PDB: 47011 件ウェブページステータス検索Chemie searchBIRD

---

129D	DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') COMPLEXED WITH HOECHST 33342 分子名称: 2'-(4-ETHOXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Sriram, M, Van Der Marel, G.A, Roelen, H.L.P.F, Van Boom, J.H, Wang, A.H.-J. 登録日 1993-06-30 公開日 1994-01-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Conformation of B-DNA containing O6-ethyl-G-C base pairs stabilized by minor groove binding drugs: molecular structure of d(CGC[e6G]AATTCGCG complexed with Hoechst 33258 or Hoechst 33342. EMBO J., 11, 1992
127D	DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') COMPLEXED WITH HOECHST 33258 分子名称: 2'-(4-HYDROXYPHENYL)-5-(4-METHYL-1-PIPERAZINYL)-2,5'-BI-BENZIMIDAZOLE, DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*GP*CP*G)-3') 著者 Sriram, M, Van Der Marel, G.A, Roelen, H.L.P.F, Van Boom, J.H, Wang, A.H.-J. 登録日 1993-06-30 公開日 1994-01-15 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Conformation of B-DNA containing O6-ethyl-G-C base pairs stabilized by minor groove binding drugs: molecular structure of d(CGC[e6G]AATTCGCG complexed with Hoechst 33258 or Hoechst 33342. EMBO J., 11, 1992
7CD5	mAPE1-blunt-ended dsDNA product complex 分子名称: DNA(5'-D(*CP*GP*TP*AP*AP*TP*AP*CP*G)-3'), DNA-(apurinic or apyrimidinic site) endonuclease 著者 Liu, T.C, Hsiao, Y.Y. 登録日 2020-06-18 公開日 2021-01-13 最終更新日 2023-11-29 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 APE1 distinguishes DNA substrates in exonucleolytic cleavage by induced space-filling. Nat Commun, 12, 2021
8KGS	Structure of African swine fever virus topoisomerase II in complex with dsDNA 分子名称: DNA topoisomerase 2, MAGNESIUM ION, PHOSPHOAMINOPHOSPHONIC ACID-ADENYLATE ESTER 著者 Cong, J, Xin, Y, Li, X, Chen, Y. 登録日 2023-08-19 公開日 2024-04-03 最終更新日 2024-08-14 実験手法 X-RAY DIFFRACTION (2.603 Å) 主引用文献 Structural insights into the DNA topoisomerase II of the African swine fever virus. Nat Commun, 15, 2024
1MHT	COVALENT TERNARY STRUCTURE OF HHAI METHYLTRANSFERASE, DNA AND S-ADENOSYL-L-HOMOCYSTEINE 分子名称: DNA (5'-D(*TP*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*AP*GP*(C36)P*GP*CP*TP*AP*TP*C)-3'), PROTEIN (HHAI METHYLTRANSFERASE), ... 著者 Cheng, X. 登録日 1994-12-08 公開日 1995-06-03 最終更新日 2024-11-06 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 HhaI methyltransferase flips its target base out of the DNA helix. Cell(Cambridge,Mass.), 76, 1994
7R6R	Crystal Structure of a Mycobacteriophage Cluster A2 Immunity Repressor:DNA Complex 分子名称: DNA (5'-D(P*CP*CP*CP*GP*CP*TP*TP*GP*AP*CP*AP*GP*CP*CP*AP*CP*CP*GP*AP*AP*A)-3'), DNA (5'-D(P*TP*TP*TP*CP*GP*GP*TP*GP*GP*CP*TP*GP*TP*CP*AP*AP*GP*CP*GP*GP*G)-3'), Immunity repressor 著者 McGinnis, R.J, Brambley, C.A, Stamey, B, Green, W.C, Gragg, K.N, Cafferty, E.R, Terwilliger, T.C, Hammel, M, Hollis, T.J, Miller, J.M, Gainey, M.D, Wallen, J.R. 登録日 2021-06-23 公開日 2022-07-20 最終更新日 2023-10-18 実験手法 X-RAY DIFFRACTION (3.13 Å) 主引用文献 A monomeric mycobacteriophage immunity repressor utilizes two domains to recognize an asymmetric DNA sequence. Nat Commun, 13, 2022
3S4Z	Structure of a Y DNA-FANCI complex 分子名称: dna repair 1 著者 Pavletich, N.P. 登録日 2011-05-20 公開日 2011-07-27 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (7.8 Å) 主引用文献 Structure of the FANCI-FANCD2 complex: insights into the Fanconi anemia DNA repair pathway. Science, 333, 2011
1BHM	RESTRICTION ENDONUCLEASE BAMHI COMPLEX WITH DNA 分子名称: DNA (5'-D(*TP*AP*TP*GP*GP*AP*TP*CP*CP*AP*TP*A)-3'), PROTEIN (BAMHI (E.C.3.1.21.4)) 著者 Aggarwal, A.K, Newman, M. 登録日 1995-07-12 公開日 1995-07-12 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Structure of Bam HI endonuclease bound to DNA: partial folding and unfolding on DNA binding. Science, 269, 1995
