Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

8QPY
DownloadVisualize
BU of 8qpy by Molmil
Solution NMR structure of the peptidyl carrier domain TomAPCP from the Tomaymycin non-ribosomal peptide synthetase
分子名称: Carrier protein TomAPCP
著者Karanth, M.N, Kirkpatrick, J.P, Carlomagno, T.
登録日2023-10-03
公開日2024-06-26
最終更新日2024-07-03
実験手法SOLUTION NMR
主引用文献The specificity of intermodular recognition in a prototypical nonribosomal peptide synthetase depends on an adaptor domain.
Sci Adv, 10, 2024
8QQE
DownloadVisualize
BU of 8qqe by Molmil
Crystal structure of the complex between DMC1 and the PhePP domain of BRCA2
分子名称: Breast cancer type 2 susceptibility protein, CHLORIDE ION, MAGNESIUM ION, ...
著者Miron, S, Legrand, P, Zinn-Justin, S.
登録日2023-10-04
公開日2024-06-19
最終更新日2024-07-17
実験手法X-RAY DIFFRACTION (3.461 Å)
主引用文献DMC1 and RAD51 bind FxxA and FxPP motifs of BRCA2 via two separate interfaces.
Nucleic Acids Res., 52, 2024
8QRN
DownloadVisualize
BU of 8qrn by Molmil
mt-SSU in GTPBP8 knock-out cells, state 4
分子名称: 12S mitochondrial rRNA, 28S ribosomal protein S10, mitochondrial, ...
著者Valentin Gese, G, Cipullo, M, Rorbach, J, Hallberg, B.M.
登録日2023-10-09
公開日2024-06-26
最終更新日2024-07-17
実験手法ELECTRON MICROSCOPY (2.98 Å)
主引用文献GTPBP8 plays a role in mitoribosome formation in human mitochondria.
Nat Commun, 15, 2024
8RLN
DownloadVisualize
BU of 8rln by Molmil
Crystal structure of human adenosine A2A receptor (construct A2A-PSB2-bRIL) complexed with the partial antagonist LUF5834 at the orthosteric pocket
分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, (2S)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, 2-azanyl-4-(4-hydroxyphenyl)-6-(1~{H}-imidazol-2-ylmethylsulfanyl)pyridine-3,5-dicarbonitrile, ...
著者Strater, N, Claff, T, Weisse, R.H, Muller, C.E.
登録日2024-01-03
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.43 Å)
主引用文献Structural Insights into Partial Activation of the Prototypic G Protein-Coupled Adenosine A 2A Receptor.
Acs Pharmacol Transl Sci, 7, 2024
8RPI
DownloadVisualize
BU of 8rpi by Molmil
JanthE from Janthinobacterium sp. HH01, lactyl-ThDP
分子名称: 3-[(4-AMINO-2-METHYLPYRIMIDIN-5-YL)METHYL]-2-(1-CARBOXY-1-HYDROXYETHYL)-5-(2-{[HYDROXY(PHOSPHONOOXY)PHOSPHORYL]OXY}ETHYL)-4-METHYL-1,3-THIAZOL-3-IUM, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, ...
著者Lanza, L, Leogrande, C, Rabe von Pappenheim, F, Tittmann, K, Mueller, M.
登録日2024-01-16
公開日2024-06-12
最終更新日2024-08-21
実験手法X-RAY DIFFRACTION (2.71 Å)
主引用文献Identification and Characterization of Thiamine Diphosphate-Dependent Lyases with an Unusual CDG Motif.
Angew.Chem.Int.Ed.Engl., 63, 2024
8RKT
DownloadVisualize
BU of 8rkt by Molmil
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K Cas12k domain local-refinement map
分子名称: MAGNESIUM ION, Non-target strand - LE, ShCas12k, ...
著者Tenjo-Castano, F, Mesa, P, Montoya, G.
登録日2023-12-30
公開日2024-06-19
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.35 Å)
主引用文献Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.
Mol.Cell, 84, 2024
8QZH
DownloadVisualize
BU of 8qzh by Molmil
Crystal structure of apo-PptT from Mycobacterium tuberculosis
分子名称: 4'-phosphopantetheinyl transferase PptT, ACETATE ION, MAGNESIUM ION
著者Gavalda, S, Carivenc, C, Mourey, L, Pedelacq, J.D.
