PDB: 72678 resultsInfo pagesStatus searchChemie searchBIRD

---

4JI2	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus Descriptor: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ... Authors: Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T. Deposit date: 2013-03-05 Release date: 2013-11-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.64 Å) Cite: The central role of protein S12 in organizing the structure of the decoding site of the ribosome. Rna, 19, 2013
5CYR	Crystal structure of Thosea asigna virus RNA-dependent RNA polymerase (RdRP) complexed with ATP and ssRNA Descriptor: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, PHOSPHATE ION, ... Authors: Ferrero, D.S, Buxaderas, M, Rodriguez, J.F, Verdaguer, N. Deposit date: 2015-07-30 Release date: 2015-11-11 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (3.504 Å) Cite: The Structure of the RNA-Dependent RNA Polymerase of a Permutotetravirus Suggests a Link between Primer-Dependent and Primer-Independent Polymerases. Plos Pathog., 11, 2015
5N8M	Structure of TRBP dsRBD 1 and 2 in complex with a 19 bp siRNA (Complex A) Descriptor: RISC-loading complex subunit TARBP2, RNA (5'-R(*GP*UP*AP*CP*GP*GP*AP*AP*UP*AP*GP*AP*UP*AP*AP*UP*UP*AP*AP*UP*U)-3'), RNA (5'-R(*UP*UP*AP*AP*UP*UP*AP*UP*CP*UP*AP*UP*UP*CP*CP*GP*UP*AP*CP*UP*U)-3') Authors: Masliah, G, Maris, C, Allain, H.-T.F. Deposit date: 2017-02-23 Release date: 2018-02-21 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural basis of siRNA recognition by TRBP double-stranded RNA binding domains. EMBO J., 37, 2018
4JI8	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus Descriptor: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ... Authors: Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T. Deposit date: 2013-03-05 Release date: 2013-11-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.742 Å) Cite: The central role of protein S12 in organizing the structure of the decoding site of the ribosome. Rna, 19, 2013
5N8L	Structure of TRBP dsRBD 1 and 2 in complex with a 19 bp siRNA (Complex B) Descriptor: RISC-loading complex subunit TARBP2, RNA (5'-R(*GP*UP*AP*CP*GP*GP*AP*AP*UP*AP*GP*AP*UP*AP*AP*UP*UP*AP*AP*UP*U)-3'), RNA (5'-R(*UP*UP*AP*AP*UP*UP*AP*UP*CP*UP*AP*UP*UP*CP*CP*GP*UP*AP*CP*UP*U)-3') Authors: Masliah, G, Maris, C, Allain, H.-T.F. Deposit date: 2017-02-23 Release date: 2018-02-21 Last modified: 2024-05-15 Method: SOLUTION NMR Cite: Structural basis of siRNA recognition by TRBP double-stranded RNA binding domains. EMBO J., 37, 2018
4JI3	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus Descriptor: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ... Authors: Demirci, H, Wang, L, Murphy, F.V, Murphy, E.L, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T. Deposit date: 2013-03-05 Release date: 2013-11-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.35 Å) Cite: The central role of protein S12 in organizing the structure of the decoding site of the ribosome. Rna, 19, 2013
4JI1	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus Descriptor: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ... Authors: Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T. Deposit date: 2013-03-05 Release date: 2013-11-06 Last modified: 2023-12-06 Method: X-RAY DIFFRACTION (3.144 Å) Cite: The central role of protein S12 in organizing the structure of the decoding site of the ribosome. Rna, 19, 2013
7TNX	Cryo-EM structure of RIG-I in complex with p3dsRNA Descriptor: Antiviral innate immune response receptor RIG-I, ZINC ION, p3dsRNAa, ... Authors: Wang, W, Pyle, A.M. Deposit date: 2022-01-22 Release date: 2022-11-02 Last modified: 2024-06-05 Method: ELECTRON MICROSCOPY (3.54 Å) Cite: The RIG-I receptor adopts two different conformations for distinguishing host from viral RNA ligands. Mol.Cell, 82, 2022
