PDB: 98078 resultsInfo pagesStatus searchChemie searchBIRD

---

1VWO	STREPTAVIDIN COMPLEXED WITH CYCLO-AC-[CHPQGPPC]-NH2 MONOMER, PH 2.85 Descriptor: PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN Authors: Katz, B.A, Cass, R.T. Deposit date: 1997-03-03 Release date: 1998-03-18 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.65 Å) Cite: In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0. J.Biol.Chem., 272, 1997
2RNO	Solution Structure of the N-terminal SAP Domain of SUMO E3 Ligases from Oryza sativa Descriptor: Putative DNA-binding protein Authors: Suzuki, R, Shindo, H, Tase, A, Yamazaki, T. Deposit date: 2008-01-30 Release date: 2008-12-30 Last modified: 2024-05-01 Method: SOLUTION NMR Cite: Solution structures and DNA binding properties of the N-terminal SAP domains of SUMO E3 ligases from Saccharomyces cerevisiae and Oryza sativa. Proteins, 75, 2009
1VWK	STREPTAVIDIN-CYCLO-[5-S-VALERAMIDE-HPQGPPC]K-NH2 Descriptor: PENTANOIC ACID, PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN Authors: Katz, B.A, Cass, R.T. Deposit date: 1997-03-03 Release date: 1998-03-18 Last modified: 2024-10-09 Method: X-RAY DIFFRACTION (1.45 Å) Cite: In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0. J.Biol.Chem., 272, 1997
1VWI	STREPTAVIDIN-CYCLO-[5-S-VALERAMIDE-HPQGPPC]K-NH2, PH 1.5, I222 COMPLEX Descriptor: PENTANOIC ACID, PEPTIDE LIGAND CONTAINING HPQ, STREPTAVIDIN Authors: Katz, B.A, Cass, R.T. Deposit date: 1997-03-03 Release date: 1998-03-18 Last modified: 2024-10-30 Method: X-RAY DIFFRACTION (1.5 Å) Cite: In crystals of complexes of streptavidin with peptide ligands containing the HPQ sequence the pKa of the peptide histidine is less than 3.0. J.Biol.Chem., 272, 1997
3NTW	Structure of the MLLE domain of EDD in complex with a PAM2 peptide from Paip1 Descriptor: E3 ubiquitin-protein ligase UBR5, Polyadenylate-binding protein-interacting protein 1 Authors: Kozlov, G, Gehring, K. Deposit date: 2010-07-05 Release date: 2011-07-06 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.6 Å) Cite: The MLLE domain of the ubiquitin ligase UBR5 binds to its catalytic domain to regulate substrate binding. J. Biol. Chem., 290, 2015
2RJ2	Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution Descriptor: CHLORIDE ION, F-box only protein 2, NICKEL (II) ION Authors: Vaijayanthimala, S, Velmurugan, D, Mizushima, T, Yamane, T, Yoshida, Y, Tanaka, K. Deposit date: 2007-10-14 Release date: 2008-10-14 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Crystal Structure of the Sugar Recognizing SCF Ubiquitin Ligase at 1.7 Resolution To be Published
4R1L	Crystal structure of a Putative Acyl-CoA ligase (BT_0428) from Bacteroides thetaiotaomicron VPI-5482 at 2.42 A resolution Descriptor: 1,2-ETHANEDIOL, ADENOSINE MONOPHOSPHATE, ADENOSINE-5'-DIPHOSPHATE, ... Authors: Joint Center for Structural Genomics (JCSG) Deposit date: 2014-08-06 Release date: 2014-08-27 Last modified: 2024-11-27 Method: X-RAY DIFFRACTION (2.42 Å) Cite: Crystal structure of a Hypothetical Acyl-CoA ligase (BT_0428) from Bacteroides thetaiotaomicron VPI-5482 at 2.42 A resolution To be published
3RFC	Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP Descriptor: ADENOSINE-5'-DIPHOSPHATE, D-alanine--D-alanine ligase 1, MAGNESIUM ION Authors: Doan, T.T.N, Kim, J.K, Ahn, Y.J, Kang, L.W. Deposit date: 2011-04-06 Release date: 2011-05-04 Last modified: 2024-03-20 Method: X-RAY DIFFRACTION (2.1 Å) Cite: Crystal structure of D-alanine-D-alanine ligase A from Xanthomonas oryzae pathovar oryzae with ADP to be published
