PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

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2ZCJ	Ternary structure of the Glu119Gln M.HhaI, C5-Cytosine DNA methyltransferase, with unmodified DNA and AdoHcy 分子名称: DNA (5'-D(*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), DNA (5'-D(*DTP*DGP*DAP*DTP*DAP*DGP*DCP*DGP*DCP*DTP*DAP*DTP*DC)-3'), Modification methylase HhaI, ... 著者 Shieh, F.K, Reich, N.O. 登録日 2007-11-09 公開日 2007-12-04 最終更新日 2024-05-29 実験手法 X-RAY DIFFRACTION (2.75 Å) 主引用文献 AdoMet-dependent Methyl-transfer: Glu(119) Is Essential for DNA C5-Cytosine Methyltransferase M.HhaI J.Mol.Biol., 373, 2007
2MOE	Solution structure of MBD4 methyl-cytosine binding domain bound to methylated DNA 分子名称: DNA (5'-D(*GP*AP*GP*CP*(5CM)P*GP*AP*TP*CP*C)-3'), DNA (5'-D(*GP*GP*AP*TP*(5CM)P*GP*GP*CP*TP*C)-3'), Methyl-CpG-binding domain protein 4 著者 Williams, D.C, Walavalkar, N.M. 登録日 2014-04-24 公開日 2014-09-10 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Solution structure and intramolecular exchange of methyl-cytosine binding domain protein 4 (MBD4) on DNA suggests a mechanism to scan for mCpG/TpG mismatches. Nucleic Acids Res., 42, 2015
2OXM	Crystal structure of a UNG2/modified DNA complex that represent a stabilized short-lived extrahelical state in ezymatic DNA base flipping 分子名称: DNA (5'-D(*AP*AP*AP*GP*AP*TP*(4MF)P*AP*CP*A)-3'), DNA (5'-D(*TP*GP*TP*TP*AP*TP*CP*TP*T)-3'), Uracil-DNA glycosylase 著者 Bianchet, M.A, Krosky, D.J, Stivers, J.T, Amzel, L.M. 登録日 2007-02-20 公開日 2007-10-30 最終更新日 2023-08-30 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Enzymatic capture of an extrahelical thymine in the search for uracil in DNA. Nature, 449, 2007
1LQJ	ESCHERICHIA COLI URACIL-DNA GLYCOSYLASE 分子名称: URACIL-DNA GLYCOSYLASE 著者 Saikrishnan, K, Sagar, M.B, Ravishankar, R, Roy, S, Purnapatre, K, Varshney, U, Vijayan, M. 登録日 2002-05-10 公開日 2002-11-10 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (3.35 Å) 主引用文献 Domain closure and action of uracil DNA glycosylase (UDG): structures of new crystal forms containing the Escherichia coli enzyme and a comparative study of the known structures involving UDG. Acta Crystallogr.,Sect.D, 58, 2002
1MW9	Crystal Structure of H365R mutant of 67 kDA N-terminal fragment of E. coli DNA Topoisomerase I 分子名称: DNA Topoisomerase I, SULFATE ION 著者 Perry, K, Mondragon, A. 登録日 2002-09-27 公開日 2003-10-14 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (1.67 Å) 主引用文献 Structure of a Complex between E. coli DNA Topoisomerase I and Single-Stranded DNA. Structure, 11, 2003
3P16	Crystal structure of DNA polymerase III sliding clamp 分子名称: DNA polymerase III subunit beta 著者 Gui, W.J, Lin, S.Q, Chen, Y.Y, Zhang, X.E, Bi, L.J, Jiang, T. 登録日 2010-09-30 公開日 2011-08-24 最終更新日 2023-11-01 実験手法 X-RAY DIFFRACTION (2.89 Å) 主引用文献 Crystal structure of DNA polymerase III beta sliding clamp from Mycobacterium tuberculosis. Biochem.Biophys.Res.Commun., 405, 2011
