PDB: 45817 件ウェブページステータス検索Chemie searchBIRD

---

8SVD	Structure of M. baixiangningiae DarR-DNA complex reveals novel dimer-of-dimers DNA binding 分子名称: DNA (5'-D(P*TP*AP*GP*AP*TP*AP*CP*TP*CP*CP*GP*GP*AP*GP*TP*AP*TP*CP*TP*A)-3'), DarR 著者 Schumacher, M.A. 登録日 2023-05-16 公開日 2023-11-01 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (3.49 Å) 主引用文献 Structures of the DarR transcription regulator reveal unique modes of second messenger and DNA binding. Nat Commun, 14, 2023
5HLT	Crystal structure of pyrene- and phenanthrene-modified DNA in complex with the BpuJ1 endonuclease binding domain 分子名称: DNA (5'-D(*GP*YPY*TP*AP*CP*CP*CP*GP*TP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*AP*CP*GP*GP*GP*TP*AP*YPY*C)-3'), Restriction endonuclease R.BpuJI 著者 Probst, M, Aeschimann, W, Chau, T.-T.-H, Langenegger, S.M, Stocker, A, Haener, R. 登録日 2016-01-15 公開日 2016-08-17 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (2.672 Å) 主引用文献 Structural insight into DNA-assembled oligochromophores: crystallographic analysis of pyrene- and phenanthrene-modified DNA in complex with BpuJI endonuclease. Nucleic Acids Res., 44, 2016
2XZU	CRYSTAL STRUCTURE OF A COMPLEX BETWEEN THE WILD-TYPE LACTOCOCCUS LACTIS FPG (MUTM) AND AN OXIDIZED PYRIMIDINE CONTAINING DNA AT 310K 分子名称: 5'-D(*CP*TP*CP*TP*TP*TP*VETP*TP*TP*TP*CP*TP*CP*G)-3', 5'-D(GP*CP*GP*AP*GP*AP*AP*AP*CP*AP*AP*AP*G*A)-3', FORMAMIDOPYRIMIDINE-DNA GLYCOSYLASE, ... 著者 Lebihan, Y.V, Izquierdo, M.A, Coste, F, Culard, F, Gehrke, T.H, Essalhi, K, Aller, P, Carrel, T, Castaing, B. 登録日 2010-11-29 公開日 2011-10-05 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (1.82 Å) 主引用文献 5-Hydroxy-5-Methylhydantoin DNA Lesion, a Molecular Trap for DNA Glycosylases Nucleic Acids Res., 39, 2011
5HNH	Crystal structure of pyrene- and phenanthrene-modified DNA in complex with the BpuJ1 endonuclease binding domain 分子名称: DNA (5'-D(*GP*(YPY)P*AP*CP*CP*CP*GP*TP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*AP*CP*GP*GP*GP*T*(YPY)*(YPY)*C)-3'), Restriction endonuclease R.BpuJI 著者 Probst, M, Aeschimann, W, Chau, T.-T.-H, Langenegger, S.M, Stocker, A, Haener, R. 登録日 2016-01-18 公開日 2016-08-17 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.876 Å) 主引用文献 Structural insight into DNA-assembled oligochromophores: crystallographic analysis of pyrene- and phenanthrene-modified DNA in complex with BpuJI endonuclease. Nucleic Acids Res., 44, 2016
5NL0	Crystal structure of a 197-bp palindromic 601L nucleosome in complex with linker histone H1 分子名称: DNA (197-MER), Histone H1.0-B, Histone H2A type 1, ... 著者 Garcia-Saez, I, Petosa, C, Dimitrov, S. 登録日 2017-04-03 公開日 2017-05-17 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (5.4 Å) 主引用文献 Structure and Dynamics of a 197 bp Nucleosome in Complex with Linker Histone H1. Mol. Cell, 66, 2017
7UTN	IscB and wRNA bound to Target DNA 分子名称: DNA non-target strand, DNA target strand, IscB, ... 著者 Schuler, G.A, Hu, C, Ke, A. 登録日 2022-04-27 公開日 2022-06-15 最終更新日 2024-02-14 実験手法 ELECTRON MICROSCOPY (2.74 Å) 主引用文献 Structural basis for RNA-guided DNA cleavage by IscB-omega RNA and mechanistic comparison with Cas9. Science, 376, 2022
5ZYT	Crystal structure of human MGME1 with 3' overhang double strand DNA3 分子名称: DNA (5'-D(P*CP*TP*TP*CP*TP*TP*CP*C)-3'), Mitochondrial genome maintenance exonuclease 1 著者 Yang, C, Gan, J. 登録日 2018-05-28 公開日 2018-09-19 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (2.702 Å) 主引用文献 Structural insights into DNA degradation by human mitochondrial nuclease MGME1 Nucleic Acids Res., 46, 2018