1NH9	Crystal Structure of a DNA Binding Protein Mja10b from the hyperthermophile Methanococcus jannaschii 分子名称: DNA-binding protein Alba 著者 Wang, G, Bartlam, M, Guo, R, Yang, H, Xue, H, Liu, Y, Huang, L, Rao, Z. 登録日 2002-12-19 公開日 2003-12-23 最終更新日 2023-10-25 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Crystal structure of a DNA binding protein from the hyperthermophilic euryarchaeon Methanococcus jannaschii Protein Sci., 12, 2003
167D	THE CRYSTAL STRUCTURE OF C-C-A-T-T-A-A-T-G-G: IMPLICATIONS FOR BENDING OF B-DNA AT T-A STEPS 分子名称: DNA (5'-D(*CP*CP*AP*TP*TP*AP*AP*TP*GP*G)-3') 著者 Goodsell, D.S, Kaczor-Grzeskowiak, M, Dickerson, R.E. 登録日 1994-04-04 公開日 1994-08-31 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 The crystal structure of C-C-A-T-T-A-A-T-G-G. Implications for bending of B-DNA at T-A steps. J.Mol.Biol., 239, 1994
4PE8	Crystal structure of TatD in complex with trinucleotide DNA 分子名称: DNA (5'-D(*GP*CP*T)-3'), Tat-linked quality control protein TatD 著者 Chen, Y, Li, C.-L, Hsiao, Y.-Y, Duh, Y, Yuan, H.S. 登録日 2014-04-23 公開日 2014-08-27 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.894 Å) 主引用文献 Structure and function of TatD exonuclease in DNA repair. Nucleic Acids Res., 42, 2014
5ZEN	Crystal structure of human topoisomerase II beta in complex with DNA: a new quaternary conformation showing opening of the protein-linked DNA-gate 分子名称: DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3'), DNA (5'-D(P*AP*GP*CP*TP*CP*GP*GP*CP*T)-3'), DNA topoisomerase 2-beta, ... 著者 Chen, S.F, Wang, Y.R, Chan, N.L. 登録日 2018-02-27 公開日 2018-08-08 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 Structural insights into the gating of DNA passage by the topoisomerase II DNA-gate. Nat Commun, 9, 2018
5ZQF	Crystal structure of human topoisomerase II beta in complex with 5-iodouridine-containing-DNA in space group P3221 分子名称: DNA (5'-D(P*AP*GP*CP*CP*GP*AP*GP*C)-3'), DNA topoisomerase 2-beta, DNA/RNA (5'-D(P*AP*GP*C)-R(P*(IU))-D(P*CP*GP*GP*C)-R(P*(IU))-3'), ... 著者 Chen, S.F, Wang, Y.R, Chan, N.L. 登録日 2018-04-18 公開日 2018-08-08 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.873 Å) 主引用文献 Structural insights into the gating of DNA passage by the topoisomerase II DNA-gate. Nat Commun, 9, 2018
2LD5	Solution NMR-derived complex structure of Hoxa13 DNA binding domain bound to DNA 分子名称: DNA (5'-D(*CP*AP*AP*AP*TP*AP*AP*AP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*TP*TP*TP*AP*TP*TP*TP*G)-3'), Homeobox protein Hox-A13 著者 Zhang, Y. 登録日 2011-05-14 公開日 2011-08-10 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural basis for sequence specific DNA binding and protein dimerization of HOXA13. Plos One, 6, 2011
3BSU	Hybrid-binding domain of human RNase H1 in complex with 12-mer RNA/DNA 分子名称: DNA (5'-D(*DGP*DAP*DAP*DTP*DCP*DAP*DGP*DGP*(5IU)P*DGP*DTP*DC)-3'), MAGNESIUM ION, RNA (5'-R(*GP*AP*CP*AP*CP*CP*UP*GP*AP*UP*UP*C)-3'), ... 著者 Nowotny, M, Cerritelli, S.M, Ghirlando, R, Gaidamakov, S.A, Crouch, R.J, Yang, W. 登録日 2007-12-26 公開日 2008-03-25 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Specific recognition of RNA/DNA hybrid and enhancement of human RNase H1 activity by HBD. Embo J., 27, 2008
3BVS	Crystal Structure of Bacillus cereus Alkylpurine DNA Glycosylase AlkD 分子名称: Alkylpurine DNA Glycosylase AlkD 著者 Rubinson, E.H, Eichman, B.F. 登録日 2008-01-07 公開日 2008-07-15 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 A New Protein Architecture for Processing Alkylation Damaged DNA: The Crystal Structure of DNA Glycosylase AlkD. J.Mol.Biol., 381, 2008
