Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

2GII
DownloadVisualize
BU of 2gii by Molmil
Q138F HincII bound to cognate DNA GTTAAC
Descriptor: 5'-D(*GP*CP*CP*GP*GP*TP*TP*AP*AP*CP*CP*GP*GP*C)-3', Type II restriction enzyme HincII
Authors:Horton, N.C, Joshi, H.K.
Deposit date:2006-03-28
Release date:2006-07-18
Last modified:2024-02-14
Method:X-RAY DIFFRACTION (2.3 Å)
Cite:Alteration of Sequence Specificity of the Type II Restriction Endonuclease HincII through an Indirect Readout Mechanism.
J.Biol.Chem., 281, 2006
8HY9
DownloadVisualize
BU of 8hy9 by Molmil
Bacterial STING from Riemerella anatipestifer in complex with 3'3'-c-di-GMP
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), CALCIUM ION, CD-NTase-associated protein 12
Authors:Wang, Y.-C, Yang, C.-S, Hou, M.-H, Chen, Y.
Deposit date:2023-01-06
Release date:2024-01-10
Last modified:2024-01-24
Method:X-RAY DIFFRACTION (1.462 Å)
Cite:Structural insights into the regulation, ligand recognition, and oligomerization of bacterial STING.
Nat Commun, 14, 2023
6DNU
DownloadVisualize
BU of 6dnu by Molmil
Crystal Structure of Neisseria meningitidis DsbD c-terminal domain in the oxidised form
Descriptor: HEXAETHYLENE GLYCOL, Thiol:disulfide interchange protein DsbD
Authors:Heras, B, Smith, R.P, Paxman, J.J.
Deposit date:2018-06-07
Release date:2018-09-12
Last modified:2018-11-07
Method:X-RAY DIFFRACTION (2.283 Å)
Cite:Structural and biochemical insights into the disulfide reductase mechanism of DsbD, an essential enzyme for neisserial pathogens.
J. Biol. Chem., 293, 2018
4V5B
DownloadVisualize
BU of 4v5b by Molmil
Structure of PDF binding helix in complex with the ribosome.
Descriptor: 16S RIBOSOMAL RNA, 23S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, ...
Authors:Bingel-Erlenmeyer, R, Kohler, R, Kramer, G, Sandikci, A, Antolic, S, Maier, T, Schaffitzel, C, Wiedmann, B, Bukau, B, Ban, N.
Deposit date:2007-11-22
Release date:2014-07-09
Last modified:2024-02-07
Method:X-RAY DIFFRACTION (3.74 Å)
Cite:A Peptide Deformylase-Ribosome Complex Reveals Mechanism of Nascent Chain Processing.
Nature, 452, 2008
5AJ8
DownloadVisualize
BU of 5aj8 by Molmil
Tubulin Binding Cofactor C from Leishmania major
Descriptor: TUBULIN BINDING COFACTOR C
Authors:Barrack, K.L, Fyfe, P.K, Finney, A.J, Hunter, W.N.
Deposit date:2015-02-20
Release date:2015-04-15
Last modified:2015-08-26
Method:X-RAY DIFFRACTION (2.2 Å)
Cite:Crystal Structure of the C-Terminal Domain of Tubulin-Binding Cofactor C from Leishmania Major.
Mol.Biochem.Parasitol., 201, 2015
6LXN
DownloadVisualize
BU of 6lxn by Molmil
Crystal structure of C-terminal DNA-binding domain of Escherichia coli OmpR in complex with F1-DNA
Descriptor: DNA (27-MER), SULFATE ION, Transcriptional regulatory protein OmpR
Authors:Sadotra, S, Chen, C, Hsu, C.H.
Deposit date:2020-02-11
Release date:2020-12-23
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (2.93 Å)
Cite:Structural basis for promoter DNA recognition by the response regulator OmpR.
J.Struct.Biol., 213, 2020
3VC2
DownloadVisualize
BU of 3vc2 by Molmil
Crystal structure of geranyl diphosphate C-methyltransferase from Streptomyces coelicolor A3(2) in complex with Mg2+, geranyl diphosphate, and S-adenosyl-L-homocysteine
Descriptor: GERANYL DIPHOSPHATE, Geranyl diphosphate 2-C-methyltransferase, MAGNESIUM ION, ...
