PDB: 1477 件ウェブページステータス検索Chemie searchBIRD

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3BBU	The Hsp15 protein fitted into the low resolution Cryo-EM map of the 50S.nc-tRNA.Hsp15 complex 分子名称: Heat Shock Protein 15 著者 Jiang, L, Abrahams, J.P. 登録日 2007-11-11 公開日 2008-10-21 最終更新日 2024-02-21 実験手法 ELECTRON MICROSCOPY (10 Å) 主引用文献 Recycling of Aborted Ribosomal 50S Subunit-Nascent Chain-tRNA Complexes by the Heat Shock Protein Hsp15. J.Mol.Biol., 386, 2009
2K6P	Solution Structure of hypothetical protein, HP1423 分子名称: Uncharacterized protein HP_1423 著者 Kim, J, Park, S, Lee, K, Son, W, Sohn, N, Lee, B. 登録日 2008-07-15 公開日 2009-06-16 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of hypothetical protein HP1423 (Y1423_HELPY) reveals the presence of alphaL motif related to RNA binding Proteins, 75, 2009
2CQJ	Solution structure of the S4 domain of U3 small nucleolar ribonucleoprotein protein IMP3 homolog 分子名称: U3 small nucleolar ribonucleoprotein protein IMP3 homolog 著者 Suzuki, S, Muto, Y, Inoue, M, Kigawa, T, Terada, T, Shirouzu, M, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2005-05-20 公開日 2005-11-20 最終更新日 2024-05-29 実験手法 SOLUTION NMR 主引用文献 Solution structure of the S4 domain of U3 small nucleolar ribonucleoprotein protein IMP3 homolog To be Published
1DM9	HEAT SHOCK PROTEIN 15 KD 分子名称: HYPOTHETICAL 15.5 KD PROTEIN IN MRCA-PCKA INTERGENIC REGION, SULFATE ION 著者 Staker, B.L, Korber, P, Bardwell, J.C.A, Saper, M.A. 登録日 1999-12-14 公開日 2000-02-18 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Structure of Hsp15 reveals a novel RNA-binding motif. EMBO J., 19, 2000
5Z81	Trimeric structure of Vibrio cholerae Heat Shock Protein 15 at 2.3 Angstrom resolution 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, Heat shock protein 15, SULFATE ION 著者 Roy Chowdhury, S, Sen, U. 登録日 2018-01-30 公開日 2018-03-07 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.334 Å) 主引用文献 Trimeric structure of Vibrio cholerae Heat Shock Protein 15 at 2.3 Angstrom resolution To Be Published
3HP7	Putative hemolysin from Streptococcus thermophilus. 分子名称: ETHANOL, Hemolysin, putative 著者 Osipiuk, J, Hatzos, C, Cobb, G, Joachimiak, A, Midwest Center for Structural Genomics (MCSG) 登録日 2009-06-03 公開日 2009-06-16 最終更新日 2017-11-01 実験手法 X-RAY DIFFRACTION (1.53 Å) 主引用文献 X-ray crystal structure of putative hemolysin from Streptococcus thermophilus. To be Published
9FBV	70S Escherichia coli ribosome with P-site initiatior tRNA. 分子名称: 16S ribosomal RNA, 23S ribosomal RNA, 30S ribosomal protein S16, ... 著者 Koller, T.O, Wilson, D.N. 登録日 2024-05-14 公開日 2024-06-26 実験手法 ELECTRON MICROSCOPY (2.4 Å) 主引用文献 Paenilamicins from the honey bee pathogen Paenibacillus larvae are context-specific translocation inhibitors of protein synthesis. Biorxiv, 2024
6KE6	3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome 分子名称: 13 kDa ribonucleoprotein-associated protein, 18S rRNA, 40S ribosomal protein S1-A, ... 著者 Du, Y, Ye, K, An, W. 登録日 2019-07-03 公開日 2020-08-05 最終更新日 2024-03-27 実験手法 ELECTRON MICROSCOPY (3.4 Å) 主引用文献 3.4 angstrom cryo-EM structure of yeast 90S small subunit preribosome To be published
2YKR	30S ribosomal subunit with RsgA bound in the presence of GMPPNP 分子名称: 16S RRNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Guo, Q, Yuan, Y, Xu, Y, Feng, B, Liu, L, Chen, K, Lei, J, Gao, N. 登録日 2011-05-30 公開日 2011-08-24 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (9.8 Å) 主引用文献 Structural Basis for the Function of a Small Gtpase Rsga on the 30S Ribosomal Subunit Maturation Revealed by Cryoelectron Microscopy. Proc.Natl.Acad.Sci.USA, 108, 2011
