PDB: 60814 件ウェブページステータス検索Chemie searchBIRD

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5CKD	E. coli MazF E24A form III 分子名称: Endoribonuclease MazF, SODIUM ION 著者 Zorzini, V, Loris, R. 登録日 2015-07-15 公開日 2016-04-06 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.698 Å) 主引用文献 Substrate Recognition and Activity Regulation of the Escherichia coli mRNA Endonuclease MazF. J.Biol.Chem., 291, 2016
6VAE	Mono-ubiquitinated Fanconi Anemia ID complex bound to ICL DNA 分子名称: DNA (29-MER), Fanconi anemia group D2 protein, Fanconi anemia, ... 著者 Pavletich, N.P. 登録日 2019-12-17 公開日 2020-03-18 最終更新日 2024-11-20 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 DNA clamp function of the monoubiquitinated Fanconi anaemia ID complex. Nature, 580, 2020
9N6B	Structure of the retron IA complex with HNH nuclease in the "up" orientation 分子名称: AAA family ATPase, ADENOSINE-5'-TRIPHOSPHATE, RNA-directed DNA polymerase, ... 著者 Burman, N, Thomas-George, J, Wilkinson, R, Wiedenheft, B. 登録日 2025-02-05 公開日 2025-04-23 実験手法 ELECTRON MICROSCOPY (3.09 Å) 主引用文献 Structural basis of antiphage defense by an ATPase-associated reverse transcriptase. Biorxiv, 2025
9G7G	Structure of the clippase PaJOS from Pigmentiphaga aceris 分子名称: PaJOS, Polyubiquitin-B, prop-2-en-1-amine 著者 Baumann, U, Uthoff, M, Hermanns, T, Hofmann, K. 登録日 2024-07-21 公開日 2025-04-23 実験手法 X-RAY DIFFRACTION (1.89 Å) 主引用文献 A family of bacterial Josephin-like deubiquitinases with an irreversible cleavage mode. Mol.Cell, 85, 2025
5CO7	E. coli MazF form III 分子名称: Endoribonuclease MazF 著者 Zorzini, V, Loris, R. 登録日 2015-07-19 公開日 2016-04-06 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (3.489 Å) 主引用文献 Substrate Recognition and Activity Regulation of the Escherichia coli mRNA Endonuclease MazF. J.Biol.Chem., 291, 2016
7XZO	Formate-tetrahydrofolate ligase in complex with ATP 分子名称: (R,R)-2,3-BUTANEDIOL, ADENOSINE-5'-TRIPHOSPHATE, Formate--tetrahydrofolate ligase, ... 著者 Fang, C.L, Zhang, Y. 登録日 2022-06-03 公開日 2023-06-07 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.31 Å) 主引用文献 Identification of FtfL as a novel target of berberine in intestinal bacteria. Bmc Biol., 21, 2023
7XZN	Formate-tetrahydrofolate ligase from Peptostreptococcus anaerobius 分子名称: 1,2-ETHANEDIOL, Formate--tetrahydrofolate ligase, TRIS(HYDROXYETHYL)AMINOMETHANE 著者 Fang, C.L, Zhang, Y. 登録日 2022-06-03 公開日 2023-06-07 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.04 Å) 主引用文献 Identification of FtfL as a novel target of berberine in intestinal bacteria. Bmc Biol., 21, 2023
7XZP	Formate-tetrahydrofolate ligase in complex with berberine 分子名称: BERBERINE, Formate--tetrahydrofolate ligase, PROLINE, ... 著者 Fang, C.L, Zhang, Y. 登録日 2022-06-03 公開日 2023-06-07 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 Identification of FtfL as a novel target of berberine in intestinal bacteria. Bmc Biol., 21, 2023
1RG8	Human Acidic Fibroblast Growth Factor (haFGF-1) at 1.10 angstrom resolution (140 amino acid form) 分子名称: FORMIC ACID, Heparin-binding growth factor 1 著者 Bernett, M.J, Somasundaram, T, Blaber, M. 登録日 2003-11-11 公開日 2004-10-05 最終更新日 2023-08-23 実験手法 X-RAY DIFFRACTION (1.1 Å) 主引用文献 An atomic resolution structure for human fibroblast growth factor 1. Proteins, 57, 2004