6ZT3	N-terminal 47 kDa fragment of the Mycobacterium smegmatis DNA Gyrase B subunit complexed with ADPNP 分子名称: 1,2-ETHANEDIOL, DNA gyrase subunit B, MAGNESIUM ION, ... 著者 Feng, L, Mundy, J.E.A, Stevenson, C.E.M, Mitchenall, L.A, Lawson, D.M, Mi, K, Maxwell, A. 登録日 2020-07-17 公開日 2021-03-03 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (1.56 Å) 主引用文献 The pentapeptide-repeat protein, MfpA, interacts with mycobacterial DNA gyrase as a DNA T-segment mimic. Proc.Natl.Acad.Sci.USA, 118, 2021
101D	REFINEMENT OF NETROPSIN BOUND TO DNA: BIAS AND FEEDBACK IN ELECTRON DENSITY MAP INTERPRETATION 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3'), MAGNESIUM ION, NETROPSIN 著者 Goodsell, D.S, Kopka, M.L, Dickerson, R.E. 登録日 1994-12-14 公開日 1995-02-27 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Refinement of netropsin bound to DNA: bias and feedback in electron density map interpretation. Biochemistry, 34, 1995
5CQK	Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B 分子名称: DNA dC->dU-editing enzyme APOBEC-3B, GLYCEROL, SODIUM ION, ... 著者 Shi, K, Kurahashi, K, Aihara, H. 登録日 2015-07-21 公開日 2015-10-07 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.88 Å) 主引用文献 Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain. J.Biol.Chem., 290, 2015
5CQI	Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B 分子名称: DNA dC-dU-editing enzyme APOBEC-3B, GLYCEROL, ZINC ION 著者 Shi, K, Kurahashi, K, Aihara, H. 登録日 2015-07-21 公開日 2015-10-07 最終更新日 2024-03-06 実験手法 X-RAY DIFFRACTION (1.68 Å) 主引用文献 Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain. J.Biol.Chem., 290, 2015
8OLX	MutSbeta bound to (CAG)2 DNA (canonical form) 分子名称: ADENOSINE-5'-DIPHOSPHATE, DNA (25-MER), DNA mismatch repair protein Msh2, ... 著者 Lee, J.-H, Thomsen, M, Daub, H, Steinbacher, S, Sztyler, A, Thieulin-Pardo, G, Neudegger, T, Plotnikov, N, Iyer, R.R, Wilkinson, H, Monteagudo, E, Felsenfeld, D.P, Haque, T, Finley, M, Dominguez, C, Vogt, T.F, Prasad, B.C. 登録日 2023-03-30 公開日 2023-05-24 最終更新日 2024-07-24 実験手法 ELECTRON MICROSCOPY (3.1 Å) 主引用文献 MutSbeta bound to (CAG)2 DNA (canonical form) To Be Published
2SSP	LEUCINE-272-ALANINE URACIL-DNA GLYCOSYLASE BOUND TO ABASIC SITE-CONTAINING DNA 分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*TP*AP*AP*CP*AP*G)-3'), DNA (5'-D(*CP*TP*GP*TP*(AAB)P*AP*TP*CP*TP*T)-3'), PROTEIN (URACIL-DNA GLYCOSYLASE) 著者 Parikh, S.S, Mol, C.D, Slupphaug, G, Bharati, S, Krokan, H.E, Tainer, J.A. 登録日 1999-04-28 公開日 1999-05-06 最終更新日 2023-08-02 実験手法 X-RAY DIFFRACTION (2.25 Å) 主引用文献 Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA. EMBO J., 17, 1998
5CQD	Crystal Structure of the Cancer Genomic DNA Mutator APOBEC3B 分子名称: DNA dC->dU-editing enzyme APOBEC-3B, GLYCEROL, ZINC ION 著者 Shi, K, Kurahashi, K, Aihara, H. 登録日 2015-07-21 公開日 2015-10-07 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.08 Å) 主引用文献 Crystal Structure of the DNA Deaminase APOBEC3B Catalytic Domain. J.Biol.Chem., 290, 2015
5X6M	Crystal Structure of SMAD5-MH1 in complex with a composite DNA sequence 分子名称: DNA (5'-D(P*AP*TP*CP*AP*GP*AP*CP*TP*GP*CP*CP*GP*GP*CP*AP*GP*TP*CP*TP*AP*TP*A)-3'), DNA (5'-D(P*TP*TP*AP*TP*AP*GP*AP*CP*TP*GP*CP*CP*GP*GP*CP*AP*GP*TP*CP*TP*GP*A)-3'), Mothers against decapentaplegic homolog 5, ... 著者 Chai, N, Wang, J, Wang, Z.X, Wu, J.W. 登録日 2017-02-22 公開日 2017-03-15 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural basis for the Smad5 MH1 domain to recognize different DNA sequences. Nucleic Acids Res., 43, 2015
1SJK	A DUPLEX DNA WITH AN ABASIC SITE IN A DA TRACT, ALPHA FORM, NMR, MINIMIZED AVERAGE STRUCTURE 分子名称: DNA (5'-D(*CP*GP*CP*AP*AP*AP*AP*AP*TP*GP*CP*G)-3'), DNA (5'-D(*CP*GP*CP*AP*TP*TP*ORPP*TP*TP*GP*CP*G)-3') 著者 Wang, K.Y, Parker, S.A, Goljer, I, Bolton, P.H. 登録日 1997-07-22 公開日 1997-12-03 最終更新日 2024-05-22 実験手法 SOLUTION NMR 主引用文献 Solution structure of a duplex DNA with an abasic site in a dA tract. Biochemistry, 36, 1997

<919293949596979899100101102103104105106>