3OTO	Crystal Structure of the 30S ribosomal subunit from a KsgA mutant of Thermus thermophilus (HB8) 分子名称: 16S rRNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Demirci, H, Murphy IV, F, Belardinelli, R, Kelley, A.C, Ramakrishnan, V, Gregory, S.T, Dahlberg, A.E, Jogl, G. 登録日 2010-09-13 公開日 2010-09-29 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (3.69 Å) 主引用文献 Modification of 16S ribosomal RNA by the KsgA methyltransferase restructures the 30S subunit to optimize ribosome function. Rna, 16, 2010
3DH3	Crystal Structure of RluF in complex with a 22 nucleotide RNA substrate 分子名称: Ribosomal large subunit pseudouridine synthase F, stem loop fragment of E. Coli 23S RNA 著者 Alian, A, DeGiovanni, A, Stroud, R.M, Finer-Moore, J.S. 登録日 2008-06-16 公開日 2009-04-28 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Crystal structure of an RluF-RNA complex: a base-pair rearrangement is the key to selectivity of RluF for U2604 of the ribosome. J.Mol.Biol., 388, 2009
1VY5	Crystal structure of the Thermus thermophilus 70S ribosome in the post-catalysis state of peptide bond formation containing dipeptydil-tRNA in the A site and deacylated tRNA in the P site. 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Polikanov, Y.S, Steitz, T.A, Innis, C.A. 登録日 2014-05-13 公開日 2014-08-20 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.55 Å) 主引用文献 A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome. Nat.Struct.Mol.Biol., 21, 2014
1VY4	Crystal structure of the Thermus thermophilus 70S ribosome in the pre-attack state of peptide bond formation containing acylated tRNA-substrates in the A and P sites. 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Polikanov, Y.S, Steitz, T.A, Innis, C.A. 登録日 2014-05-13 公開日 2014-08-20 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 A proton wire to couple aminoacyl-tRNA accommodation and peptide-bond formation on the ribosome. Nat.Struct.Mol.Biol., 21, 2014
6D9J	Mammalian 80S ribosome with a double translocated CrPV-IRES, P-sitetRNA and eRF1. 分子名称: 18S rRNA, 28S rRNA, 5.8S rRNA, ... 著者 Pisareva, V.P, Pisarev, A.V, Fernandez, I.S. 登録日 2018-04-30 公開日 2018-06-06 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Dual tRNA mimicry in the Cricket Paralysis Virus IRES uncovers an unexpected similarity with the Hepatitis C Virus IRES. Elife, 7, 2018
1N33	Structure of the Thermus thermophilus 30S ribosomal subunit bound to codon and near-cognate transfer rna anticodon stem-loop mismatched at the second codon position at the a site with paromomycin 分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Ogle, J.M, Murphy IV, F.V, Tarry, M.J, Ramakrishnan, V. 登録日 2002-10-25 公開日 2002-11-29 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form Cell(Cambridge,Mass.), 111, 2002
1N36	Structure of the Thermus thermophilus 30S ribosomal subunit in the presence of crystallographically disordered codon and near-cognate transfer RNA anticodon stem-loop mismatched at the second codon position 分子名称: 16S RIBOSOMAL RNA, 30S RIBOSOMAL PROTEIN S10, 30S RIBOSOMAL PROTEIN S11, ... 著者 Ogle, J.M, Murphy IV, F.V, Tarry, M.J, Ramakrishnan, V. 登録日 2002-10-25 公開日 2002-11-29 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.65 Å) 主引用文献 Selection of tRNA by the Ribosome Requires a Transition from an Open to a Closed Form Cell(Cambridge,Mass.), 111, 2002
6DTI	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with an unmodifed anticodon stem loop (ASL) of Escherichia coli transfer RNA Arginine 2 (TRNAARG2) bound to an mRNA with an CGU-codon in the A-site and paromomycin 分子名称: 16s rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Cantara, W.A, DeMirci, H, Agris, P.F. 登録日 2018-06-16 公開日 2019-04-24 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (3.54 Å) 主引用文献 A Structural Basis for Restricted Codon Recognition Mediated by 2-thiocytidine in tRNA Containing a Wobble Position Inosine. J.Mol.Biol., 432, 2020
