Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6YX3
DownloadVisualize
BU of 6yx3 by Molmil
Crystal structure of SAICAR Synthetase (PurC) from Mycobacterium abscessus in complex with ATP
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Phosphoribosylaminoimidazole-succinocarboxamide synthase, ...
著者Thomas, S.E, Charoensutthivarakul, S, Coyne, A.G, Abell, C, Blundell, T.L.
登録日2020-04-30
公開日2021-05-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.22 Å)
主引用文献Development of Inhibitors of SAICAR Synthetase (PurC) from Mycobacterium abscessus Using a Fragment-Based Approach.
Acs Infect Dis., 8, 2022
8BRO
DownloadVisualize
BU of 8bro by Molmil
Structure of the N-terminal domain of BC2L-C lectin (1-131) in complex with a synthetic beta-fucosylamide
分子名称: 5-[3-(aminomethyl)phenyl]-~{N}-[(2~{S},3~{S},4~{R},5~{S},6~{S})-6-methyl-3,4,5-tris(oxidanyl)oxan-2-yl]furan-2-carboxamide, Lectin
著者Varrot, A, Lunstrom, J.
登録日2022-11-23
公開日2023-02-08
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (1.55 Å)
主引用文献Identification of New L-Fucosyl and L-Galactosyl Amides as Glycomimetic Ligands of TNF Lectin Domain of BC2L-C from Burkholderia cenocepacia.
Molecules, 28, 2023
6GT8
DownloadVisualize
BU of 6gt8 by Molmil
Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y132V,T157C variant
分子名称: 2-dehydro-3-deoxy-phosphogluconate/2-dehydro-3-deoxy-6-phosphogalactonate aldolase, 3-DEOXY-D-ARABINO-HEXONIC ACID
著者Crennell, S.J, Danson, M.J, Royer, S.
登録日2018-06-15
公開日2019-06-26
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (3.15 Å)
主引用文献Sulfolobus solfataricus 2-keto-3-deoxygluconate aldolase Y132V,T157C variant
To Be Published
6JWN
DownloadVisualize
BU of 6jwn by Molmil
Crystal structure of the SPRY domain of SPSB2 in complex with cR9, a cyclic peptide inhibitor of SPSB-iNOS interaction
分子名称: Nitric oxide synthase, inducible, SPRY domain-containing SOCS box protein 2
著者Li, K, Kuang, Z.
登録日2019-04-21
公開日2020-04-22
最終更新日2024-03-27
実験手法X-RAY DIFFRACTION (1.61 Å)
主引用文献Crystal structure of SPSB2 in complex with cR9, a cyclic peptide inhibitor of SPSB-iNOS interaction
To Be Published
6C16
DownloadVisualize
BU of 6c16 by Molmil
Ubiquitin variant (UbV.Fbl10.1) bound to a human Skp1-Fbl11 fragment complex.
分子名称: Lysine-specific demethylase 2A, Polyubiquitin-B, S-phase kinase-associated protein 1
著者Manczyk, N, Sicheri, F.
登録日2018-01-04
公開日2018-07-18
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (3.27 Å)
主引用文献A Structure-Based Strategy for Engineering Selective Ubiquitin Variant Inhibitors of Skp1-Cul1-F-Box Ubiquitin Ligases.
Structure, 26, 2018
6KGT
DownloadVisualize
BU of 6kgt by Molmil
Crystal structure of Penicillin binding protein 3 (PBP3) from Mycobacterium tuerculosis, complexed with faropenem
分子名称: (2R)-2-[(1S,2R)-1-carboxy-2-hydroxypropyl]-5-[(2R)-oxolan-2-yl]-2,3-dihydro-1,3-thiazole-4-carboxylic acid, COBALT (II) ION, Penicillin-binding protein PbpB
著者Lu, Z.K, Zhang, A.L, Liu, X, Guddat, L, Yang, H.T, Rao, Z.H.
登録日2019-07-12
公開日2020-03-11
実験手法X-RAY DIFFRACTION (2.308 Å)
主引用文献Structures ofMycobacterium tuberculosisPenicillin-Binding Protein 3 in Complex with Fivebeta-Lactam Antibiotics Reveal Mechanism of Inactivation.