6D95	Ternary RsAgo Complex with Guide RNA Paired and Target DNA containing A8-A8' Non-Canonical Pair 分子名称: DNA 24-Mer, MAGNESIUM ION, RNA (5'-R(P*UP*UP*AP*CP*UP*GP*CP*AP*CP*AP*GP*GP*UP*GP*AP*CP*GP*A)-3'), ... 著者 Liu, Y, Esyunina, D, Olovnikov, I, Teplova, M, Patel, D.J. 登録日 2018-04-27 公開日 2018-08-08 最終更新日 2024-03-13 実験手法 X-RAY DIFFRACTION (1.85 Å) 主引用文献 Accommodation of Helical Imperfections in Rhodobacter sphaeroides Argonaute Ternary Complexes with Guide RNA and Target DNA. Cell Rep, 24, 2018
6A8R	Crystal structure of DUX4 HD2 domain associated with ERG DNA binding site 分子名称: DNA (5'-D(P*AP*AP*TP*CP*TP*CP*AP*TP*CP*A)-3'), DNA (5'-D(P*TP*GP*AP*TP*GP*AP*GP*AP*TP*T)-3'), Double homeobox protein 4 著者 Dong, X, Zhang, H, Cheng, N, Meng, G. 登録日 2018-07-10 公開日 2018-10-24 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.6 Å) 主引用文献 DUX4HD2-DNAERGstructure reveals new insight into DUX4-Responsive-Element. Leukemia, 33, 2019
5HNF	Crystal structure of pyrene- and phenanthrene-modified DNA in complex with the BpuJ1 endonuclease binding domain 分子名称: DNA (5'-D(*GP*(YPE)P*AP*CP*CP*CP*GP*TP*GP*GP*A)-3'), DNA (5'-D(*TP*CP*CP*AP*CP*GP*GP*GP*TP*(YPF)P*C)-3'), Restriction endonuclease R.BpuJI 著者 Probst, M, Aeschimann, W, Chau, T.-T.-H, Langenegger, S.M, Stocker, A, Haener, R. 登録日 2016-01-18 公開日 2016-08-17 最終更新日 2024-01-10 実験手法 X-RAY DIFFRACTION (1.546 Å) 主引用文献 Structural insight into DNA-assembled oligochromophores: crystallographic analysis of pyrene- and phenanthrene-modified DNA in complex with BpuJI endonuclease. Nucleic Acids Res., 44, 2016
5ZYU	The crystal structure of humanMGME1 with single strand DNA2 分子名称: DNA (5'-D(P*CP*AP*AP*CP*AP*AP*CP*A)-3'), GLYCEROL, Mitochondrial genome maintenance exonuclease 1 著者 Yang, C, Gan, J. 登録日 2018-05-28 公開日 2018-09-19 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (1.752 Å) 主引用文献 Structural insights into DNA degradation by human mitochondrial nuclease MGME1 Nucleic Acids Res., 46, 2018
4KMF	Crystal structure of Zalpha domain from Carassius auratus PKZ in complex with Z-DNA 分子名称: DNA (5'-D(*TP*CP*GP*CP*GP*CP*G)-3'), Interferon-inducible and double-stranded-dependent eIF-2kinase, MANGANESE (II) ION 著者 Kim, D, Kim, K.K. 登録日 2013-05-08 公開日 2013-07-03 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (1.7 Å) 主引用文献 Distinct Z-DNA binding mode of a PKR-like protein kinase containing a Z-DNA binding domain (PKZ). Nucleic Acids Res., 42, 2014
4Q2J	A novel structure-based mechanism for DNA-binding of SATB1 分子名称: DNA-binding protein SATB1 著者 Wang, Z, Long, J, Yang, X, Shen, Y. 登録日 2014-04-08 公開日 2015-03-11 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.603 Å) 主引用文献 Crystal structure of the ubiquitin-like domain-CUT repeat-like tandem of special AT-rich sequence binding protein 1 (SATB1) reveals a coordinating DNA-binding mechanism. J.Biol.Chem., 289, 2014
7UDI	Full-length dimer of DNA-Damage Response Protein C from Deinococcus radiodurans 分子名称: DNA damage response protein DdrC, SULFATE ION 著者 Szabla, R, Li, M.C, Junop, M.S. 登録日 2022-03-19 公開日 2023-02-22 最終更新日 2024-07-31 実験手法 X-RAY DIFFRACTION (2.24 Å) 主引用文献 DdrC, a unique DNA repair factor from D. radiodurans, senses and stabilizes DNA breaks through a novel lesion-recognition mechanism. Nucleic Acids Res., 2024
3BNA	REVERSIBLE BENDING AND HELIX GEOMETRY IN A B-DNA DODECAMER: CGCGAATTBRCGCG 分子名称: DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*(CBR)P*GP*CP*G)-3') 著者 Kopka, M.L, Fratini, A.V, Dickerson, R.E. 登録日 1982-02-16 公開日 1982-04-15 最終更新日 2024-02-21 実験手法 X-RAY DIFFRACTION (3 Å) 主引用文献 Reversible bending and helix geometry in a B-DNA dodecamer: CGCGAATTBrCGCG. J.Biol.Chem., 257, 1982
