Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

7SPM
DownloadVisualize
BU of 7spm by Molmil
Replication Initiator Protein REPE54 and cognate DNA sequence with terminal three prime phosphates chemically crosslinked (30 mg/mL EDC, 12 hours, 2 doses).
分子名称: DNA (5'-D(*CP*CP*TP*GP*TP*GP*AP*CP*AP*AP*AP*TP*TP*GP*CP*CP*CP*TP*CP*AP*GP*A)-3'), DNA (5'-D(*CP*TP*GP*AP*GP*GP*GP*CP*AP*AP*TP*TP*TP*GP*TP*CP*AP*CP*AP*GP*GP*A)-3'), MAGNESIUM ION, ...
著者Ward, A.R, Snow, C.D.
登録日2021-11-02
公開日2021-11-10
最終更新日2023-11-01
実験手法X-RAY DIFFRACTION (3.28 Å)
主引用文献Stabilizing DNA-Protein Co-Crystals via Intra-Crystal Chemical Ligation of the DNA
Crystals, 12, 2022
6OTN
DownloadVisualize
BU of 6otn by Molmil
Crystal Structure of an N-terminal Fragment of Cancer Associated Tropomyosin 3.1 (Tpm3.1)
分子名称: SULFATE ION, Tropomyosin alpha-3 chain
著者Rynkiewicz, M.J, Ghosh, A, Lehman, W.J, Janco, M, Gunning, P.W.
登録日2019-05-03
公開日2019-08-14
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular integration of the anti-tropomyosin compound ATM-3507 into the coiled coil overlap region of the cancer-associated Tpm3.1.
Sci Rep, 9, 2019
4E6K
DownloadVisualize
BU of 4e6k by Molmil
2.0 A resolution structure of Pseudomonas aeruginosa bacterioferritin (BfrB) in complex with bacterioferritin associated ferredoxin (Bfd)
分子名称: Bacterioferritin, FE2/S2 (INORGANIC) CLUSTER, PHOSPHATE ION, ...
著者Lovell, S, Battaile, K.P, Yao, H, Wang, Y, Kumar, R, Ruvinsky, A, Vasker, I, Rivera, M.
登録日2012-03-15
公開日2012-08-01
最終更新日2023-09-13
実験手法X-RAY DIFFRACTION (2 Å)
主引用文献The Structure of the BfrB-Bfd Complex Reveals Protein-Protein Interactions Enabling Iron Release from Bacterioferritin.
J.Am.Chem.Soc., 134, 2012
4XEP
DownloadVisualize
BU of 4xep by Molmil
Crystal Structure of F222 form of E112A/H234A Mutant of Stationary Phase Survival Protein (SurE) from Salmonella typhimurium
分子名称: 1,2-ETHANEDIOL, 5'/3'-nucleotidase SurE, MAGNESIUM ION, ...
著者Mathiharan, Y.K, Murthy, M.R.N.
登録日2014-12-24
公開日2015-09-09
最終更新日2023-11-08
実験手法X-RAY DIFFRACTION (1.5 Å)
主引用文献Insights into stabilizing interactions in the distorted domain-swapped dimer of Salmonella typhimurium survival protein.
Acta Crystallogr.,Sect.D, 71, 2015
1NCF
DownloadVisualize
BU of 1ncf by Molmil
A NEW PARADIGM FOR TUMOR NECROSIS FACTOR SIGNALLING
分子名称: TUMOR NECROSIS FACTOR RECEPTOR
著者Naismith, J.H, Sprang, S.R.
登録日1994-10-12
公開日1995-12-07
最終更新日2024-06-05
実験手法X-RAY DIFFRACTION (2.25 Å)
主引用文献Crystallographic evidence for dimerization of unliganded tumor necrosis factor receptor.
J.Biol.Chem., 270, 1995
7N9L
DownloadVisualize
BU of 7n9l by Molmil
KirBac3.1 C71S C262S
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Inward rectifier potassium channel Kirbac3.1, POTASSIUM ION, ...