Mol.Pharmacol., 97, 2020
7LFV
DownloadVisualize
BU of 7lfv by Molmil
Crystal structure of the SARS CoV-1 Papain-like protease in complex with peptide inhibitor VIR251
分子名称: 1,2-ETHANEDIOL, AMMONIUM ION, CHLORIDE ION, ...
著者Olsen, S.K, Lv, Z.
登録日2021-01-18
公開日2021-11-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.23 Å)
主引用文献A molecular sensor determines the ubiquitin substrate specificity of SARS-CoV-2 papain-like protease.
Cell Rep, 36, 2021
6YVJ
DownloadVisualize
BU of 6yvj by Molmil
EED in complex with a triazolopyrimidine
分子名称: GLYCEROL, N-(2,3-dihydro-1-benzofuran-4-ylmethyl)-8-(4-methylsulfonylphenyl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-amine, N-[(5-fluoranyl-2,3-dihydro-1-benzofuran-4-yl)methyl]-8-(2-methylpyridin-3-yl)-[1,2,4]triazolo[4,3-c]pyrimidin-5-amine, ...
著者Read, J.A.
登録日2020-04-28
公開日2021-05-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.84 Å)
主引用文献Free energy perturbation in the design of EED ligands as inhibitors of polycomb repressive complex 2 (PRC2) methyltransferase.
Bioorg.Med.Chem.Lett., 39, 2021
6C1B
DownloadVisualize
BU of 6c1b by Molmil
FGFR1 kinase complex with inhibitor SN37118
分子名称: 3-(2,6-dichloro-3,5-dimethoxyphenyl)-1-{(3S)-1-[(2E)-4-(dimethylamino)but-2-enoyl]pyrrolidin-3-yl}-7-(phenylamino)-3,4-dihydropyrimido[4,5-d]pyrimidin-2(1H)-one, Fibroblast growth factor receptor 1
著者Yosaatmadja, Y, Smaill, J.B, Squire, C.J.
登録日2018-01-04
公開日2019-01-16
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Understanding the structural requirements for covalent inhibition of FGFR1-3
To Be Published
6GJ2
DownloadVisualize
BU of 6gj2 by Molmil
PURPLE ACID PHYTASE FROM WHEAT ISOFORM B2 - COMPLEX WITH INOSITOL HEXASULPHATE
分子名称: 1,2-ETHANEDIOL, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Faba-Rodriguez, R, Brearley, C.A, Hemmings, A.M.
登録日2018-05-15
公開日2019-11-27
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.68 Å)
主引用文献Structure of a cereal purple acid phytase provides new insights to phytate degradation in plants.
Plant Commun., 3, 2022
6QN4
DownloadVisualize
BU of 6qn4 by Molmil
Death-associated Protein Kinase 1 (DAPK1) catalytic and auto-regulatory domains with S289E and S308E mutations
分子名称: ACETATE ION, Death-associated protein kinase 1, GLYCEROL, ...
著者Huart, A.-S, Wilmanns, M.
登録日2019-02-08
公開日2019-08-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Molecular mechanisms behind DAPK regulation: how phosphorylation switches work
To Be Published
8T1A
DownloadVisualize
BU of 8t1a by Molmil
Crystal Structure of S-adenosylmethionine-dependent methyltransferase UmaA from Mycobacterium tuberculosis (P32 Twin)
分子名称: GLYCEROL, NITRATE ION, S-adenosylmethionine-dependent methyltransferase UmaA
著者Seattle Structural Genomics Center for Infectious Disease, Seattle Structural Genomics Center for Infectious Disease (SSGCID)
登録日2023-06-02
公開日2023-06-14
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献Crystal Structure of S-adenosylmethionine-dependent methyltransferase UmaA from Mycobacterium tuberculosis (P32 Twin)
To be published
6GTL
DownloadVisualize
BU of 6gtl by Molmil
Achromobacter cycloclastes copper nitrite reductase at pH 6.0
分子名称: COPPER (II) ION, Copper-containing nitrite reductase, MALONATE ION, ...