6HB4	TFAM in Complex with Site-Y 分子名称: DNA (5'*CP*TP*GP*TP*GP*CP*AP*GP*AP*CP*AP*TP*TP*CP*AP*AP*TP*TP*GP*TP*TP*A)-3'), DNA (5'-D(*TP*AP*AP*CP*AP*AP*TP*TP*GP*AP*AP*TP*GP*TP*CP*TP*GP*CP*AP*CP*AP*G)-3'), GLYCEROL, ... 著者 Cuppari, A, Fernandez-Millan, P, Rubio-Cosials, A, Tarres-Sole, A, Lyonnais, S, Sola, M. 登録日 2018-08-09 公開日 2019-06-05 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (3.05 Å) 主引用文献 DNA specificities modulate the binding of human transcription factor A to mitochondrial DNA control region. Nucleic Acids Res., 47, 2019
1A31	HUMAN RECONSTITUTED DNA TOPOISOMERASE I IN COVALENT COMPLEX WITH A 22 BASE PAIR DNA DUPLEX 分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*5IUP*5IU*TP*GP*AP*AP*AP*AP*AP*5IUP*5IUP*5IUP*5IUP*T)-3'), DNA (5'-D(*AP*AP*AP*AP*AP*TP*5IUP*5IUP*5IUP*5IUP*CP*AP*AP*AP*GP*TP*CP*TP*TP*TP*TP*T)-3'), PROTEIN (TOPOISOMERASE I) 著者 Redinbo, M.R, Stewart, L, Kuhn, P, Champoux, J.J, Hol, W.G.J. 登録日 1998-01-27 公開日 1998-08-28 最終更新日 2011-07-13 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA. Science, 279, 1998
188D	HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION 分子名称: DNA (5'-D(*GP*GP*GP*CP*GP*CP*CP*C)-3') 著者 Eisenstein, M, Shakked, Z. 登録日 1994-09-02 公開日 1995-02-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition. J.Mol.Biol., 248, 1995
189D	HYDRATION PATTERNS AND INTERMOLECULAR INTERACTIONS IN A-DNA CRYSTAL STRUCTURES. IMPLICATIONS FOR DNA RECOGNITION 分子名称: DNA (5'-D(*GP*GP*CP*CP*GP*GP*CP*C)-3') 著者 Eisenstein, M, Shakked, Z. 登録日 1994-09-02 公開日 1995-02-07 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Hydration patterns and intermolecular interactions in A-DNA crystal structures. Implications for DNA recognition. J.Mol.Biol., 248, 1995
1AKZ	HUMAN URACIL-DNA GLYCOSYLASE 分子名称: URACIL-DNA GLYCOSYLASE 著者 Tainer, J.A, Mol, C.D. 登録日 1997-05-27 公開日 1997-08-20 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.57 Å) 主引用文献 Base excision repair initiation revealed by crystal structures and binding kinetics of human uracil-DNA glycosylase with DNA. Embo J., 17, 1998
2BPC	CRYSTAL STRUCTURE OF RAT DNA POLYMERASE BETA: EVIDENCE FOR A COMMON POLYMERASE MECHANISM 分子名称: DNA POLYMERASE BETA, MANGANESE (II) ION 著者 Sawaya, M.R, Pelletier, H, Kumar, A, Wilson, S.H, Kraut, J. 登録日 1994-07-08 公開日 1994-08-31 最終更新日 2024-02-14 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Crystal structure of rat DNA polymerase beta: evidence for a common polymerase mechanism. Science, 264, 1994