1BC8	STRUCTURES OF SAP-1 BOUND TO DNA SEQUENCES FROM THE E74 AND C-FOS PROMOTERS PROVIDE INSIGHTS INTO HOW ETS PROTEINS DISCRIMINATE BETWEEN RELATED DNA TARGETS 分子名称: DNA (5'-D(*AP*AP*CP*TP*TP*CP*CP*GP*GP*T)-3'), DNA (5'-D(*TP*AP*CP*CP*GP*GP*AP*AP*GP*T)-3'), PROTEIN (SAP-1 ETS DOMAIN), ... 著者 Mo, Y, Vaessen, B, Johnston, K, Marmorstein, R. 登録日 1998-05-05 公開日 1998-12-01 最終更新日 2024-02-07 実験手法 X-RAY DIFFRACTION (1.93 Å) 主引用文献 Structures of SAP-1 bound to DNA targets from the E74 and c-fos promoters: insights into DNA sequence discrimination by Ets proteins. Mol.Cell, 2, 1998
329D	EFFECT OF CYTOSINE METHYLATION ON DNA-DNA RECOGNITION AT CPG STEPS 分子名称: DNA (5'-D(*AP*CP*CP*GP*CP*(5CM)P*GP*GP*CP*GP*CP*C)-3'), DNA (5'-D(*GP*GP*CP*GP*CP*(5CM)P*GP*GP*CP*GP*GP*T)-3') 著者 Mayer-Jung, C, Moras, D, Timsit, Y. 登録日 1997-04-29 公開日 1997-04-30 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.7 Å) 主引用文献 Effect of cytosine methylation on DNA-DNA recognition at CpG steps. J.Mol.Biol., 270, 1997
1JRE	DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, CADMIUM ION, DNA PROTECTION DURING STARVATION PROTEIN 著者 Luo, J, Liu, D, White, M.A, Fox, R.O. 登録日 2001-08-13 公開日 2003-06-17 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.65 Å) 主引用文献 DNA Protection and Binding by E. Coli Dps Protein To be Published
1JTS	DNA PROTECTION AND BINDING BY E. COLI DPS PROTEIN 分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, DNA PROTECTION DURING STARVATION PROTEIN 著者 Luo, J, Liu, D, White, M.A, Fox, R.O. 登録日 2001-08-22 公開日 2003-06-17 最終更新日 2023-08-16 実験手法 X-RAY DIFFRACTION (2.6 Å) 主引用文献 DNA Protection and Binding by E. Coli Dps Protein To be Published
5XJZ	Structure of DNA1-Ag complex 分子名称: DNA (5'-D(*GP*CP*AP*CP*GP*CP*GP*C)-3'), SILVER ION, SPERMINE 著者 Liu, H.H, Gan, J.H. 登録日 2017-05-04 公開日 2017-12-06 最終更新日 2024-03-27 実験手法 X-RAY DIFFRACTION (0.98 Å) 主引用文献 A DNA Structure Containing AgI -Mediated G:G and C:C Base Pairs Angew. Chem. Int. Ed. Engl., 56, 2017
2VYF	Crystal Structure of the DnaC 分子名称: GOLD ION, REPLICATIVE DNA HELICASE 著者 Lo, Y.H, Tsai, K.L, Sun, Y.J, Hsiao, C.D. 登録日 2008-07-23 公開日 2008-12-30 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (3.6 Å) 主引用文献 The Crystal Structure of a Replicative Hexameric Helicase Dnac and its Complex with Single-Stranded DNA. Nucleic Acids Res., 37, 2009
4KB1	Crystal structure of RNase T in complex with a bluge DNA (two nucleotide insertion CT ) 分子名称: Bulge DNA, MAGNESIUM ION, Ribonuclease T 著者 Hsiao, Y.-Y, Yuan, H.S. 登録日 2013-04-23 公開日 2014-03-05 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (1.8 Å) 主引用文献 Structural insights into DNA repair by RNase T--an exonuclease processing 3' end of structured DNA in repair pathways. Plos Biol., 12, 2014
5CP2	Human DNA polymerase lambda L431A mutant- Apoenzyme and complex with 6 paired DNA 分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), DNA polymerase lambda, ... 著者 Liu, M.S, Tsai, M.D. 登録日 2015-07-21 公開日 2016-02-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.36 Å) 主引用文献 Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
5CJ7	Human DNA polymerase lambda L431A mutant- MgdTTP binary and complex with 6 paired DNA 分子名称: DNA (5'-D(*CP*AP*GP*TP*AP*C)-3'), DNA (5'-D(P*GP*TP*AP*CP*TP*G)-3'), DNA polymerase lambda, ... 著者 Liu, M.S, Tsai, M.D. 登録日 2015-07-14 公開日 2016-02-24 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.901 Å) 主引用文献 Structural Mechanism for the Fidelity Modulation of DNA Polymerase lambda J.Am.Chem.Soc., 138, 2016
8SLN	Crystal structure of Deinococcus geothermalis PprI complexed with ssDNA 分子名称: DNA (29-MER), MANGANESE (II) ION, Zn dependent hydrolase fused to HTH domain, ... 著者 Zhao, Y, Lu, H. 登録日 2023-04-23 公開日 2024-03-13 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 The Deinococcus protease PprI senses DNA damage by directly interacting with single-stranded DNA. Nat Commun, 15, 2024

<69707172737475767778798081828384>