Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2DU6
DownloadVisualize
BU of 2du6 by Molmil
Crystal structure of Archaeoglobus fulgidus O-phosphoseryl-tRNA synthetase E418N/E420N mutant complexed with tRNAAmber and O-phosphoserine ("amber complex")
Descriptor: O-phosphoseryl-tRNA synthetase, PHOSPHOSERINE, tRNA
Authors:Fukunaga, R.
Deposit date:2006-07-20
Release date:2007-03-13
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:Structural insights into the first step of RNA-dependent cysteine biosynthesis in archaea.
Nat.Struct.Mol.Biol., 14, 2007
2DR7
DownloadVisualize
BU of 2dr7 by Molmil
Complex structure of CCA-adding enzyme with tRNAminiDC
Descriptor: CCA-adding enzyme, SULFATE ION, tRNA (33-MER)
Authors:Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
Deposit date:2006-06-08
Release date:2006-11-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2DRB
DownloadVisualize
BU of 2drb by Molmil
Complex structure of CCA-adding enzyme with tRNAminiCCA
Descriptor: CCA-adding enzyme, SULFATE ION, tRNA (35-MER)
Authors:Tomita, K, Ishitani, R, Fukai, S, Nureki, O.
Deposit date:2006-06-08
Release date:2006-11-14
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Complete crystallographic analysis of the dynamics of CCA sequence addition
Nature, 443, 2006
2GU6
DownloadVisualize
BU of 2gu6 by Molmil
E. coli methionine aminopeptidase in complex with NleP, 1: 2, di-metalated
Descriptor: (1-AMINO-PENTYL)-PHOSPHONIC ACID, MANGANESE (II) ION, Methionine aminopeptidase, ...
Authors:Ye, Q.Z.
Deposit date:2006-04-28
Release date:2006-07-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural basis of catalysis by monometalated methionine aminopeptidase.
Proc.Natl.Acad.Sci.Usa, 103, 2006
2H6T
DownloadVisualize
BU of 2h6t by Molmil
Secreted aspartic proteinase (Sap) 3 from Candida albicans complexed with pepstatin A
Descriptor: Candidapepsin-3, ZINC ION, pepstatin A
Authors:Ruge, E, Borelli, C, Maskos, K, Huber, R.
Deposit date:2006-06-01
Release date:2007-06-12
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:The crystal structure of the secreted aspartic proteinase 3 from Candida albicans and its complex with pepstatin A.
Proteins, 68, 2007
2H6S
DownloadVisualize
BU of 2h6s by Molmil
Secreted aspartic proteinase (Sap) 3 from Candida albicans
Descriptor: Candidapepsin-3, ZINC ION
Authors:Ruge, E, Borelli, C, Maskos, K, Huber, R.
Deposit date:2006-06-01
Release date:2007-06-12
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:The crystal structure of the secreted aspartic proteinase 3 from Candida albicans and its complex with pepstatin A.
Proteins, 68, 2007
2GIY
DownloadVisualize
BU of 2giy by Molmil
Crystal Structure of the C-terminal domain of the HSV-1 gE ectodomain
Descriptor: Glycoprotein E
Authors:Sprague, E.R, Wang, C, Baker, D, Bjorkman, P.J.
Deposit date:2006-03-29
Release date:2006-05-30
Last modified:2017-10-18
Method:X-RAY DIFFRACTION (1.78 Å)
Cite:Crystal Structure of the HSV-1 Fc Receptor Bound to Fc Reveals a Mechanism for Antibody Bipolar Bridging.
Plos Biol., 4, 2006
5HZG
DownloadVisualize
BU of 5hzg by Molmil
The crystal structure of the strigolactone-induced AtD14-D3-ASK1 complex
Descriptor: (2Z)-2-methylbut-2-ene-1,4-diol, F-box/LRR-repeat MAX2 homolog, SKP1-like protein 1A, ...
Authors:Yao, R.F, Ming, Z.H, Yan, L.M, Rao, Z.H, Lou, Z.Y, Xie, D.X.
