PDB: 2869 件ウェブページステータス検索Chemie searchBIRD

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8UU5	Cryo-EM structure of the Listeria innocua 70S ribosome (head-swiveled) in complex with pe/E-tRNA (structure I-B) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... 著者 Seely, S.M, Basu, R.S, Gagnon, M.G. 登録日 2023-10-31 公開日 2024-02-28 最終更新日 2024-05-01 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024
8UU7	Cryo-EM structure of the Listeria innocua 70S ribosome in complex with HflXr, HPF, and E-site tRNA (structure II-B) 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 5S Ribosomal RNA, ... 著者 Seely, S.M, Basu, R.S, Gagnon, M.G. 登録日 2023-10-31 公開日 2024-02-28 最終更新日 2024-05-08 実験手法 ELECTRON MICROSCOPY (3.2 Å) 主引用文献 Mechanistic insights into the alternative ribosome recycling by HflXr. Nucleic Acids Res., 52, 2024
6YC3	Crystal structure of the light-driven sodium pump KR2 in the pentameric form, pH 8.0 分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, RETINAL, ... 著者 Kovalev, K, Gushchin, I, Gordeliy, V. 登録日 2020-03-18 公開日 2020-04-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2 Å) 主引用文献 Molecular mechanism of light-driven sodium pumping. Nat Commun, 11, 2020
6YFM	Virus-like particle of bacteriophage ESE021 分子名称: ZINC ION, coat protein 著者 Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K. 登録日 2020-03-26 公開日 2020-09-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.762 Å) 主引用文献 Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes. Sci Adv, 6, 2020
6XQE	Crystal structure of the Thermus thermophilus 70S ribosome in complex with sarecycline, UAA-mRNA, and deacylated P-site tRNA at 3.00A resolution 分子名称: 16S Ribosomal RNA, 23S Ribosomal RNA, 30S ribosomal protein S10, ... 著者 Batool, Z, Lomakin, I.B, Bunick, C.G, Polikanov, Y.S. 登録日 2020-07-09 公開日 2020-08-05 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Sarecycline interferes with tRNA accommodation and tethers mRNA to the 70S ribosome. Proc.Natl.Acad.Sci.USA, 117, 2020
8UEJ	ssRNA phage PhiCb5 virion 分子名称: CALCIUM ION, Coat protein, Maturation protein 著者 Wang, Y, Zhang, J. 登録日 2023-10-01 公開日 2024-05-15 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structural mechanisms of Tad pilus assembly and its interaction with an RNA virus. Sci Adv, 10, 2024
4U3N	Crystal structure of CCA trinucleotide bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 40S ribosomal protein S0-A, ... 著者 Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M. 登録日 2014-07-22 公開日 2014-10-22 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.2 Å) 主引用文献 Structural basis for the inhibition of the eukaryotic ribosome. Nature, 513, 2014
4U4Z	Crystal structure of Phyllanthoside bound to the yeast 80S ribosome 分子名称: 18S ribosomal RNA, 25S ribosomal RNA, 3-O-acetyl-2-O-(3-O-acetyl-6-deoxy-beta-D-glucopyranosyl)-6-deoxy-1-O-{[(2R,2'S,3a'R,4''S,5''R,6'S,7a'S)-5''-methyl-4''-{[(2E)-3-phenylprop-2-enoyl]oxy}decahydrodispiro[oxirane-2,3'-[1]benzofuran-2',2''-pyran]-6'-yl]carbonyl}-beta-D-glucopyranose, ... 著者 Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M. 登録日 2014-07-24 公開日 2014-10-22 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3.1 Å) 主引用文献 Structural basis for the inhibition of the eukaryotic ribosome. Nature, 513, 2014