著者Gulbis, J.M, Black, K.A.
登録日2021-06-18
公開日2021-12-29
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Ion currents through Kir potassium channels are gated by anionic lipids.
Nat Commun, 13, 2022
7N9K
DownloadVisualize
BU of 7n9k by Molmil
KirBac3.1 L124M mutant
分子名称: 1,2-DIOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE, Inward rectifier potassium channel Kirbac3.1, N-OCTANE, ...
著者Black, T.A, Gulbis, J.M.
登録日2021-06-18
公開日2021-12-29
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.72 Å)
主引用文献Ion currents through Kir potassium channels are gated by anionic lipids.
Nat Commun, 13, 2022
3RGN
DownloadVisualize
BU of 3rgn by Molmil
Crystal structure of spin-labeled BtuB W371R1
分子名称: (HYDROXYETHYLOXY)TRI(ETHYLOXY)OCTANE, MAGNESIUM ION, S-[(1-oxyl-2,2,5,5-tetramethyl-2,5-dihydro-1H-pyrrol-3-yl)methyl] methanesulfonothioate, ...
著者Freed, D.M, Horanyi, P.S, Wiener, M.C, Cafiso, D.S.
登録日2011-04-08
公開日2011-10-26
最終更新日2017-11-08
実験手法X-RAY DIFFRACTION (2.3 Å)
主引用文献Molecular Origin of Electron Paramagnetic Resonance Line Shapes on β-Barrel Membrane Proteins: The Local Solvation Environment Modulates Spin-Label Configuration
Biochemistry, 50, 2011
6O60
DownloadVisualize
BU of 6o60 by Molmil
Crystal structure of GGTase3-FBXL2-SKP1 complex
分子名称: F-box/LRR-repeat protein 2, Geranylgeranyl transferase type-2 subunit beta, Protein prenyltransferase alpha subunit repeat-containing protein 1, ...
著者Wang, H, Zheng, N.
登録日2019-03-04
公開日2019-06-26
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.503 Å)
主引用文献GGTase3 is a newly identified geranylgeranyltransferase targeting a ubiquitin ligase.
Nat.Struct.Mol.Biol., 26, 2019
6XIV
DownloadVisualize
BU of 6xiv by Molmil
SeMet-Rns, in complex with potential inhibitor
分子名称: (2S)-2-hydroxybutanedioic acid, DECANOIC ACID, Regulatory protein Rns
著者Midgett, C.R, Kull, F.J.
登録日2020-06-22
公開日2021-06-30
最終更新日2022-02-02
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献Structure of the master regulator Rns reveals an inhibitor of enterotoxigenic Escherichia coli virulence regulons.
Sci Rep, 11, 2021
7NF8
DownloadVisualize
BU of 7nf8 by Molmil
Ovine (b0,+AT-rBAT)2 hetero-tetramer, asymmetric unit, rigid-body fitted
分子名称: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Lee, Y, Kuehlbrandt, W.
登録日2021-02-05
公開日2022-01-19
最終更新日2022-06-08
実験手法ELECTRON MICROSCOPY (2.83 Å)
主引用文献Ca 2+ -mediated higher-order assembly of heterodimers in amino acid transport system b 0,+ biogenesis and cystinuria.
Nat Commun, 13, 2022
8DKN
DownloadVisualize
BU of 8dkn by Molmil
PPARg bound to T0070907 and Co-R peptide
分子名称: 2-chloro-5-nitro-N-(pyridin-4-yl)benzamide, 3-CYCLOHEXYL-1-PROPYLSULFONIC ACID, Nuclear receptor corepressor 1 peptide, ...
著者Larsen, N.A, Tsai, J.