登録日2023-10-27
公開日2024-06-19
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Catalytic Cycle of Type II 4'-Phosphopantetheinyl Transferases
Acs Catalysis, 14, 2024
8RPB
DownloadVisualize
BU of 8rpb by Molmil
Structure of S79 Fab in complex with IgV domain of human PD-L1
分子名称: CHLORIDE ION, GLYCEROL, Programmed cell death 1 ligand 1, ...
著者Svensson, A, Kelpsas, V, Laursen, M, Rose, N.
登録日2024-01-15
公開日2024-06-19
実験手法X-RAY DIFFRACTION (2.794 Å)
主引用文献Structural analysis of light chain-driven bispecific antibodies targeting CD47 and PD-L1.
Mabs, 16, 2024
8QUS
DownloadVisualize
BU of 8qus by Molmil
Crystal structure of the Plasmodium vivax Apical membrane antigen (AMA1) in complex with single domain i-body WD34
分子名称: Apical merozoite antigen 1, single domain i-body WD34
著者Maddumage, J.C, Kvansakul, M.
登録日2023-10-17
公開日2024-07-03
実験手法X-RAY DIFFRACTION (3 Å)
主引用文献A broadly cross-reactive i-body to AMA1 potently inhibits blood and liver stages of Plasmodium parasites
Res Sq, 2024
7ZKN
DownloadVisualize
BU of 7zkn by Molmil
X-ray structure of the complex between human alpha thrombin and a pseudo-cyclic thrombin binding aptamer (TBA-NNp/DDp) - Crystal form gamma
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[13-methyl-5,7,12,14-tetrakis(oxidanylidene)-6,13-diazatetracyclo[6.6.2.0^{4,16}.0^{11,15}]hexadeca-1(15),2,4(16),8,10-pentaen-6-yl]propyl 3-[5,7,12,14-tetrakis(oxidanylidene)-13-(3-oxidanylpropyl)-6,13-diazatetracyclo[6.6.2.0^{4,16}.0^{11,15}]hexadeca-1,3,8(16),9,11(15)-pentaen-6-yl]propyl hydrogen phosphate, 3-[5-[3-bis(oxidanyl)phosphanyloxypropoxy]naphthalen-1-yl]oxypropyl 3-(5-oxidanylnaphthalen-1-yl)oxypropyl hydrogen phosphate, ...
著者Troisi, R, Sica, F.
登録日2022-04-13
公開日2022-11-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (3.03 Å)
主引用文献A terminal functionalization strategy reveals unusual binding abilities of anti-thrombin anticoagulant aptamers.
Mol Ther Nucleic Acids, 30, 2022
8RKU
DownloadVisualize
BU of 8rku by Molmil
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K TnsC domain local-refinement map
分子名称: ADENOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, Non-target strand - LE, ...
著者Tenjo-Castano, F, Mesa, P, Montoya, G.
登録日2023-12-30
公開日2024-06-19
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (2.3 Å)
主引用文献Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.
Mol.Cell, 84, 2024
7ZKM
DownloadVisualize
BU of 7zkm by Molmil
X-ray structure of the complex between human alpha thrombin and a pseudo-cyclic thrombin binding aptamer (TBA-NNp/DDp) - Crystal form beta
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, 3-[13-methyl-5,7,12,14-tetrakis(oxidanylidene)-6,13-diazatetracyclo[6.6.2.0^{4,16}.0^{11,15}]hexadeca-1(15),2,4(16),8,10-pentaen-6-yl]propyl 3-[5,7,12,14-tetrakis(oxidanylidene)-13-(3-oxidanylpropyl)-6,13-diazatetracyclo[6.6.2.0^{4,16}.0^{11,15}]hexadeca-1,3,8(16),9,11(15)-pentaen-6-yl]propyl hydrogen phosphate, 3-[5-[3-bis(oxidanyl)phosphanyloxypropoxy]naphthalen-1-yl]oxypropyl 3-(5-oxidanylnaphthalen-1-yl)oxypropyl hydrogen phosphate, ...
著者Troisi, R, Sica, F.
登録日2022-04-13
公開日2022-11-30
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献A terminal functionalization strategy reveals unusual binding abilities of anti-thrombin anticoagulant aptamers.
Mol Ther Nucleic Acids, 30, 2022
8RPH
DownloadVisualize
BU of 8rph by Molmil
JanthE from Janthinobacterium sp. HH01,ketobutyryl-ThDP
分子名称: (2~{S})-2-[3-[(4-azanyl-2-methyl-pyrimidin-5-yl)methyl]-4-methyl-5-[2-[oxidanyl(phosphonooxy)phosphoryl]oxyethyl]-1,3-thiazol-2-yl]-2-oxidanyl-butanoic acid, FLAVIN-ADENINE DINUCLEOTIDE, MAGNESIUM ION, ...