Authors:Koksal, M, Christianson, D.W.
Deposit date:2012-01-03
Release date:2012-04-11
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (2.046 Å)
Cite:Structure of Geranyl Diphosphate C-Methyltransferase from Streptomyces coelicolor and Implications for the Mechanism of Isoprenoid Modification.
Biochemistry, 51, 2012
2GE5
DownloadVisualize
BU of 2ge5 by Molmil
EcoRV Restriction Endonuclease C-terminal deletion mutant/GATATC/Ca2+
Descriptor: 5'-D(*AP*AP*AP*GP*AP*TP*AP*TP*CP*TP*T)-3', CALCIUM ION, Type II restriction enzyme EcoRV
Authors:Hiller, D.A, Perona, J.J.
Deposit date:2006-03-17
Release date:2006-07-04
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.4 Å)
Cite:Positively Charged C-Terminal Subdomains of EcoRV Endonuclease: Contributions to DNA Binding, Bending, and Cleavage.
Biochemistry, 45, 2006
3VRN
DownloadVisualize
BU of 3vrn by Molmil
Crystal structure of the tyrosine kinase binding domain of Cbl-c
Descriptor: CALCIUM ION, Signal transduction protein CBL-C
Authors:Takeshita, K, Tezuka, T, Isozaki, Y, Yamashita, E, Suzuki, M, Yamanashi, Y, Yamamoto, T, Nakagawa, A.
Deposit date:2012-04-13
Release date:2013-03-06
Last modified:2023-11-08
Method:X-RAY DIFFRACTION (1.64 Å)
Cite:Structural flexibility regulates phosphopeptide-binding activity of the tyrosine kinase binding domain of Cbl-c
J.Biochem., 152, 2012
4GNK
DownloadVisualize
BU of 4gnk by Molmil
Crystal structure of Galphaq in complex with full-length human PLCbeta3
Descriptor: 1-phosphatidylinositol 4,5-bisphosphate phosphodiesterase beta-3, CALCIUM ION, GUANOSINE-5'-DIPHOSPHATE, ...
Authors:Lyon, A.M, Tesmer, J.J.G.
Deposit date:2012-08-17
Release date:2013-02-06
Last modified:2023-09-13
Method:X-RAY DIFFRACTION (4 Å)
Cite:Full-length G alpha (q)-phospholipase C-beta 3 structure reveals interfaces of the C-terminal coiled-coil domain.
Nat.Struct.Mol.Biol., 20, 2013
2RF7
DownloadVisualize
BU of 2rf7 by Molmil
Crystal structure of the escherichia coli nrfa mutant Q263E
Descriptor: 1,2-ETHANEDIOL, CALCIUM ION, Cytochrome c-552, ...
Authors:Clarke, T.A, Richardson, D.J, Hemmings, A.M.
Deposit date:2007-09-28
Release date:2008-03-25
Last modified:2023-08-30
Method:X-RAY DIFFRACTION (2.04 Å)
Cite:Role of a Conserved Glutamine Residue in Tuning the Catalytic Activity of Escherichia coli Cytochrome c Nitrite Reductase.
Biochemistry, 47, 2008
2GLZ
DownloadVisualize
BU of 2glz by Molmil
Crystal structure of a formylmethanofuran dehydrogenase subunit e-like protein (dhaf_2992) from desulfitobacterium hafniense dcb-2 at 1.45 A resolution
Descriptor: 1,2-ETHANEDIOL, NICKEL (II) ION, ZINC ION, ...
Authors:Joint Center for Structural Genomics (JCSG)
Deposit date:2006-04-05
Release date:2006-04-18
Last modified:2023-01-25
Method:X-RAY DIFFRACTION (1.45 Å)
Cite:Structures of three members of Pfam PF02663 (FmdE) implicated in microbial methanogenesis reveal a conserved alpha+beta core domain and an auxiliary C-terminal treble-clef zinc finger.
Acta Crystallogr.,Sect.F, 66, 2010
4W1V
DownloadVisualize
BU of 4w1v by Molmil
Crystal structure of 7,8-diaminopelargonic acid synthase (BioA) from Mycobacterium tuberculosis, complexed with a thiazole inhibitor
Descriptor: 1,2-ETHANEDIOL, Adenosylmethionine-8-amino-7-oxononanoate aminotransferase, CHLORIDE ION, ...