著者Halsted, T.P, Eady, R.R, Antonyuk, S.V, Hasnain, S.S.
登録日2018-06-18
公開日2019-07-03
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Catalytically important damage-free structures of a copper nitrite reductase obtained by femtosecond X-ray laser and room-temperature neutron crystallography.
Iucrj, 6, 2019
6BP0
DownloadVisualize
BU of 6bp0 by Molmil
Crystal Structure of the Human vaccinia-related kinase 1 bound to (R)-2-phenylaminopteridinone inhibitor
分子名称: (7R)-2-[(3,5-difluoro-4-hydroxyphenyl)amino]-5,7,8-trimethyl-7,8-dihydropteridin-6(5H)-one, 1,2-ETHANEDIOL, CHLORIDE ION, ...
著者Counago, R.M, dos Reis, C.V, de Souza, G.P, Azevedo, A, Guimaraes, C, Mascarello, A, Gama, F, Ferreira, M, Massirer, K.B, Arruda, P, Edwards, A.M, Elkins, J, Structural Genomics Consortium (SGC)
登録日2017-11-21
公開日2017-12-06
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Crystal Structure of the Human vaccinia-related kinase 1 bound to (R)-2-phenylaminopteridinone inhibitor
To Be Published
7LFU
DownloadVisualize
BU of 7lfu by Molmil
Crystal structure of the SARS CoV-1 Papain-like protease in complex with peptide inhibitor VIR250
分子名称: Papain-like protease peptide inhibitor VIR250, papain-like protease
著者Olsen, S.K, Lv, Z.
登録日2021-01-18
公開日2021-11-10
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (2.29 Å)
主引用文献A molecular sensor determines the ubiquitin substrate specificity of SARS-CoV-2 papain-like protease.
Cell Rep, 36, 2021
5VM4
DownloadVisualize
BU of 5vm4 by Molmil
The apo form of the triclocarban-binding single domain camelid nanobody VHH T10
分子名称: ACETATE ION, FORMIC ACID, Single domain camelid nanobody VHH T10
著者Tabares-da Rosa, S, Gonzalez-Sapienza, G, Wilson, D.K.
登録日2017-04-26
公開日2018-05-02
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (1.9 Å)
主引用文献Structure and specificity of several triclocarban-binding single domain camelid antibody fragments.
J. Mol. Recognit., 32, 2019
6QUK
DownloadVisualize
BU of 6quk by Molmil
Protein crystallization by ionic liquid hydrogel support: glucose isomerase grown by using ionic liquid hydrogel
分子名称: GLYCEROL, MANGANESE (II) ION, SULFATE ION, ...
著者Belviso, B.D, Caliandro, R, Caliandro, R.
登録日2019-02-27
公開日2019-03-13
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.58 Å)
主引用文献Protein Crystallization in Ionic-Liquid Hydrogel Composite Membranes
Crystals, 9, 2019
6GJJ
DownloadVisualize
BU of 6gjj by Molmil
Cyclophilin A complexed with tri-vector ligand 2.
分子名称: Peptidyl-prolyl cis-trans isomerase A, ethyl 2-[[(4-aminophenyl)methyl-propyl-carbamoyl]amino]ethanoate
著者Georgiou, C, De Simone, A, Walkinshaw, M.D, Michel, J.
登録日2018-05-16
公開日2018-11-07
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.38 Å)
主引用文献A computationally designed binding mode flip leads to a novel class of potent tri-vector cyclophilin inhibitors.
Chem Sci, 10, 2019
7RKS
DownloadVisualize
BU of 7rks by Molmil
Structure of the SARS-CoV receptor binding domain in complex with the human neutralizing antibody Fab fragment, C118
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose, C118 Antibody Fab Heavy Chain, ...
著者Jette, C.A, Bjorkman, P.J, Barnes, C.O.
登録日2021-07-22
公開日2021-09-22
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Broad cross-reactivity across sarbecoviruses exhibited by a subset of COVID-19 donor-derived neutralizing antibodies.