著者Lanza, L, Leogrande, C, Rabe von Pappenheim, F, Tittmann, K, Mueller, M.
登録日2024-01-16
公開日2024-06-12
最終更新日2024-08-21
実験手法X-RAY DIFFRACTION (2.96 Å)
主引用文献Identification and Characterization of Thiamine Diphosphate-Dependent Lyases with an Unusual CDG Motif.
Angew.Chem.Int.Ed.Engl., 63, 2024
8QNF
DownloadVisualize
BU of 8qnf by Molmil
Crystal structure of the Condensation domain TomBC from the Tomaymycin non-ribosomal peptide synthetase
分子名称: Condensation domain TomBC from the Tomaymycin non-ribosomal peptide synthetase, FORMIC ACID, GLYCEROL, ...
著者Karanth, M, Schmelz, S, Kirkpatrick, J, Krausze, J, Scrima, A, Carlomagno, T.
登録日2023-09-26
公開日2024-06-26
最終更新日2024-07-03
実験手法X-RAY DIFFRACTION (1.65 Å)
主引用文献The specificity of intermodular recognition in a prototypical nonribosomal peptide synthetase depends on an adaptor domain.
Sci Adv, 10, 2024
8QRX
DownloadVisualize
BU of 8qrx by Molmil
Solution NMR structure of the peptidyl carrier domain TomAPCP from the Tomaymycin non-ribosomal peptide synthetase in its substrate-loaded state
分子名称: TomAPCP substrate-loaded from the Tomaymycin non-ribosomal peptide synthetase
著者Karanth, M.N, Kirkpatrick, J.P, Carlomagno, T.
登録日2023-10-09
公開日2024-06-26
最終更新日2024-07-03
実験手法SOLUTION NMR
主引用文献The specificity of intermodular recognition in a prototypical nonribosomal peptide synthetase depends on an adaptor domain.
Sci Adv, 10, 2024
8R3Z
DownloadVisualize
BU of 8r3z by Molmil
Cryo-EM structure of the Asgard archaeal Argonaute HrAgo1 bound to a guide RNA
分子名称: HrAgo1, MAGNESIUM ION, RNA (5'-R(P*UP*GP*AP*GP*GP*U*(MG))-3')
著者Finocchio, G, Swarts, D, Jinek, M.
登録日2023-11-10
公開日2024-06-19
最終更新日2024-07-10
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献RNA-guided RNA silencing by an Asgard archaeal Argonaute.
Nat Commun, 15, 2024
6ZBW
DownloadVisualize
BU of 6zbw by Molmil
Structure of the D125N mutant of the catalytic domain of the Bacillus circulans alpha-1,6 Mannanase in complex with an alpha-1,6-alpha-manno-cyclophellitol trisaccharide inhibitor
分子名称: (1~{S},4~{S},5~{R})-6-(hydroxymethyl)cyclohexane-1,2,3,4,5-pentol, 1,2-ETHANEDIOL, Alpha-1,6-mannanase, ...
著者Davies, G.J, Offen, W.A.
登録日2020-06-09
公開日2021-04-28
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献Development of Non-Hydrolysable Oligosaccharide Activity-Based Inactivators for Endoglycanases: A Case Study on alpha-1,6 Mannanases.
Chemistry, 27, 2021
8QSX
DownloadVisualize
BU of 8qsx by Molmil
Solution NMR structure of the novel adaptor domain TomBN91 from the Tomaymycin non-ribosomal peptide synthetase
分子名称: TomBN91
著者Karanth, M.N, Kirkpatrick, J.P, Carlomagno, T.
登録日2023-10-11
公開日2024-06-26
最終更新日2024-07-03
実験手法SOLUTION NMR
主引用文献The specificity of intermodular recognition in a prototypical nonribosomal peptide synthetase depends on an adaptor domain.
Sci Adv, 10, 2024
8RKV
DownloadVisualize
BU of 8rkv by Molmil
Conformational Landscape of the Type V-K CRISPR-associated TransposonIntegration Assembly CAST V-K TnsB domain local-refinement map
分子名称: LE, MAGNESIUM ION, Non-target strand - LE, ...