Deposit date:2016-02-02
Release date:2016-08-03
Last modified:2016-08-31
Method:X-RAY DIFFRACTION (3.3 Å)
Cite:DWARF14 is a non-canonical hormone receptor for strigolactone
Nature, 536, 2016
2Z4Q
DownloadVisualize
BU of 2z4q by Molmil
Crystal structure of a murine antibody FAB 528
Descriptor: CADMIUM ION, CHLORIDE ION, anti egfr antibody fab, ...
Authors:Nakanishi, T, Tsumoto, K, Asano, R, Kondo, H, Kumagai, I.
Deposit date:2007-06-22
Release date:2007-10-30
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Thermodynamic consequences of mutations in vernier zone residues of a humanized anti-human epidermal growth factor receptor murine antibody, 528
J.Biol.Chem., 283, 2008
4KHZ
DownloadVisualize
BU of 4khz by Molmil
Crystal structure of the maltose-binding protein/maltose transporter complex in an pre-translocation conformation bound to maltoheptaose
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, Binding-protein-dependent transport systems inner membrane component, Maltose transport system permease protein MalF, ...
Authors:Oldham, M.L, Chen, S, Chen, J.
Deposit date:2013-05-01
Release date:2013-10-23
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.9 Å)
Cite:Structural basis for substrate specificity in the Escherichia coli maltose transport system.
Proc.Natl.Acad.Sci.USA, 110, 2013
4KIW
DownloadVisualize
BU of 4kiw by Molmil
Design and structural analysis of aromatic inhibitors of type II dehydroquinate dehydratase from Mycobacterium tuberculosis - compound 49e [5-[(3-nitrobenzyl)amino]benzene-1,3-dicarboxylic acid]
Descriptor: 3-dehydroquinate dehydratase, 5-[(3-nitrobenzyl)amino]benzene-1,3-dicarboxylic acid
Authors:Dias, M.V.B, Howard, N.G, Blundell, T.L, Abell, C.
Deposit date:2013-05-02
Release date:2014-05-14
Last modified:2024-02-28
Method:X-RAY DIFFRACTION (2.57 Å)
Cite:Design and Structural Analysis of Aromatic Inhibitors of Type II Dehydroquinase from Mycobacterium tuberculosis.
Chemmedchem, 10, 2015
8F2R
DownloadVisualize
BU of 8f2r by Molmil
Human CCC complex
Descriptor: COMM domain-containing protein 1, COMM domain-containing protein 10, COMM domain-containing protein 2, ...
Authors:Healy, M.D, McNally, K.E, Butkovic, R, Chilton, M, Kato, K, Sacharz, J, McConville, C, Moody, E.R.R, Shaw, S, Planelles-Herrero, V.J, Kadapalakere, S.Y, Ross, J, Borucu, U, Palmer, C.S, Chen, K, Croll, T.I, Hall, R.J, Caruana, N.J, Ghai, R, Nguyen, T.H.D, Heesom, K.J, Saitoh, S, Berger, I, Berger-Schaffitzel, C, Williams, T.A, Stroud, D.A, Derivery, E, Collins, B.M, Cullen, P.J.
Deposit date:2022-11-08
Release date:2023-05-24
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.12 Å)
Cite:Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome.
Cell, 186, 2023
2Z6B
DownloadVisualize
BU of 2z6b by Molmil
Crystal Structure Analysis of (gp27-gp5)3 conjugated with Fe(III) protoporphyrin
Descriptor: 1-ETHYL-PYRROLIDINE-2,5-DIONE, Baseplate structural protein Gp27, Tail-associated lysozyme
Authors:Koshiyama, T, Yokoi, N, Ueno, T, Kanamaru, S, Nagano, S, Shiro, Y, Arisaka, F, Watanabe, Y.
Deposit date:2007-07-28
Release date:2008-04-15
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (3.11 Å)
Cite:Molecular design of heteroprotein assemblies providing a bionanocup as a chemical reactor.
Small, 4, 2008
1RXS
DownloadVisualize
BU of 1rxs by Molmil
E. coli uridine phosphorylase: 2'-deoxyuridine phosphate complex
Descriptor: 2'-DEOXYURIDINE, META VANADATE, PHOSPHATE ION, ...
Authors:Caradoc-Davies, T.T, Cutfield, S.M, Lamont, I.L, Cutfield, J.F.