7ZKI	Cryo-EM structure of aIF1A:aIF5B:Met-tRNAiMet complex from a Pyrococcus abyssi 30S initiation complex Descriptor: MAGNESIUM ION, METHIONINE, Met-tRNAiMet, ... Authors: Coureux, P.D, Bourgeois, G, Mechulam, Y, Schmitt, E, Kazan, R. Deposit date: 2022-04-13 Release date: 2022-07-20 Last modified: 2022-08-31 Method: ELECTRON MICROSCOPY (3.6 Å) Cite: Role of aIF5B in archaeal translation initiation. Nucleic Acids Res., 50, 2022
5I62	Crystal structure of the insertion loop deletion mutant of the RNA-dependent RNA polymerase of a human picorbirnavirus Descriptor: Potential RNA-dependent RNA polymerase Authors: Collier, A.M, Guo, Y.R, Tao, Y.J. Deposit date: 2016-02-15 Release date: 2016-03-16 Last modified: 2024-04-03 Method: X-RAY DIFFRACTION (2.001 Å) Cite: Initiation of RNA Polymerization and Polymerase Encapsidation by a Small dsRNA Virus. Plos Pathog., 12, 2016
5T16	Crystal structure of yeast RNase III (Rnt1p) complexed with a non-hydrolyzable RNA substrate analog Descriptor: 1,2-ETHANEDIOL, RNA substrate analog, Ribonuclease 3 Authors: Song, H, Ji, X. Deposit date: 2016-08-18 Release date: 2017-02-08 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.783 Å) Cite: The Functional Cycle of Rnt1p: Five Consecutive Steps of Double-Stranded RNA Processing by a Eukaryotic RNase III. Structure, 25, 2017
4JI7	Crystal Structure of 30S ribosomal subunit from Thermus thermophilus Descriptor: 16S rRNA, MAGNESIUM ION, RIBOSOMAL PROTEIN S10, ... Authors: Demirci, H, Wang, L, Murphy IV, F, Murphy, E, Carr, J, Blanchard, S, Jogl, G, Dahlberg, A.E, Gregory, S.T. Deposit date: 2013-03-05 Release date: 2013-11-06 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (3.5 Å) Cite: The central role of protein S12 in organizing the structure of the decoding site of the ribosome. Rna, 19, 2013
6TB7	Crystal structure of the ADP-binding domain of the NAD+ riboswitch with Adenosine monophosphate (AMP) Descriptor: ADENOSINE MONOPHOSPHATE, BROMIDE ION, MAGNESIUM ION, ... Authors: Huang, L, Lilley, D.M.J. Deposit date: 2019-11-01 Release date: 2020-09-30 Last modified: 2024-05-15 Method: X-RAY DIFFRACTION (2.53 Å) Cite: Structure and ligand binding of the ADP-binding domain of the NAD + riboswitch. Rna, 26, 2020
5CX6	Crystal structure of Thosea asigna virus RNA-dependent RNA polymerase (RdRP) complexed with CDP Descriptor: CYTIDINE-5'-DIPHOSPHATE, GLYCEROL, MAGNESIUM ION, ... Authors: Ferrero, D.S, Buxaderas, M, Rodriguez, J.F, Verdaguer, N. Deposit date: 2015-07-28 Release date: 2015-11-11 Last modified: 2024-01-10 Method: X-RAY DIFFRACTION (2.1 Å) Cite: The Structure of the RNA-Dependent RNA Polymerase of a Permutotetravirus Suggests a Link between Primer-Dependent and Primer-Independent Polymerases. Plos Pathog., 11, 2015
3TWH	Selenium Derivatized RNA/DNA Hybrid in complex with RNase H Catalytic Domain D132N Mutant Descriptor: DNA (5'-D(*AP*TP*(SDG)P*TP*CP*(SDG))-3'), MAGNESIUM ION, PHOSPHATE ION, ... Authors: Rob, A, Gerlits, O, Jiang, J.S, Gan, J.H, Huang, Z. Deposit date: 2011-09-21 Release date: 2012-10-03 Last modified: 2024-02-28 Method: X-RAY DIFFRACTION (1.79 Å) Cite: Novel complex MAD phasing and RNase H structural insights using selenium oligonucleotides. Acta Crystallogr.,Sect.D, 70, 2014
5I61	Crystal structure of the RNA-dependent RNA polymerase of a human picorbirnavirus Descriptor: Potential RNA-dependent RNA polymerase Authors: Collier, A.M, Guo, Y.R, Tao, Y.J. Deposit date: 2016-02-15 Release date: 2016-03-16 Last modified: 2019-12-11 Method: X-RAY DIFFRACTION (2.4 Å) Cite: Initiation of RNA Polymerization and Polymerase Encapsidation by a Small dsRNA Virus. Plos Pathog., 12, 2016
7UTN	IscB and wRNA bound to Target DNA Descriptor: DNA non-target strand, DNA target strand, IscB, ... Authors: Schuler, G.A, Hu, C, Ke, A. Deposit date: 2022-04-27 Release date: 2022-06-15 Last modified: 2024-02-14 Method: ELECTRON MICROSCOPY (2.74 Å) Cite: Structural basis for RNA-guided DNA cleavage by IscB-omega RNA and mechanistic comparison with Cas9. Science, 376, 2022