著者Tenjo-Castano, F, Mesa, P, Montoya, G.
登録日2023-12-30
公開日2024-06-19
最終更新日2024-07-03
実験手法ELECTRON MICROSCOPY (3.11 Å)
主引用文献Conformational landscape of the type V-K CRISPR-associated transposon integration assembly.
Mol.Cell, 84, 2024
8QWT
DownloadVisualize
BU of 8qwt by Molmil
Ligninolytic manganese peroxidase Cst-MnP1 from Agaricales mushrooms in complex with a manganese ion
分子名称: CALCIUM ION, GLYCEROL, MAGNESIUM ION, ...
著者Santillana, E, Romero, A.
登録日2023-10-20
公開日2024-06-26
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Structure-function characterization of two enzymes from novel subfamilies of manganese peroxidases secreted by the lignocellulose-degrading Agaricales fungi Agrocybe pediades and Cyathus striatus.
Biotechnol Biofuels Bioprod, 17, 2024
8R47
DownloadVisualize
BU of 8r47 by Molmil
AL amyloid fibril from the FOR010 light chain
分子名称: lambda 3 immunoglobulin light chain fragment, residues 4-116
著者Pfeiffer, P.B, Banerjee, S, Schmidt, M, Faendrich, M.
登録日2023-11-13
公開日2024-06-26
実験手法ELECTRON MICROSCOPY (2.25 Å)
主引用文献Light chain mutations contribute to defining the fibril morphology in systemic AL amyloidosis.
Nat Commun, 15, 2024
8QOI
DownloadVisualize
BU of 8qoi by Molmil
Structure of the human 80S ribosome at 1.9 A resolution - the molecular role of chemical modifications and ions in RNA
分子名称: 18S rRNA (1740-MER), 28S rRNA (3773-MER), 40S ribosomal protein S10, ...
著者Holvec, S, Barchet, C, Frechin, L, Hazemann, I, von Loeffelholz, O, Klaholz, B.P.
登録日2023-09-29
公開日2024-06-12
最終更新日2024-06-19
実験手法ELECTRON MICROSCOPY (1.9 Å)
主引用文献The structure of the human 80S ribosome at 1.9 angstrom resolution reveals the molecular role of chemical modifications and ions in RNA.
Nat.Struct.Mol.Biol., 2024
4YDL
DownloadVisualize
BU of 4ydl by Molmil
Crystal structure of broadly and potently neutralizing antibody C38-VRC18.02 in complex with HIV-1 clade AE strain 93TH057gp120
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID, Envelope glycoprotein gp160,Envelope glycoprotein gp160, ...
著者Zhou, T, Srivatsan, S, Kwong, P.D.
登録日2015-02-22
公開日2015-06-03
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Structural Repertoire of HIV-1-Neutralizing Antibodies Targeting the CD4 Supersite in 14 Donors.
Cell, 161, 2015
6MPM
DownloadVisualize
BU of 6mpm by Molmil
Racemic M2-TM I42A crystallized from racemic detergent
分子名称: Matrix protein 2, octyl beta-D-glucopyranoside
著者Kreitler, D.F, Yao, Z, Mortenson, D.E, Forest, K.T, Gellman, S.H.
登録日2018-10-07
公開日2019-01-30
最終更新日2020-07-29
実験手法X-RAY DIFFRACTION (1.4 Å)
主引用文献A Hendecad Motif Is Preferred for Heterochiral Coiled-Coil Formation.
J. Am. Chem. Soc., 141, 2019
1BQ1
DownloadVisualize
BU of 1bq1 by Molmil
E. COLI THYMIDYLATE SYNTHASE MUTANT N177A IN COMPLEX WITH CB3717 AND 2'-DEOXYURIDINE 5'-MONOPHOSPHATE (DUMP)
分子名称: 10-PROPARGYL-5,8-DIDEAZAFOLIC ACID, 2'-DEOXYURIDINE 5'-MONOPHOSPHATE, THYMIDYLATE SYNTHASE
著者Reyes, C.L, Sage, C.R, Rutenber, E.E, Finer-Moore, J.S, Stroud, R.M.
登録日1998-08-20
公開日1999-05-18
最終更新日2021-11-03
実験手法X-RAY DIFFRACTION (2.5 Å)
主引用文献Inactivity of N229A thymidylate synthase due to water-mediated effects: isolating a late stage in methyl transfer.
J.Mol.Biol., 284, 1998

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon