2013
4H2U	Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and ATP Descriptor: 4'-PHOSPHOPANTETHEINE, ACETATE ION, ADENOSINE-5'-TRIPHOSPHATE, ... Authors: Luic, M, Weygand-Durasevic, I, Ivic, N, Mocibob, M. Deposit date: 2012-09-13 Release date: 2013-03-06 Last modified: 2013-05-29 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation. Structure, 21, 2013
4H2Y	Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and ATP Descriptor: 4'-PHOSPHOPANTETHEINE, ADENOSINE-5'-TRIPHOSPHATE, Amino acid--[acyl-carrier-protein] ligase 1, ... Authors: Luic, M, Weygand-Durasevic, I, Ivic, N, Mocibob, M. Deposit date: 2012-09-13 Release date: 2013-03-06 Last modified: 2017-08-23 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation. Structure, 21, 2013
4H2S	Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and AMP Descriptor: 4'-PHOSPHOPANTETHEINE, ACETATE ION, ADENOSINE MONOPHOSPHATE, ... Authors: Luic, M, Weygand-Durasevic, I, Ivic, N, Mocibob, M. Deposit date: 2012-09-13 Release date: 2013-03-06 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation. Structure, 21, 2013
4H2V	Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with glycylated carrier protein Descriptor: 4'-PHOSPHOPANTETHEINE, ACETATE ION, ADENOSINE MONOPHOSPHATE, ... Authors: Luic, M, Weygand-Durasevic, I, Ivic, N, Mocibob, M. Deposit date: 2012-09-13 Release date: 2013-03-06 Last modified: 2013-05-29 Method: X-RAY DIFFRACTION (2 Å) Cite: Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation. Structure, 21, 2013
4H2T	Crystal structure of Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with cognate carrier protein and an analogue of glycyl adenylate Descriptor: 4'-PHOSPHOPANTETHEINE, 5'-O-(glycylsulfamoyl)adenosine, Amino acid--[acyl-carrier-protein] ligase 1, ... Authors: Luic, M, Weygand-Durasevic, I, Ivic, N, Mocibob, M. Deposit date: 2012-09-13 Release date: 2013-03-06 Last modified: 2013-06-19 Method: X-RAY DIFFRACTION (2.44 Å) Cite: Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation. Structure, 21, 2013
4H2W	Crystal structure of engineered Bradyrhizobium japonicum glycine:[carrier protein] ligase complexed with carrier protein from Agrobacterium tumefaciens and AMP Descriptor: 4'-PHOSPHOPANTETHEINE, ADENOSINE MONOPHOSPHATE, Amino acid--[acyl-carrier-protein] ligase 1, ... Authors: Luic, M, Weygand-Durasevic, I, Ivic, N, Mocibob, M. Deposit date: 2012-09-13 Release date: 2013-03-06 Last modified: 2017-08-23 Method: X-RAY DIFFRACTION (1.95 Å) Cite: Adaptation of aminoacyl-tRNA synthetase catalytic core to carrier protein aminoacylation. Structure, 21, 2013
6EC7	Glutamylation domain, TbtB, from thiomuracin biosynthesis Descriptor: Lantibiotic dehydratase domain protein Authors: Cogan, D.P, Nair, S.K. Deposit date: 2018-08-07 Release date: 2019-08-14 Last modified: 2024-03-06 Method: X-RAY DIFFRACTION (2.15 Å) Cite: Characterization of glutamyl-tRNA-dependent dehydratases using nonreactive substrate mimics. Proc.Natl.Acad.Sci.USA, 116, 2019
6EC8	Glutamylation domain, TbtB, from thiomuracin biosynthesis bound to 5'-phosphodesmethylglutamycin Descriptor: 3'-deoxy-3'-[(L-alpha-glutamyl)amino]adenosine 5'-(dihydrogen phosphate), Lantibiotic dehydratase domain protein Authors: Cogan, D.P, Nair, S.K. Deposit date: 2018-08-07 Release date: 2019-06-19 Last modified: 2023-10-11 Method: X-RAY DIFFRACTION (2.148 Å) Cite: Characterization of glutamyl-tRNA-dependent dehydratases using nonreactive substrate mimics. Proc.Natl.Acad.Sci.USA, 116, 2019
1BUI	Structure of the ternary microplasmin-staphylokinase-microplasmin complex: a proteinase-cofactor-substrate complex in action Descriptor: L-alpha-glutamyl-N-{(1S)-4-{[amino(iminio)methyl]amino}-1-[(1S)-2-chloro-1-hydroxyethyl]butyl}glycinamide, Plasminogen, Staphylokinase Authors: Parry, M.A.A, Fernandez-Catalan, C, Bergner, A, Huber, R, Hopfner, K, Schlott, B, Guehrs, K, Bode, W. Deposit date: 1998-09-04 Release date: 1999-09-02 Last modified: 2023-08-09 Method: X-RAY DIFFRACTION (2.65 Å) Cite: The ternary microplasmin-staphylokinase-microplasmin complex is a proteinase-cofactor-substrate complex in action. Nat.Struct.Biol., 5, 1998
4UV2	Structure of the curli transport lipoprotein CsgG in a non-lipidated, pre-pore conformation Descriptor: CURLI PRODUCTION TRANSPORT COMPONENT CSGG Authors: Goyal, P, Krasteva, P.V, Gerven, N.V, Gubellini, F, Broeck, I.V.D, Troupiotis-Tsailaki, A, Jonckheere, W, Pehau-Arnaudet, G, Pinkner, J.S, Chapman, M.R, Hultgren, S.J, Howorka, S, Fronzes, R, Remaut, H. Deposit date: 2014-08-04 Release date: 2014-09-24 Last modified: 2014-12-17 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Structural and Mechanistic Insights Into the Bacterial Amyloid Secretion Channel Csgg. Nature, 516, 2014
3S7T	Crystal structure of SeMet B. licheniformis CDPS YvmC-Blic Descriptor: Putative uncharacterized protein yvmC Authors: Bonnefond, L, Ishitani, R, Nureki, O. Deposit date: 2011-05-26 Release date: 2011-06-22 Last modified: 2017-11-08 Method: X-RAY DIFFRACTION (2.808 Å) Cite: Structural basis for nonribosomal peptide synthesis by an aminoacyl-tRNA synthetase paralog. Proc.Natl.Acad.Sci.USA, 108, 2011
3LMV	D-Tyr-tRNA(Tyr) Deacylase from plasmodium falciparum in complex with hepes Descriptor: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, D-tyrosyl-tRNA(Tyr) deacylase, SULFITE ION Authors: Manickam, Y, Khan, S, Bhatt, T.K, Sharma, A. Deposit date: 2010-02-01 Release date: 2010-03-02 Last modified: 2023-11-01 Method: X-RAY DIFFRACTION (2.833 Å) Cite: Structure of D-tyrosyl-tRNATyr deacylase using home-source Cu Kalpha and moderate-quality iodide-SAD data: structural polymorphism and HEPES-bound enzyme states Acta Crystallogr.,Sect.D, 66, 2010

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