登録日2022-07-05
公開日2022-09-07
最終更新日2023-10-25
実験手法X-RAY DIFFRACTION (1.95 Å)
主引用文献Biochemical and structural basis for the pharmacological inhibition of nuclear hormone receptor PPAR gamma by inverse agonists.
J.Biol.Chem., 298, 2022
6O76
DownloadVisualize
BU of 6o76 by Molmil
Human cytosolic Histidyl-tRNA synthetase (HisRS) with WHEP domain
分子名称: CHLORIDE ION, Histidine--tRNA ligase, cytoplasmic
著者Kuhle, B, Yang, X.L.
登録日2019-03-07
公開日2019-09-11
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.787 Å)
主引用文献CMT disease severity correlates with mutation-induced open conformation of histidyl-tRNA synthetase, not aminoacylation loss, in patient cells.
Proc.Natl.Acad.Sci.USA, 116, 2019
7NF7
DownloadVisualize
BU of 7nf7 by Molmil
Ovine rBAT ectodomain homodimer, asymmetric unit
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, CALCIUM ION, ...
著者Lee, Y, Kuehlbrandt, W.
登録日2021-02-05
公開日2022-01-19
最終更新日2022-06-01
実験手法ELECTRON MICROSCOPY (2.68 Å)
主引用文献Ca 2+ -mediated higher-order assembly of heterodimers in amino acid transport system b 0,+ biogenesis and cystinuria.
Nat Commun, 13, 2022
7NDT
DownloadVisualize
BU of 7ndt by Molmil
UL40:01 TCR in complex with HLA-E with a non-natural amino acid
分子名称: Beta-2-microglobulin, HLA class I histocompatibility antigen, alpha chain E, ...
著者Pengelly, R.J, Robinson, R.A.
登録日2021-02-02
公開日2022-01-26
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.999 Å)
主引用文献Structure-guided stabilization of pathogen-derived peptide-HLA-E complexes using non-natural amino acids conserves native TCR recognition.
Eur.J.Immunol., 52, 2022
6OOG
DownloadVisualize
BU of 6oog by Molmil
Crystal structure of triosephosphate isomerase from Taenia Solium in complex with 2PG
分子名称: 2-PHOSPHOGLYCOLIC ACID, SODIUM ION, Triosephosphate isomerase
著者Jimenez-Sandoval, P, Brieba, L.
登録日2019-04-23
公開日2020-01-08
最終更新日2023-10-11
実験手法X-RAY DIFFRACTION (2.02 Å)
主引用文献Crystal structures of Triosephosphate Isomerases from Taenia solium and Schistosoma mansoni provide insights for vaccine rationale and drug design against helminth parasites.
Plos Negl Trop Dis, 14, 2020
8JMJ
DownloadVisualize
BU of 8jmj by Molmil
Structure of Helicobacter pylori Soj-DNA-Spo0J complex
分子名称: ADENOSINE-5'-TRIPHOSPHATE, DNA (5'-D(P*AP*GP*GP*GP*TP*GP*TP*TP*CP*CP*AP*CP*GP*TP*GP*AP*AP*AP*CP*AP*GP*GP*GP*A)-3'), DNA (5'-D(P*TP*CP*CP*CP*TP*GP*TP*TP*TP*CP*AP*CP*GP*TP*GP*GP*AP*AP*CP*AP*CP*CP*CP*T)-3'), ...
著者Wu, C.T, Chu, C.H, Sun, Y.J.
登録日2023-06-05
公開日2024-05-29
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.57 Å)
主引用文献Insights into the molecular mechanism of ParABS system in chromosome partition by HpParA and HpParB.
Nucleic Acids Res., 2024
7NF6
DownloadVisualize
BU of 7nf6 by Molmil
Ovine b0,+AT-rBAT heterodimer
分子名称: 1-palmitoyl-2-oleoyl-sn-glycero-3-phosphocholine, 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, ...
著者Lee, Y, Kuehlbrandt, W.