2PZD	Crystal Structure of the HtrA2/Omi PDZ Domain Bound to a Phage-Derived Ligand (WTMFWV) Descriptor: 1,2-ETHANEDIOL, Serine protease HTRA2 Authors: Appleton, B.A, Wiesmann, C. Deposit date: 2007-05-17 Release date: 2007-08-07 Last modified: 2023-09-20 Method: X-RAY DIFFRACTION (2.75 Å) Cite: Structural and functional analysis of the ligand specificity of the HtrA2/Omi PDZ domain. Protein Sci., 16, 2007
1SWW	Crystal structure of the phosphonoacetaldehyde hydrolase D12A mutant complexed with magnesium and substrate phosphonoacetaldehyde Descriptor: MAGNESIUM ION, PHOSPHONOACETALDEHYDE, phosphonoacetaldehyde hydrolase Authors: Zhang, G, Morais, M.C, Dai, J, Zhang, W, Dunaway-Mariano, D, Allen, K.N. Deposit date: 2004-03-30 Release date: 2004-10-05 Last modified: 2023-08-23 Method: X-RAY DIFFRACTION (2.3 Å) Cite: Investigation of metal ion binding in phosphonoacetaldehyde hydrolase identifies sequence markers for metal-activated enzymes of the HAD enzyme superfamily Biochemistry, 43, 2004
3WSW	Crystal structure of minor L-lactate dehydrogenase from Enterococcus mundtii in the ligands-bound form Descriptor: 1,6-di-O-phosphono-beta-D-fructofuranose, GLYCEROL, L-lactate dehydrogenase, ... Authors: Matoba, Y, Sugiyama, M. Deposit date: 2014-03-27 Release date: 2014-09-10 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.3 Å) Cite: An alternative allosteric regulation mechanism of an acidophilic l-lactate dehydrogenase from Enterococcus mundtii 15-1A. Febs Open Bio, 4, 2014
3WSV	Crystal structure of minor L-lactate dehydrogenase from Enterococcus mundtii in the ligands-unbound form Descriptor: GLYCEROL, L-lactate dehydrogenase Authors: Matoba, Y, Sugiyama, M. Deposit date: 2014-03-27 Release date: 2014-09-10 Last modified: 2023-11-08 Method: X-RAY DIFFRACTION (2.38 Å) Cite: An alternative allosteric regulation mechanism of an acidophilic l-lactate dehydrogenase from Enterococcus mundtii 15-1A. Febs Open Bio, 4, 2014
2EG6	The crystal structure of the ligand-free dihydroorotase from E. coli Descriptor: Dihydroorotase, ZINC ION Authors: Lee, M, Maher, M.J, Guss, J.M. Deposit date: 2007-02-28 Release date: 2007-07-03 Last modified: 2023-11-15 Method: X-RAY DIFFRACTION (1.7 Å) Cite: Structures of Ligand-free and Inhibitor Complexes of Dihydroorotase from Escherichia coli: Implications for Loop Movement in Inhibitor Design J.Mol.Biol., 370, 2007
5MQ0	Structure of a spliceosome remodeled for exon ligation Descriptor: 3'-EXON OF UBC4 PRE-MRNA, BOUND BY PRP22 HELICASE, 5'-EXON OF UBC4 PRE-MRNA, ... Authors: Fica, S.M, Oubridge, C, Galej, W.P, Wilkinson, M.E, Newman, A.J, Bai, X.-C, Nagai, K. Deposit date: 2016-12-19 Release date: 2017-01-18 Last modified: 2024-11-06 Method: ELECTRON MICROSCOPY (4.17 Å) Cite: Structure of a spliceosome remodelled for exon ligation. Nature, 542, 2017
3TIG	Tubulin tyrosine ligase Descriptor: MAGNESIUM ION, Ttl protein Authors: Roll-Mecak, A, Szyk, A, Deaconescu, A, Piszczek, G. Deposit date: 2011-08-20 Release date: 2011-10-26 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Tubulin tyrosine ligase structure reveals adaptation of an ancient fold to bind and modify tubulin. Nat.Struct.Mol.Biol., 18, 2011
6Z6C	Crystal structurel of FleA lectin in complex with a monovalent inhibitor Descriptor: 4-((1-(2-(2-(2-(2-hydroxyethoxy)ethoxy)ethoxy)ethyl)-1H-1,2,3-triazol-4-yl)methoxy)benzyl-a-L-thiofucoside, Fucose-specific lectin, GLYCEROL, ... Authors: Varrot, A. Deposit date: 2020-05-28 Release date: 2021-04-07 Last modified: 2024-01-24 Method: X-RAY DIFFRACTION (1.4 Å) Cite: Hexavalent thiofucosides to probe the role of the Aspergillus fumigatus lectin FleA in fungal pathogenicity. Org.Biomol.Chem., 19, 2021