6XYT	Crystal structure of the O-state of the light-driven sodium pump KR2 in the pentameric form, pH 8.0 分子名称: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate, EICOSANE, GLYCEROL, ... 著者 Kovalev, K, Gushchin, I, Gordeliy, V. 登録日 2020-01-31 公開日 2020-02-12 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.1 Å) 主引用文献 Molecular mechanism of light-driven sodium pumping. Nat Commun, 11, 2020
8W1F	Crystal Structure of DPS-like protein PA4880 from Pseudomonas aeruginosa (dodecamer, Mg bound) 分子名称: DPS-LIKE PROTEIN, FE (II) ION, MAGNESIUM ION, ... 著者 Lovell, S, Liu, L, Seibold, S, Battaile, K.P, Rivera, M. 登録日 2024-02-15 公開日 2024-05-29 最終更新日 2024-06-19 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Pseudomonas aeruginosa gene PA4880 encodes a Dps-like protein with a Dps fold, bacterioferritin-type ferroxidase centers, and endonuclease activity. Front Mol Biosci, 11, 2024
4UB8	Native structure of photosystem II (dataset-2) by a femtosecond X-ray laser 分子名称: 1,2-DI-O-ACYL-3-O-[6-DEOXY-6-SULFO-ALPHA-D-GLUCOPYRANOSYL]-SN-GLYCEROL, 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE, 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE, ... 著者 Suga, M, Akita, F, Hirata, K, Ueno, G, Murakami, H, Nakajima, Y, Shimizu, T, Yamashita, K, Yamamoto, M, Ago, H, Shen, J.R. 登録日 2014-08-12 公開日 2014-12-03 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (1.95 Å) 主引用文献 Native structure of photosystem II at 1.95 angstrom resolution viewed by femtosecond X-ray pulses. Nature, 517, 2015
6Y6A	Structure of Finch Polyomavirus VP1 in complex with 2-O-Methyl-5-N-acetyl-alpha-D-neuraminic acid 分子名称: CHLORIDE ION, Capsid protein VP1, MAGNESIUM ION, ... 著者 Stroh, L.J, Rustmeier, N.H, Stehle, T. 登録日 2020-02-26 公開日 2020-07-08 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 Structural Basis and Evolution of Glycan Receptor Specificities within the Polyomavirus Family. Mbio, 11, 2020
6Y6X	Tetracenomycin X bound to the human ribosome 分子名称: 28S ribosomal RNA, 5.8S ribosomal RNA, 5S ribosomal RNA, ... 著者 Buschauer, R, Cheng, J, Berninghausen, O, Beckmann, R, Wilson, D.N. 登録日 2020-02-27 公開日 2020-07-08 最終更新日 2023-11-08 実験手法 ELECTRON MICROSCOPY (2.8 Å) 主引用文献 Tetracenomycin X inhibits translation by binding within the ribosomal exit tunnel. Nat.Chem.Biol., 16, 2020
4UG0	STRUCTURE OF THE HUMAN 80S RIBOSOME 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S RIBOSOMAL PROTEIN, ... 著者 Khatter, H, Myasnikov, A.G, Natchiar, S.K, Klaholz, B.P. 登録日 2015-03-20 公開日 2015-06-10 最終更新日 2019-12-18 実験手法 ELECTRON MICROSCOPY (3.6 Å) 主引用文献 Structure of the human 80S ribosome NATURE, 520, 2015
6YFB	Virus-like particle of bacteriophage AVE016 分子名称: coat protein 著者 Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K. 登録日 2020-03-26 公開日 2020-09-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.59 Å) 主引用文献 Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes. Sci Adv, 6, 2020
4U4U	Crystal structure of Lycorine bound to the yeast 80S ribosome 分子名称: (1S,2S,12bS,12cS)-2,4,5,7,12b,12c-hexahydro-1H-[1,3]dioxolo[4,5-j]pyrrolo[3,2,1-de]phenanthridine-1,2-diol, 18S ribosomal RNA, 25S ribosomal RNA, ... 著者 Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M. 登録日 2014-07-24 公開日 2014-10-22 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis for the inhibition of the eukaryotic ribosome. Nature, 513, 2014