6PBA	Structure of ClpC1-NTD 分子名称: ATP-dependent Clp protease ATP-binding subunit ClpC1 著者 Abad-Zapatero, C, Wolf, N.M. 登録日 2019-06-13 公開日 2020-05-13 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.77 Å) 主引用文献 Structure of the N-terminal domain of ClpC1 in complex with the antituberculosis natural product ecumicin reveals unique binding interactions. Acta Crystallogr D Struct Biol, 76, 2020
6PBQ	Structure of ClpC1-NTD 分子名称: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, ATP-dependent Clp protease ATP-binding subunit ClpC1, PHOSPHATE ION 著者 Abad-Zapatero, C, Wolf, N.M. 登録日 2019-06-14 公開日 2020-05-13 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 Structure of the N-terminal domain of ClpC1 in complex with the antituberculosis natural product ecumicin reveals unique binding interactions. Acta Crystallogr D Struct Biol, 76, 2020
4ZOJ	Methylsulfanyl-containing inhibitor bound in the active site of Mycobacterium tuberculosis anthranilate phosphoribosyltransferase (AnPRT; trpD) 分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, 4-methyl-2-{[2-methyl-6-(methylsulfanyl)phenyl]amino}benzoic acid, Anthranilate phosphoribosyltransferase, ... 著者 Evans, G.L, Baker, E.N, Lott, J.S, TB Structural Genomics Consortium (TBSGC) 登録日 2015-05-06 公開日 2016-05-11 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.96 Å) 主引用文献 Inhibitor bound in the active site of Mycobacterium tuberculosis anthranilate phosphoribosyltransferase (AnPRT; trpD). To be Published
6OZW	Crystal structure of the 65-kilodalton amino-terminal fragment of DNA topoisomerase I from Streptococcus mutans 分子名称: DNA topoisomerase 1, FORMIC ACID, MAGNESIUM ION 著者 Jones, J.A, Hevener, K.E. 登録日 2019-05-16 公開日 2019-06-26 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.063 Å) 主引用文献 Crystal structure of the 65-kilodalton amino-terminal fragment of DNA topoisomerase I from the gram-positive model organism Streptococcus mutans. Biochem.Biophys.Res.Commun., 516, 2019
9N6C	Structure of the Retron IA Complex without the HNH Nuclease 分子名称: AAA family ATPase, ADENOSINE-5'-TRIPHOSPHATE, RNA-directed DNA polymerase, ... 著者 Burman, N, Thomas-George, J, Wilkinson, R, Wiedenheft, B. 登録日 2025-02-05 公開日 2025-04-23 実験手法 ELECTRON MICROSCOPY (2.99 Å) 主引用文献 Structural basis of antiphage defense by an ATPase-associated reverse transcriptase. Biorxiv, 2025
9N69	Structure of the retron IA complex with HNH nuclease in the "down" orientation 分子名称: AAA family ATPase, ADENOSINE-5'-TRIPHOSPHATE, RNA-directed DNA polymerase, ... 著者 Burman, N, Thomas-George, J, Wilkinson, R, Wiedenheft, B. 登録日 2025-02-05 公開日 2025-04-23 実験手法 ELECTRON MICROSCOPY (3.13 Å) 主引用文献 Structural basis of antiphage defense by an ATPase-associated reverse transcriptase. Biorxiv, 2025
5CFV	Fusion of Maltose-binding Protein and PilA from Acinetobacter nosocomialis M2 分子名称: (4S)-2-METHYL-2,4-PENTANEDIOL, GLYCEROL, MAGNESIUM ION, ... 著者 Piepenbrink, K.H, Sundberg, E.J. 登録日 2015-07-08 公開日 2016-07-13 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural Diversity in the Type IV Pili of Multidrug-resistant Acinetobacter. J.Biol.Chem., 291, 2016