Authors:Finzel, B.C, Dai, R.
Deposit date:2014-08-13
Release date:2015-02-04
Last modified:2023-12-27
Method:X-RAY DIFFRACTION (2.24 Å)
Cite:Target-Based Identification of Whole-Cell Active Inhibitors of Biotin Biosynthesis in Mycobacterium tuberculosis.
Chem.Biol., 22, 2015
7NCB
DownloadVisualize
BU of 7ncb by Molmil
Glutathione-S-transferase GliG mutant H26A
Descriptor: Glutathione S-transferase GliG
Authors:Groll, M, Huber, E.M.
Deposit date:2021-01-28
Release date:2021-05-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.85 Å)
Cite:Structural and Mechanistic Insights into C-S Bond Formation in Gliotoxin.
Angew.Chem.Int.Ed.Engl., 60, 2021
7NCM
DownloadVisualize
BU of 7ncm by Molmil
Glutathione-S-transferase GliG mutant E82A
Descriptor: 1,2-ETHANEDIOL, Glutathione S-transferase GliG
Authors:Groll, M, Huber, E.M.
Deposit date:2021-01-29
Release date:2021-05-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Mechanistic Insights into C-S Bond Formation in Gliotoxin.
Angew.Chem.Int.Ed.Engl., 60, 2021
7NCU
DownloadVisualize
BU of 7ncu by Molmil
Glutathione-S-transferase GliG mutant K127G in complex with oxidized glutathione
Descriptor: 1,2-ETHANEDIOL, Glutathione S-transferase GliG, OXIDIZED GLUTATHIONE DISULFIDE
Authors:Groll, M, Huber, E.M.
Deposit date:2021-01-29
Release date:2021-05-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.5 Å)
Cite:Structural and Mechanistic Insights into C-S Bond Formation in Gliotoxin.
Angew.Chem.Int.Ed.Engl., 60, 2021
7NC2
DownloadVisualize
BU of 7nc2 by Molmil
Glutathione-S-transferase GliG (space group P3221)
Descriptor: Glutathione S-transferase GliG
Authors:Groll, M, Huber, E.M.
Deposit date:2021-01-28
Release date:2021-05-12
Last modified:2024-01-31
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and Mechanistic Insights into C-S Bond Formation in Gliotoxin.
Angew.Chem.Int.Ed.Engl., 60, 2021
7NC1
DownloadVisualize
BU of 7nc1 by Molmil
Glutathione-S-transferase GliG with partially disordered active site
Descriptor: ACETATE ION, Glutathione S-transferase GliG
Authors:Groll, M, Huber, E.M.
Deposit date:2021-01-28
Release date:2021-05-12
Last modified:2024-05-15
Method:X-RAY DIFFRACTION (2.6 Å)
Cite:Structural and Mechanistic Insights into C-S Bond Formation in Gliotoxin.
Angew.Chem.Int.Ed.Engl., 60, 2021
6DNL
DownloadVisualize
BU of 6dnl by Molmil
Crystal Structure of Neisseria meningitidis DsbD c-terminal domain in the reduced form
Descriptor: ACETATE ION, Thiol:disulfide interchange protein DsbD, ZINC ION
Authors:Smith, R.P, Heras, B, Paxman, J.J.
Deposit date:2018-06-06
Release date:2018-09-12
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (1.7 Å)
Cite:Structural and biochemical insights into the disulfide reductase mechanism of DsbD, an essential enzyme for neisserial pathogens.
J. Biol. Chem., 293, 2018
5VX6
DownloadVisualize
BU of 5vx6 by Molmil
Structure of Bacillus subtilis Inhibitor of motility (MotI/DgrA)
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), Uncharacterized protein YpfA
Authors:Subramanian, S, Dann III, C.
Deposit date:2017-05-23
Release date:2017-11-22
Last modified:2024-03-13
Method:X-RAY DIFFRACTION (3.197 Å)
Cite:MotI (DgrA) acts as a molecular clutch on the flagellar stator protein MotA inBacillus subtilis.
Proc. Natl. Acad. Sci. U.S.A., 114, 2017
8CQM
DownloadVisualize
BU of 8cqm by Molmil
Broad-range phospholipase C from Listeria monocytogenes
Descriptor: FE (III) ION, GLYCEROL, Phospholipase C, ...
Authors:Petrisic, N, Podobnik, M.
Deposit date:2023-03-06
Release date:2023-10-18
Last modified:2023-10-25
Method:X-RAY DIFFRACTION (2 Å)
Cite:Structural basis for the unique molecular properties of broad-range phospholipase C from Listeria monocytogenes.
Nat Commun, 14, 2023
3CTN
DownloadVisualize
BU of 3ctn by Molmil
STRUCTURE OF CALCIUM-SATURATED CARDIAC TROPONIN C, NMR, 30 STRUCTURES
Descriptor: CALCIUM ION, TROPONIN C
Authors:Sia, S.K, Li, M.X, Spyracopoulos, L, Gagne, S.M, Liu, W, Putkey, J.A, Sykes, B.D.
Deposit date:1997-05-08
Release date:1998-05-13
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:Structure of cardiac muscle troponin C unexpectedly reveals a closed regulatory domain.
J.Biol.Chem., 272, 1997
1EKY
DownloadVisualize
BU of 1eky by Molmil
MODEL STRUCTURE FROM NON-NOE BASED NMR STRUCTURE CALCULATION
Descriptor: CYTOCHROME C', PROTOPORPHYRIN IX CONTAINING FE
Authors:Hus, J.C, Marion, D, Blackledge, M.
Deposit date:2000-03-10
Release date:2000-03-17
Last modified:2024-05-22
Method:SOLUTION NMR
Cite:De novo determination of protein structure by NMR using orientational and long-range order restraints.
J.Mol.Biol., 298, 2000
4URG
DownloadVisualize
BU of 4urg by Molmil
Crystal Structure of GGDEF domain from T.maritima (active-like dimer)
Descriptor: 9,9'-[(2R,3R,3aS,5S,7aR,9R,10R,10aS,12S,14aR)-3,5,10,12-tetrahydroxy-5,12-dioxidooctahydro-2H,7H-difuro[3,2-d:3',2'-j][1,3,7,9,2,8]tetraoxadiphosphacyclododecine-2,9-diyl]bis(2-amino-1,9-dihydro-6H-purin-6-one), DIGUANYLATE CYCLASE
Authors:Deepthi, A, Liew, C.W, Liang, Z.X, Swaminathan, K, Lescar, J.
Deposit date:2014-06-30
Release date:2014-10-08
Last modified:2024-01-10
Method:X-RAY DIFFRACTION (1.9 Å)
Cite:Structure of a Diguanylate Cyclase from Thermotoga Maritima: Insights Into Activation, Feedback Inhibition and Thermostability
Plos One, 9, 2014
7D5X
DownloadVisualize
BU of 7d5x by Molmil
Bovine heart cytochrome c oxidase in a catalytic intermediate, IO10, at 1.74 angstrom resolution
Descriptor: (1R)-2-{[{[(2S)-2,3-DIHYDROXYPROPYL]OXY}(HYDROXY)PHOSPHORYL]OXY}-1-[(PALMITOYLOXY)METHYL]ETHYL (11E)-OCTADEC-11-ENOATE, (1S)-2-{[(2-AMINOETHOXY)(HYDROXY)PHOSPHORYL]OXY}-1-[(STEAROYLOXY)METHYL]ETHYL (5E,8E,11E,14E)-ICOSA-5,8,11,14-TETRAENOATE, (7R,17E,20E)-4-HYDROXY-N,N,N-TRIMETHYL-9-OXO-7-[(PALMITOYLOXY)METHYL]-3,5,8-TRIOXA-4-PHOSPHAHEXACOSA-17,20-DIEN-1-AMINIUM 4-OXIDE, ...
Authors:Tsukihara, T, Shimada, A.
Deposit date:2020-09-28
Release date:2021-07-21
Last modified:2023-11-29
Method:X-RAY DIFFRACTION (1.74 Å)
Cite:Critical roles of the Cu B site in efficient proton pumping as revealed by crystal structures of mammalian cytochrome c oxidase catalytic intermediates.
J.Biol.Chem., 297, 2021

222624

건을2024-07-17부터공개중

PDB statisticsPDBj update infoContact PDBjnumon