3VAL	Structure of U2AF65 variant with BrU5C1 DNA Descriptor: 1,4-DIETHYLENE DIOXIDE, DNA (5'-D(*C*UP*UP*UP*(BRU)P*UP*U)-3'), SULFATE ION, ... Authors: Jenkins, J.L, Frato, K.H, Kielkopf, C.L. Deposit date: 2011-12-29 Release date: 2013-02-13 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (2.5 Å) Cite: U2AF65 adapts to diverse pre-mRNA splice sites through conformational selection of specific and promiscuous RNA recognition motifs. Nucleic Acids Res., 41, 2013
5MSF	MS2 PROTEIN CAPSID/RNA COMPLEX Descriptor: 5'-R(*CP*CP*GP*GP*AP*GP*GP*AP*UP*CP*AP*CP*CP*AP*CP*GP*GP*G)-3', MS2 PROTEIN CAPSID Authors: Rowsell, S, Stonehouse, N.J, Convery, M.A, Adams, C.J, Ellington, A.D, Hirao, I, Peabody, D.S, Stockley, P.G, Phillips, S.E.V. Deposit date: 1998-05-15 Release date: 1998-11-11 Last modified: 2023-08-02 Method: X-RAY DIFFRACTION (2.8 Å) Cite: Crystal structures of a series of RNA aptamers complexed to the same protein target. Nat.Struct.Biol., 5, 1998
7THM	SARS-CoV-2 nsp12/7/8 complex with a native N-terminus nsp9 Descriptor: MANGANESE (II) ION, Non-structural protein 7, Non-structural protein 8, ... Authors: Osinski, A, Tagliabracci, V.S, Chen, Z, Li, Y. Deposit date: 2022-01-11 Release date: 2022-03-16 Last modified: 2024-01-17 Method: ELECTRON MICROSCOPY (3.18 Å) Cite: The mechanism of RNA capping by SARS-CoV-2. Nature, 609, 2022
4GCW	Crystal structure of RNase Z in complex with precursor tRNA(Thr) Descriptor: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID, Ribonuclease Z, TRNA(THR), ... Authors: Pellegrini, O, Li de la Sierra-Gallay, I, Piton, J, Gilet, L, Condon, C. Deposit date: 2012-07-31 Release date: 2012-10-31 Last modified: 2023-09-13 Method: X-RAY DIFFRACTION (3 Å) Cite: Activation of tRNA Maturation by Downstream Uracil Residues in B. subtilis Structure, 20, 2012
8JOZ	Crystal structure of CmoM from E. coli complexed with sinefungin and cellularly expressed tRNA Ser Descriptor: MAGNESIUM ION, SINEFUNGIN, tRNA 5-carboxymethoxyuridine methyltransferase, ... Authors: Yoo, J, Kim, J. Deposit date: 2023-06-09 Release date: 2023-08-30 Last modified: 2023-10-04 Method: X-RAY DIFFRACTION (2.22 Å) Cite: Structural basis for the selective methylation of 5-carboxymethoxyuridine in tRNA modification. Nucleic Acids Res., 51, 2023
6KF3	Cryo-EM structure of Thermococcus kodakarensis RNA polymerase Descriptor: DNA-directed RNA polymerase subunit, DNA-directed RNA polymerase subunit A'', DNA-directed RNA polymerase subunit D, ... Authors: Jun, S.-H, Hyun, J, Jeong, H, Cha, J.S, Kim, H, Bartlett, M.S, Cho, H.-S, Murakami, K.S. Deposit date: 2019-07-06 Release date: 2020-07-01 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.9 Å) Cite: Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020
7LD5	polynucleotide phosphorylase Descriptor: MAGNESIUM ION, Polyribonucleotide nucleotidyltransferase, poly-A RNA fragment Authors: Goldgur, Y, Shuman, S, De La Cruz, M.J, Ghosh, S, Unciuleac, M.-C. Deposit date: 2021-01-12 Release date: 2021-06-30 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.07 Å) Cite: Structure and mechanism of Mycobacterium smegmatis polynucleotide phosphorylase. Rna, 27, 2021
6KF9	Cryo-EM structure of Thermococcus kodakarensis RNA polymerase Descriptor: DNA (27-MER), DNA (5'-D(P*TP*CP*GP*GP*TP*AP*AP*TP*CP*AP*CP*GP*CP*TP*CP*C)-3'), DNA-directed RNA polymerase subunit, ... Authors: Jun, S.-H, Hyun, J, Jeong, H, Cha, J.S, Kim, H, Bartlett, M.S, Cho, H.-S, Murakami, K.S. Deposit date: 2019-07-07 Release date: 2020-07-01 Last modified: 2024-05-29 Method: ELECTRON MICROSCOPY (3.79 Å) Cite: Direct binding of TFE alpha opens DNA binding cleft of RNA polymerase. Nat Commun, 11, 2020

<111112113114115116117118119120121122123124125126>