4ZOF	Lobenzarit-like inhibitor bound in the active site of Mycobacterium tuberculosis anthranilate phosphoribosyltransferase (AnPRT; trpD) 分子名称: 1-O-pyrophosphono-5-O-phosphono-alpha-D-ribofuranose, 2-[(2-carboxy-5-nitrophenyl)amino]-3-methylbenzoic acid, Anthranilate phosphoribosyltransferase, ... 著者 Evans, G.L, Baker, E.N, Lott, J.S, TB Structural Genomics Consortium (TBSGC) 登録日 2015-05-06 公開日 2016-05-11 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Inhibitor bound in the active site of Mycobacterium tuberculosis anthranilate phosphoribosyltransferase (AnPRT; trpD). To be Published
5CK9	E. coli MazF form I 分子名称: Endoribonuclease MazF, PENTAETHYLENE GLYCOL 著者 Zorzini, V, Loris, R. 登録日 2015-07-15 公開日 2016-04-06 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.898 Å) 主引用文献 Substrate Recognition and Activity Regulation of the Escherichia coli mRNA Endonuclease MazF. J.Biol.Chem., 291, 2016
9F5T	Ubiquitin C-terminal clippase BpJOS 分子名称: BpJOS, Ubiquitin 著者 Uthoff, M, Hermanns, T, Birkmann, S, Hofmann, K, Baumann, U. 登録日 2024-04-30 公開日 2025-04-23 実験手法 X-RAY DIFFRACTION (2.56 Å) 主引用文献 A family of bacterial Josephin-like deubiquitinases with an irreversible cleavage mode. Mol.Cell, 85, 2025
5CKH	E. coli MazF E24A form IIb 分子名称: Endoribonuclease MazF 著者 Zorzini, V, Loris, R. 登録日 2015-07-15 公開日 2016-04-06 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.449 Å) 主引用文献 Substrate Recognition and Activity Regulation of the Escherichia coli mRNA Endonuclease MazF. J.Biol.Chem., 291, 2016
9FPA	DUBS Parachlamydia sp. PcJOS orthorhombic crystal form 分子名称: CITRIC ACID, Peptidase C39-like domain-containing protein, Ubiquitin 著者 Baumann, U, Hermanns, T, Uthoff, M. 登録日 2024-06-13 公開日 2025-04-23 実験手法 X-RAY DIFFRACTION (2.18 Å) 主引用文献 A family of bacterial Josephin-like deubiquitinases with an irreversible cleavage mode. Mol.Cell, 85, 2025
8DX0	VanSC CA domain 分子名称: Histidine kinase, MAGNESIUM ION 著者 Loll, P.J. 登録日 2022-08-02 公開日 2023-03-22 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (1.45 Å) 主引用文献 Structure of VanS from vancomycin-resistant enterococci: A sensor kinase with weak ATP binding. J.Biol.Chem., 299, 2023
5CQX	E. coli MazF mutant E24A in complex with MazE residues 68-82 form I 分子名称: Antitoxin MazE, Endoribonuclease MazF 著者 Zorzini, V, Loris, R. 登録日 2015-07-22 公開日 2016-04-06 最終更新日 2024-10-23 実験手法 X-RAY DIFFRACTION (1.63 Å) 主引用文献 Substrate Recognition and Activity Regulation of the Escherichia coli mRNA Endonuclease MazF. J.Biol.Chem., 291, 2016
6SUB	Human PTPRU D1 domain, reduced form 分子名称: CHLORIDE ION, Receptor-type tyrosine-protein phosphatase U 著者 Hay, I.M, Fearnley, G.W, Sharpe, H.J, Deane, J.E. 登録日 2019-09-13 公開日 2020-07-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (1.72 Å) 主引用文献 The receptor PTPRU is a redox sensitive pseudophosphatase. Nat Commun, 11, 2020
5UU5	Bacteriophage P22 mature virion capsid protein 分子名称: Major capsid protein 著者 Hryc, C.F, Chen, D.-H, Afonine, P.V, Jakana, J, Wang, Z, Haase-Pettingell, C, Jiang, W, Adams, P.D, King, J.A, Schmid, M.F, Chiu, W. 登録日 2017-02-16 公開日 2017-03-15 最終更新日 2024-03-13 実験手法 ELECTRON MICROSCOPY (3.3 Å) 主引用文献 Accurate model annotation of a near-atomic resolution cryo-EM map. Proc. Natl. Acad. Sci. U.S.A., 114, 2017

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