3O2P	A Dual E3 Mechanism for Rub1 Ligation to Cdc53: Dcn1(P)-Cdc53(WHB) Descriptor: Cell division control protein 53, Defective in cullin neddylation protein 1, GLYCEROL Authors: Scott, D.C, Monda, J.K, Grace, C.R.R, Duda, D.M, Kriwacki, R.W, Kurz, T, Schulman, B.A. Deposit date: 2010-07-22 Release date: 2010-09-15 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.233 Å) Cite: A dual E3 mechanism for Rub1 ligation to Cdc53. Mol.Cell, 39, 2010
3HQL	Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases:SPOPMATHx-PucSBC1_pep2 Descriptor: Puckered, SULFATE ION, Speckle-type POZ protein Authors: Zhuang, M, Schulman, B.A. Deposit date: 2009-06-07 Release date: 2009-10-20 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.66 Å) Cite: Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Mol.Cell, 36, 2009
3HQM	Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATHx-CiSBC2 Descriptor: Protein cubitus interruptus, SULFATE ION, Speckle-type POZ protein Authors: Zhuang, M, Schulman, B.A. Deposit date: 2009-06-07 Release date: 2009-10-20 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (1.74 Å) Cite: Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Mol.Cell, 36, 2009
1H9M	Two crystal structures of the cytoplasmic molybdate-binding protein ModG suggest a novel cooperative binding mechanism and provide insights into ligand-binding specificity. PEG-grown form with molybdate bound Descriptor: MOLYBDATE ION, MOLYBDENUM-BINDING-PROTEIN Authors: Delarbre, L, Stevenson, C.E.M, White, D.J, Mitchenall, L.A, Pau, R.N, Lawson, D.M. Deposit date: 2001-03-13 Release date: 2001-05-11 Last modified: 2023-12-13 Method: X-RAY DIFFRACTION (1.65 Å) Cite: Two Crystal Structures of the Cytoplasmic Molybdate-Binding Protein Modg Suggest a Novel Cooperative Binding Mechanism and Provide Insights Into Ligand-Binding Specificity J.Mol.Biol., 308, 2001
3HU6	Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATHx/BTB/3-box-PucSBC1 Descriptor: Puckered, Speckle-type POZ protein Authors: Zhuang, M, Schulman, B.A. Deposit date: 2009-06-13 Release date: 2009-10-20 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.7 Å) Cite: Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Mol.Cell, 36, 2009
6PQH	Crystal structure of Asparagine-tRNA ligase from Elizabethkingia sp. CCUG 26117 Descriptor: 1,2-ETHANEDIOL, Asparagine--tRNA ligase Authors: Seattle Structural Genomics Center for Infectious Disease (SSGCID) Deposit date: 2019-07-09 Release date: 2019-07-31 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2 Å) Cite: Crystal structure of Asparagine-tRNA ligase from Elizabethkingia sp. CCUG 26117 TO BE PUBLISHED
3HTM	Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPBTB/3-box Descriptor: Speckle-type POZ protein Authors: Zhuang, M, Walden, H, Schulman, B.A. Deposit date: 2009-06-11 Release date: 2009-10-20 Last modified: 2024-11-06 Method: X-RAY DIFFRACTION (2.5 Å) Cite: Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Mol.Cell, 36, 2009
4BBN	NEDD4 HECT-Ub:Ub complex Descriptor: E3 UBIQUITIN-PROTEIN LIGASE NEDD4, POLYUBIQUITIN-B Authors: Maspero, E, Valentini, E, Mari, S, Cecatiello, V, Polo, S, Pasqualato, S. Deposit date: 2012-09-27 Release date: 2013-05-01 Last modified: 2024-11-20 Method: X-RAY DIFFRACTION (2.51 Å) Cite: Structure of a Ubiquitin-Loaded Hect Ligase Reveals the Molecular Basis for Catalytic Priming Nat.Struct.Mol.Biol., 20, 2013
3HQI	Structures of SPOP-Substrate Complexes: Insights into Molecular Architectures of BTB-Cul3 Ubiquitin Ligases: SPOPMATHx/BTB/3-box-PucSBC1 Descriptor: PucSBC1, Speckle-type POZ protein Authors: Zhuang, M, Schulman, B.A. Deposit date: 2009-06-07 Release date: 2009-10-20 Last modified: 2023-09-06 Method: X-RAY DIFFRACTION (2.62 Å) Cite: Structures of SPOP-substrate complexes: insights into molecular architectures of BTB-Cul3 ubiquitin ligases. Mol.Cell, 36, 2009

<120121122123124125126127128129130131132133134135>