2LD5	Solution NMR-derived complex structure of Hoxa13 DNA binding domain bound to DNA 分子名称: DNA (5'-D(*CP*AP*AP*AP*TP*AP*AP*AP*AP*TP*C)-3'), DNA (5'-D(P*GP*AP*TP*TP*TP*TP*AP*TP*TP*TP*G)-3'), Homeobox protein Hox-A13 著者 Zhang, Y. 登録日 2011-05-14 公開日 2011-08-10 最終更新日 2024-05-01 実験手法 SOLUTION NMR 主引用文献 Structural basis for sequence specific DNA binding and protein dimerization of HOXA13. Plos One, 6, 2011
6IOD	The structure of UdgX in complex with single-stranded DNA 分子名称: DNA, IRON/SULFUR CLUSTER, Phage SPO1 DNA polymerase-related protein 著者 Xie, W, Tu, J. 登録日 2018-10-29 公開日 2019-07-31 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.66 Å) 主引用文献 Suicide inactivation of the uracil DNA glycosylase UdgX by covalent complex formation. Nat.Chem.Biol., 15, 2019
1A35	HUMAN TOPOISOMERASE I/DNA COMPLEX 分子名称: DNA (5'-D(*AP*AP*AP*AP*AP*GP*AP*CP*TP*TP*AP*GP*AP*AP*AP*AP*AP*(BRU)P*(BRU)P*TP*TP*T)-3'), DNA (5'-D(*AP*AP*AP*AP*AP*TP*+UP*+UP*+UP*+UP*CP*+UP*AP*AP*GP*TP*CP*TP*TP*TP*+ UP*T)-3'), PROTEIN (DNA TOPOISOMERASE I) 著者 Redinbo, M.R, Stewart, L, Kuhn, P, Champoux, J.J, Hol, W.G. 登録日 1998-01-29 公開日 1998-08-28 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.5 Å) 主引用文献 Crystal structures of human topoisomerase I in covalent and noncovalent complexes with DNA. Science, 279, 1998
7YHO	CryoEM structure of Arabidopsis ROS1 in complex with TG mismatch dsDNA at 3.3 Angstroms resolution 分子名称: DNA (40-MER), IRON/SULFUR CLUSTER, Sex-determining region Y protein,DNA glycosylase/AP lyase ROS1 著者 Du, X, Du, J. 登録日 2022-07-14 公開日 2022-11-30 最終更新日 2024-07-03 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Molecular basis of the plant ROS1-mediated active DNA demethylation. Nat.Plants, 9, 2023
6KBX	Crystal structure of yedK in complex with ssDNA containing abasic site 分子名称: DNA 5'-D (*CP*GP*GP*TP* (PED)P*GP*AP*TP*TP*C)-3', SOS response-associated protein 著者 Wang, N, Bao, H, Huang, H. 登録日 2019-06-26 公開日 2019-07-10 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.221 Å) 主引用文献 Molecular basis of abasic site sensing in single-stranded DNA by the SRAP domain of E. coli yedK. Nucleic Acids Res., 47, 2019
6K3K	Solution structure of APOBEC3G-CD2 with ssDNA, Product B 分子名称: DNA dC->dU-editing enzyme APOBEC-3G, DNA/RNA (5'-D(*AP*TP*TP*CP*UP*(ICY)P*AP*AP*TP*T)-3'), ZINC ION 著者 Cao, C, Yan, X, Lan, W, Wang, C. 登録日 2019-05-19 公開日 2019-06-12 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural Investigations on the Interactions between Cytidine Deaminase Human APOBEC3G and DNA. Chem Asian J, 14, 2019
6K3J	Solution structure of APOBEC3G-CD2 with ssDNA, Product A 分子名称: DNA (5'-D(*AP*TP*TP*CP*UP*(IUR)P*AP*AP*TP*T)-3'), DNA dC->dU-editing enzyme APOBEC-3G, ZINC ION 著者 Cao, C, Yan, X, Lan, W, Wang, C. 登録日 2019-05-19 公開日 2019-06-12 最終更新日 2024-05-15 実験手法 SOLUTION NMR 主引用文献 Structural Investigations on the Interactions between Cytidine Deaminase Human APOBEC3G and DNA. Chem Asian J, 14, 2019
3MQY	SgrAI with cleaved DNA and Magnesium bound 分子名称: DNA (5'-D(*GP*AP*GP*TP*CP*CP*A)-3'), DNA (5'-D(P*CP*CP*GP*GP*TP*GP*GP*AP*CP*TP*C)-3'), MAGNESIUM ION, ... 著者 Dunten, P.W, Horton, N.C, Little, E.J. 登録日 2010-04-28 公開日 2010-11-24 最終更新日 2023-09-06 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 New clues in the allosteric activation of DNA cleavage by SgrAI: structures of SgrAI bound to cleaved primary-site DNA and uncleaved secondary-site DNA. Acta Crystallogr.,Sect.D, 67, 2011
6ERG	Complex of XLF and heterodimer Ku bound to DNA 分子名称: DNA (21-MER), DNA (34-MER), Non-homologous end-joining factor 1, ... 著者 Nemoz, C, Legrand, P, Ropars, V, Charbonnier, J.B. 登録日 2017-10-18 公開日 2018-10-17 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.9 Å) 主引用文献 XLF and APLF bind Ku80 at two remote sites to ensure DNA repair by non-homologous end joining. Nat. Struct. Mol. Biol., 25, 2018
1BDX	E. COLI DNA HELICASE RUVA WITH BOUND DNA HOLLIDAY JUNCTION, ALPHA CARBONS AND PHOSPHATE ATOMS ONLY 分子名称: DNA (5'-D(P*GP*CP*AP*TP*GP*CP*AP*TP*AP*TP*GP*CP*AP*TP*GP*C)-3'), HOLLIDAY JUNCTION DNA HELICASE RUVA 著者 Hargreaves, D, Rice, D.W, Sedelnikova, S.E, Artymiuk, P.J, Lloyd, R.G, Rafferty, J.B. 登録日 1998-05-11 公開日 1999-11-24 最終更新日 2023-08-09 実験手法 X-RAY DIFFRACTION (6 Å) 主引用文献 Crystal structure of E.coli RuvA with bound DNA Holliday junction at 6 A resolution. Nat.Struct.Biol., 5, 1998
6FB9	Crystal Structure of the I-CreI Homing Endonuclease D75N variant in complex with an altered version of its target DNA at 5NNN region in the presence of Manganese 分子名称: DNA (5'-D(*TP*CP*AP*AP*AP*AP*CP*GP*TP*CP*GP*TP*AP*C)-3'), DNA (5'-D(*TP*CP*AP*AP*AP*AP*CP*TP*GP*CP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*AP*CP*GP*TP*TP*TP*TP*GP*A)-3'), ... 著者 Molina, R, Prieto, J. 登録日 2017-12-18 公開日 2018-07-18 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.95 Å) 主引用文献 Understanding the indirect DNA read-out specificity of I-CreI Meganuclease. Sci Rep, 8, 2018
6F5B	Structure of ARTD2/PARP2 WGR domain bound to double stranded DNA with 5'phosphate 分子名称: DNA (5'-D(P*GP*CP*CP*TP*AP*TP*AP*GP*GP*C)-3'), Poly [ADP-ribose] polymerase 2 著者 Obaji, E, Haikarainen, T, Lehtio, L. 登録日 2017-12-01 公開日 2018-10-10 最終更新日 2024-05-01 実験手法 X-RAY DIFFRACTION (2.8 Å) 主引用文献 Structural basis for DNA break recognition by ARTD2/PARP2. Nucleic Acids Res., 46, 2018
6F5F	Structure of ARTD2/PARP2 WGR domain bound to double strand DNA with 5 nucleotide overhang and 5'phosphate 分子名称: DNA (5'-D(P*CP*GP*GP*TP*CP*GP*CP*CP*TP*AP*TP*AP*GP*GP*C)-3'), Poly [ADP-ribose] polymerase 2 著者 Obaji, E, Haikarainen, T, Lehtio, L. 登録日 2017-12-01 公開日 2018-10-10 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.98 Å) 主引用文献 Structural basis for DNA break recognition by ARTD2/PARP2. Nucleic Acids Res., 46, 2018

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