Deposit date:2003-12-18
Release date:2004-04-13
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.8 Å)
Cite:Crystal structures of escherichia coli uridine phosphorylase in two native and three complexed forms reveal basis of substrate specificity, induced conformational changes and influence of potassium
J.Mol.Biol., 337, 2004
8F2U
DownloadVisualize
BU of 8f2u by Molmil
Human CCC complex
Descriptor: COMM domain-containing protein 1, COMM domain-containing protein 10, COMM domain-containing protein 2, ...
Authors:Healy, M.D, McNally, K.E, Butkovic, R, Chilton, M, Kato, K, Sacharz, J, McConville, C, Moody, E.R.R, Shaw, S, Planelles-Herrero, V.J, Kadapalakere, S.Y, Ross, J, Borucu, U, Palmer, C.S, Chen, K, Croll, T.I, Hall, R.J, Caruana, N.J, Ghai, R, Nguyen, T.H.D, Heesom, K.J, Saitoh, S, Berger, I, Berger-Schaffitzel, C, Williams, T.A, Stroud, D.A, Derivery, E, Collins, B.M, Cullen, P.J.
Deposit date:2022-11-08
Release date:2023-05-24
Last modified:2024-06-19
Method:ELECTRON MICROSCOPY (3.53 Å)
Cite:Structure of the endosomal Commander complex linked to Ritscher-Schinzel syndrome.
Cell, 186, 2023
4K7N
DownloadVisualize
BU of 4k7n by Molmil
HUMAN PEROXIREDOXIN 5 with a fragment
Descriptor: 4-METHYLCATECHOL, Peroxiredoxin-5, mitochondrial
Authors:Guichou, J.F.
Deposit date:2013-04-17
Release date:2014-04-23
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Comparing Binding Modes of Analogous Fragments Using NMR in Fragment-Based Drug Design: Application to PRDX5
Plos One, 9, 2014
5HZW
DownloadVisualize
BU of 5hzw by Molmil
Crystal structure of the orphan region of human endoglin/CD105 in complex with BMP9
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, Growth/differentiation factor 2, Maltose-binding periplasmic protein,Endoglin, ...
Authors:Bokhove, M, Saito, T, Jovine, L.
Deposit date:2016-02-03
Release date:2017-06-07
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (4.451 Å)
Cite:Structural Basis of the Human Endoglin-BMP9 Interaction: Insights into BMP Signaling and HHT1.
Cell Rep, 19, 2017
3LXR
DownloadVisualize
BU of 3lxr by Molmil
Shigella IpgB2 in complex with human RhoA and GDP (complex C)
Descriptor: GUANOSINE-5'-DIPHOSPHATE, IpgB2, SULFATE ION, ...
Authors:Klink, B.U, Barden, S, Heidler, T.V, Borchers, C, Ladwein, M, Stradal, T.E.B, Rottner, K, Heinz, D.W.
Deposit date:2010-02-25
Release date:2010-03-31
Last modified:2023-11-01
Method:X-RAY DIFFRACTION (1.68 Å)
Cite:Structure of Shigella IPGB2 in complex with human RhoA: Implications for the mechanism of bacterial GEF-mimicry
J.Biol.Chem., 285, 2010
5HBY
DownloadVisualize
BU of 5hby by Molmil
RNA primer-template complex with 2-methylimidazole-activated monomer analogue-3 binding sites
Descriptor: MAGNESIUM ION, RNA (5'-R(*(LCC)P*(LCC)P*(LCC)P*(LCG)P*AP*CP*UP*UP*AP*AP*GP*UP*C)-3'), [(2~{R},3~{S},4~{R},5~{R})-5-(2-azanyl-6-oxidanylidene-1~{H}-purin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-(3-methyl-1~{H}-pyrazol-4-yl)phosphinic acid
Authors:Zhang, W, Tam, C.P, Wang, J, Szostak, J.W.
Deposit date:2016-01-03
Release date:2016-12-07
Last modified:2024-03-06
Method:X-RAY DIFFRACTION (1.18 Å)
Cite:Unusual Base-Pairing Interactions in Monomer-Template Complexes.