Cell Rep, 36, 2021
6C1U
DownloadVisualize
BU of 6c1u by Molmil
MBD2 in complex with a deoxy-oligonucleotide
分子名称: 12-mer DNA, Methyl-CpG-binding domain protein 2, UNKNOWN ATOM OR ION
著者Lei, M, Tempel, W, Arrowsmith, C.H, Bountra, C, Edwards, A.M, Min, J, Structural Genomics Consortium (SGC)
登録日2018-01-05
公開日2018-02-14
最終更新日2024-04-03
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Structural basis for the ability of MBD domains to bind methyl-CG and TG sites in DNA.
J. Biol. Chem., 293, 2018
7LTN
DownloadVisualize
BU of 7ltn by Molmil
Crystal structure of Mpro in complex with inhibitor CDD-1713
分子名称: 2-[4-(1~{H}-indazol-4-yl)-2-methanoyl-6-methoxy-phenoxy]-~{N},~{N}-dimethyl-ethanamide, 3C-like proteinase
著者Lu, S, Palzkill, T, Matzuk, M, Young, D, Melek, N, Chamakuri, S.
登録日2021-02-19
公開日2021-11-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (1.79 Å)
主引用文献DNA-encoded chemistry technology yields expedient access to SARS-CoV-2 M pro inhibitors.
Proc.Natl.Acad.Sci.USA, 118, 2021
7RMQ
DownloadVisualize
BU of 7rmq by Molmil
Crystal structure of cycloviolacin O2
分子名称: Cycloviolacin O2, D-[I11L]cycloviolacin O2, FORMIC ACID
著者Huang, Y.H, Du, Q.
登録日2021-07-28
公開日2021-09-22
最終更新日2023-11-15
実験手法X-RAY DIFFRACTION (1.17 Å)
主引用文献Enabling Efficient Folding and High-Resolution Crystallographic Analysis of Bracelet Cyclotides.
Molecules, 26, 2021
6YY9
DownloadVisualize
BU of 6yy9 by Molmil
Crystal structure of SAICAR Synthetase (PurC) from Mycobacterium abscessus in complex with inhibitor
分子名称: 1,2-ETHANEDIOL, 4-azanyl-6-[1-(pyridin-3-ylmethyl)pyrazol-4-yl]pyrimidine-5-carbonitrile, Phosphoribosylaminoimidazole-succinocarboxamide synthase, ...
著者Thomas, S.E, Charoensutthivarakul, S, Coyne, A.G, Abell, C, Blundell, T.L.
登録日2020-05-04
公開日2021-05-12
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.413 Å)
主引用文献Development of Inhibitors of SAICAR Synthetase (PurC) from Mycobacterium abscessus Using a Fragment-Based Approach.
Acs Infect Dis., 8, 2022
6QUW
DownloadVisualize
BU of 6quw by Molmil
Crystal Structure of KRAS-G12D in Complex with Natural Product-Like Compound 9b
分子名称: (3~{a}~{R},8~{b}~{S})-2,2,3~{a},8~{b}-tetramethyl-3,4-dihydro-1~{H}-pyrrolo[2,3-b]indole, GTPase KRas, MAGNESIUM ION, ...
著者Fischer, G, Kessler, D, Muellauer, B, Wolkerstorfer, B.
登録日2019-02-28
公開日2019-07-31
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (1.242 Å)
主引用文献KRAS Binders Hidden in Nature.
Chemistry, 25, 2019
6QNX
DownloadVisualize
BU of 6qnx by Molmil
Structure of the SA2/SCC1/CTCF complex
分子名称: Cohesin subunit SA-2, Double-strand-break repair protein rad21 homolog, Transcriptional repressor CTCF
著者Li, Y, Muir, K.W, Panne, D.
登録日2019-02-12
公開日2020-01-22
最終更新日2024-05-15
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献The structural basis for cohesin-CTCF-anchored loops.
Nature, 578, 2020

224201

件を2024-08-28に公開中

PDB statisticsPDBj update infoContact PDBjnumon