8SCB	Terminating ribosome with SRI-41315 分子名称: (2S,4aS)-2-cyclobutyl-10-methyl-3-phenyl-2,10-dihydropyrimido[4,5-b]quinoline-4,5(3H,4aH)-dione, 18S_rRNA, 28S_rRNA, ... 著者 Yip, M.C.J, Coelho, J.P.L, Oltion, K, Tauton, J, Shao, S. 登録日 2023-04-05 公開日 2023-12-27 実験手法 ELECTRON MICROSCOPY (2.5 Å) 主引用文献 Structure and consequences of eRF1 glued to the ribosomal decoding center To Be Published
6YFE	Virus-like particle of Beihai levi-like virus 19 分子名称: CALCIUM ION, coat protein 著者 Rumnieks, J, Kalnins, G, Sisovs, M, Lieknina, I, Tars, K. 登録日 2020-03-26 公開日 2020-09-02 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (3.794 Å) 主引用文献 Three-dimensional structure of 22 uncultured ssRNA bacteriophages: Flexibility of the coat protein fold and variations in particle shapes. Sci Adv, 6, 2020
6Y57	Structure of human ribosome in hybrid-PRE state 分子名称: 18S ribosomal RNA, 28S ribosomal RNA, 40S ribosomal protein S10, ... 著者 Bhaskar, V, Schenk, A.D, Cavadini, S, von Loeffelholz, O, Natchiar, S.K, Klaholz, B.P, Chao, J.A. 登録日 2020-02-25 公開日 2020-04-15 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (3.5 Å) 主引用文献 Dynamics of uS19 C-Terminal Tail during the Translation Elongation Cycle in Human Ribosomes. Cell Rep, 31, 2020
6YHS	Acinetobacter baumannii ribosome-amikacin complex - 50S subunit 分子名称: 23S ribosomal RNA, 50S ribosomal protein L13, 50S ribosomal protein L14, ... 著者 Nicholson, D, Edwards, T.A, O'Neill, A.J, Ranson, N.A. 登録日 2020-03-30 公開日 2020-09-16 最終更新日 2024-05-22 実験手法 ELECTRON MICROSCOPY (2.7 Å) 主引用文献 Structure of the 70S Ribosome from the Human Pathogen Acinetobacter baumannii in Complex with Clinically Relevant Antibiotics. Structure, 28, 2020
4UBZ	Crystal structure of a prion peptide 分子名称: SODIUM ION, prion peptide 著者 Yu, L, Lee, S.-J, Yee, V. 登録日 2014-08-13 公開日 2015-05-27 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (1.001 Å) 主引用文献 Crystal Structures of Polymorphic Prion Protein beta 1 Peptides Reveal Variable Steric Zipper Conformations. Biochemistry, 54, 2015
6YDP	55S mammalian mitochondrial ribosome with mtEFG1 and P site fMet-tRNAMet (POST) 分子名称: 12S rRNA, 28S ribosomal protein S16, mitochondrial, ... 著者 Kummer, E, Ban, N. 登録日 2020-03-20 公開日 2020-07-15 最終更新日 2020-08-12 実験手法 ELECTRON MICROSCOPY (3 Å) 主引用文献 Structural insights into mammalian mitochondrial translation elongation catalyzed by mtEFG1. Embo J., 39, 2020
4V4G	Crystal structure of five 70s ribosomes from Escherichia Coli in complex with protein Y. 分子名称: 16S ribosomal RNA, 23S RIBOSOMAL RNA, 30S ribosomal protein S10, ... 著者 Vila-Sanjurjo, A, Schuwirth, B.S, Hau, C.W, Cate, J.H. 登録日 2004-10-06 公開日 2014-07-09 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (11.5 Å) 主引用文献 Structural basis for the control of translation initiation during stress. Nat.Struct.Mol.Biol., 11, 2004
4U3M	Crystal structure of Anisomycin bound to the yeast 80S ribosome 分子名称: 18S rRNA, 25s rRNA, 40S ribosomal protein S0-A, ... 著者 Garreau de Loubresse, N, Prokhorova, I, Yusupova, G, Yusupov, M. 登録日 2014-07-22 公開日 2014-10-22 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Structural basis for the inhibition of the eukaryotic ribosome. Nature, 513, 2014
4TUT	Structure of a Prion peptide 分子名称: Prion peptide: GLY-GLY-TYR-MET-LEU-GLY 著者 Yu, L, Lee, S.-J, Yee, V. 登録日 2014-06-24 公開日 2015-05-27 最終更新日 2023-12-27 実験手法 X-RAY DIFFRACTION (0.9 Å) 主引用文献 Crystal Structures of Polymorphic Prion Protein beta 1 Peptides Reveal Variable Steric Zipper Conformations. Biochemistry, 54, 2015

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