1C05	SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S4 DELTA 41, REFINED WITH DIPOLAR COUPLINGS (MINIMIZED AVERAGE STRUCTURE) 分子名称: RIBOSOMAL PROTEIN S4 DELTA 41 著者 Markus, M.A, Gerstner, R.B, Draper, D.E, Torchia, D.A. 登録日 1999-07-14 公開日 1999-09-29 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 Refining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases. J.Mol.Biol., 292, 1999
1C06	SOLUTION STRUCTURE OF RIBOSOMAL PROTEIN S4 DELTA 41, REFINED WITH DIPOLAR COUPLINGS (ENSEMBLE OF 16 STRUCTURES) 分子名称: RIBOSOMAL PROTEIN S4 DELTA 41 著者 Markus, M.A, Gerstner, R.B, Draper, D.E, Torchia, D.A. 登録日 1999-07-14 公開日 1999-09-29 最終更新日 2024-04-10 実験手法 SOLUTION NMR 主引用文献 Refining the overall structure and subdomain orientation of ribosomal protein S4 delta41 with dipolar couplings measured by NMR in uniaxial liquid crystalline phases. J.Mol.Biol., 292, 1999
3T1Y	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA Lysine 3 (TRNALYS3) bound to an mRNA with an AAG-codon in the A-site and paromomycin 分子名称: 16S rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Murphy, F.V, Vendeix, F.A.P, Cantara, W, Leszczynska, G, Gustilo, E.M, Sproat, B, Malkiewicz, A.A.P, Agris, P.F. 登録日 2011-07-22 公開日 2012-01-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Human tRNA(Lys3)(UUU) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism. J.Mol.Biol., 416, 2012
3T1H	Structure of the Thermus thermophilus 30S ribosomal subunit complexed with a human anti-codon stem loop (HASL) of transfer RNA lysine 3 (tRNALys3) bound to an mRNA with an AAA-codon in the A-site and Paromomycin 分子名称: 16s rRNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Murphy, F.V, Vendeix, F.A.P, Cantara, W, Leszczynska, G, Gustilo, E.M, Sproat, B, Malkiewicz, A.A.P, Agris, P.F. 登録日 2011-07-21 公開日 2012-01-25 最終更新日 2023-09-13 実験手法 X-RAY DIFFRACTION (3.11 Å) 主引用文献 Human tRNA(Lys3)(UUU) Is Pre-Structured by Natural Modifications for Cognate and Wobble Codon Binding through Keto-Enol Tautomerism. J.Mol.Biol., 416, 2012
2ZM6	Crystal structure of the Thermus thermophilus 30S ribosomal subunit 分子名称: 16S ribosomal RNA, 30S ribosomal protein S10, 30S ribosomal protein S11, ... 著者 Kaminishi, T, Wang, H, Kawazoe, M, Ishii, R, Schluenzen, F, Hanawa-Suetsugu, K, Wilson, D.N, Nomura, M, Takemoto, C, Shirouzu, M, Fucini, P, Yokoyama, S, RIKEN Structural Genomics/Proteomics Initiative (RSGI) 登録日 2008-04-11 公開日 2009-04-14 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (3.3 Å) 主引用文献 Crystal structure of the Thermus thermophilus 30S ribosomal subunit To be Published
5VPP	The 70S P-site tRNA SufA6 complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2017-05-05 公開日 2018-09-26 最終更新日 2018-11-07 実験手法 X-RAY DIFFRACTION (3.9 Å) 主引用文献 Mechanism of tRNA-mediated +1 ribosomal frameshifting. Proc. Natl. Acad. Sci. U.S.A., 115, 2018
5VYC	Crystal structure of the human 40S ribosomal subunit in complex with DENR-MCT-1. 分子名称: 40S ribosomal protein S10, 40S ribosomal protein S11, 40S ribosomal protein S12, ... 著者 Lomakin, I.B, Stolboushkina, E.A, Vaidya, A.T, Garber, M.B, Dmitriev, S.E, Steitz, T.A. 登録日 2017-05-24 公開日 2017-07-19 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (6 Å) 主引用文献 Crystal Structure of the Human Ribosome in Complex with DENR-MCT-1. Cell Rep, 20, 2017
5VPO	The 70S P-site ASL SufA6 complex 分子名称: 16S rRNA, 23S rRNA, 30S ribosomal protein S10, ... 著者 Hong, S, Sunita, S, Dunkle, J.A, Maehigashi, T, Dunham, C.M. 登録日 2017-05-05 公開日 2018-09-26 最終更新日 2018-11-07 実験手法 X-RAY DIFFRACTION (3.34 Å) 主引用文献 Mechanism of tRNA-mediated +1 ribosomal frameshifting. Proc. Natl. Acad. Sci. U.S.A., 115, 2018

 

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