ACS Cent Sci, 2, 2016
2BX8
DownloadVisualize
BU of 2bx8 by Molmil
Human serum albumin complexed with azapropazone
Descriptor: AZAPROPAZONE, SERUM ALBUMIN
Authors:Ghuman, J, Zunszain, P.A, Petitpas, I, Bhattacharya, A.A, Curry, S.
Deposit date:2005-07-25
Release date:2005-09-22
Last modified:2023-12-13
Method:X-RAY DIFFRACTION (2.7 Å)
Cite:Structural Basis of the Drug-Binding Specificity of Human Serum Albumin.
J.Mol.Biol., 353, 2005
3LYQ
DownloadVisualize
BU of 3lyq by Molmil
Crystal structure of IpgB2 from Shigella flexneri
Descriptor: CITRATE ANION, IpgB2, MU-OXO-DIIRON
Authors:Klink, B.U, Barden, S, Heidler, T.V, Borchers, C, Ladwein, M, Stradal, T.E.B, Rottner, K, Heinz, D.W.
Deposit date:2010-02-28
Release date:2010-03-31
Last modified:2024-03-20
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Structure of Shigella IPGB2 in complex with human RhoA: Implications for the mechanism of bacterial GEF-mimicry
J.Biol.Chem., 285, 2010
7KXD
DownloadVisualize
BU of 7kxd by Molmil
CRYSTAL STRUCTURE OF RAR-RELATED ORPHAN RECEPTOR C (NHIS-RORGT(244-487)-L6-SRC1(678-692)) IN COMPLEX WITH {3,5-DICHLORO-4-[4-METHOXY-3-(PROPAN-2-YL)PHENOXY]PHENYL}METHANOL
Descriptor: Nuclear receptor ROR-gamma, Nuclear receptor coactivator 1 peptide chimera, {3,5-dichloro-4-[4-methoxy-3-(propan-2-yl)phenoxy]phenyl}methanol
Authors:Sack, J.
Deposit date:2020-12-03
Release date:2021-01-20
Last modified:2023-10-18
Method:X-RAY DIFFRACTION (1.624 Å)
Cite:Substituted diaryl ether compounds as retinoic acid-related orphan Receptor-gamma t (ROR gamma t) agonists.
Bioorg.Med.Chem.Lett., 35, 2021
1S08
DownloadVisualize
BU of 1s08 by Molmil
Crystal Structure of the D147N Mutant of 7,8-Diaminopelargonic Acid Synthase
Descriptor: Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, SODIUM ION
Authors:Sandmark, J, Eliot, A.C, Famm, K, Schneider, G, Kirsch, J.F.
Deposit date:2003-12-30
Release date:2004-03-23
Last modified:2024-04-03
Method:X-RAY DIFFRACTION (2.1 Å)
Cite:Conserved and nonconserved residues in the substrate binding site of 7,8-diaminopelargonic acid synthase from Escherichia coli are essential for catalysis.
Biochemistry, 43, 2004
4K24
DownloadVisualize
BU of 4k24 by Molmil
Structure of anti-uPAR Fab ATN-658 in complex with uPAR
Descriptor: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Urokinase plasminogen activator surface receptor, ...
Authors:Huang, M.D, Xu, X, Yuan, C.
Deposit date:2013-04-08
Release date:2014-02-26
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (4.5 Å)
Cite:Identification of a New Epitope in uPAR as a Target for the Cancer Therapeutic Monoclonal Antibody ATN-658, a Structural Homolog of the uPAR Binding Integrin CD11b ( alpha M)
Plos One, 9, 2014
2ZBG
DownloadVisualize
BU of 2zbg by Molmil
Calcium pump crystal structure with bound AlF4 and TG in the absence of calcium
Descriptor: MAGNESIUM ION, OCTANOIC ACID [3S-[3ALPHA, 3ABETA, ...
Authors:Toyoshima, C, Ogawa, H, Norimatsu, Y.
Deposit date:2007-10-20
Release date:2007-12-11
Last modified:2024-10-16
Method:X-RAY DIFFRACTION (2.55 Å)
Cite:How processing of aspartylphosphate is coupled to lumenal gating of the ion pathway in the calcium pump
Proc.Natl.Acad.Sci.Usa, 104, 2007

226262

건을2024-10-16부터공개중

PDB statisticsPDBj update infoContact PDBjnumon