登録日2021-02-05
公開日2022-01-19
最終更新日2022-06-01
実験手法ELECTRON MICROSCOPY (3.05 Å)
主引用文献Ca 2+ -mediated higher-order assembly of heterodimers in amino acid transport system b 0,+ biogenesis and cystinuria.
Nat Commun, 13, 2022
6XOS
DownloadVisualize
BU of 6xos by Molmil
CryoEM structure of human presequence protease in partial open state 1
分子名称: Presequence protease, mitochondrial
著者Liang, W.G, Zhao, M, Tang, W.
登録日2020-07-07
公開日2021-07-07
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.7 Å)
主引用文献Structural basis for the mechanisms of human presequence protease conformational switch and substrate recognition.
Nat Commun, 13, 2022
7NDU
DownloadVisualize
BU of 7ndu by Molmil
Gag:02 TCR in complex with HLA-E featuring a non-natural amino acid
分子名称: Beta-2-microglobulin, Gag6V(276-284 H4C), HLA class I histocompatibility antigen, ...
著者Pengelly, R.J, Robinson, R.A.
登録日2021-02-02
公開日2022-01-26
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.9 Å)
主引用文献Structure-guided stabilization of pathogen-derived peptide-HLA-E complexes using non-natural amino acids conserves native TCR recognition.
Eur.J.Immunol., 52, 2022
4XNW
DownloadVisualize
BU of 4xnw by Molmil
The human P2Y1 receptor in complex with MRS2500
分子名称: P2Y purinoceptor 1,Rubredoxin,P2Y purinoceptor 1, ZINC ION, [(1R,2S,4S,5S)-4-[2-iodo-6-(methylamino)-9H-purin-9-yl]-2-(phosphonooxy)bicyclo[3.1.0]hex-1-yl]methyl dihydrogen phosphate
著者Zhang, D, Gao, Z, Jacobson, K, Han, G.W, Stevens, R, Zhao, Q, Wu, B, GPCR Network (GPCR)
登録日2015-01-16
公開日2015-04-01
最終更新日2020-02-05
実験手法X-RAY DIFFRACTION (2.7 Å)
主引用文献Two disparate ligand-binding sites in the human P2Y1 receptor
Nature, 520, 2015
6XOU
DownloadVisualize
BU of 6xou by Molmil
CryoEM structure of human presequence protease in open state
分子名称: Presequence protease, mitochondrial
著者Liang, W.G, Zhao, M, Tang, W.
登録日2020-07-07
公開日2021-07-07
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (4 Å)
主引用文献Structural basis for the mechanisms of human presequence protease conformational switch and substrate recognition.
Nat Commun, 13, 2022
7NDQ
DownloadVisualize
BU of 7ndq by Molmil
Gag:02 TCR in complex with HLA-E.
分子名称: Beta-2-microglobulin, Gag6V, HLA class I histocompatibility antigen, ...
著者Pengelly, R.J, Robinson, R.A.
登録日2021-02-02
公開日2022-01-26
最終更新日2024-01-31
実験手法X-RAY DIFFRACTION (2.551 Å)
主引用文献Structure-guided stabilization of pathogen-derived peptide-HLA-E complexes using non-natural amino acids conserves native TCR recognition.
Eur.J.Immunol., 52, 2022
6XOV
DownloadVisualize
BU of 6xov by Molmil
CryoEM structure of human presequence protease in partial closed state 1
分子名称: Amyloid-beta precursor protein, Presequence protease, mitochondrial
著者Liang, W.G, Zhao, M, Tang, W.
登録日2020-07-07
公開日2021-07-07
最終更新日2024-05-15
実験手法ELECTRON MICROSCOPY (3.3 Å)
主引用文献Structural basis for the mechanisms of human presequence protease conformational switch and substrate recognition.
Nat Commun, 13, 2022
7T9J
DownloadVisualize
BU of 7t9j by Molmil
Cryo-EM structure of the SARS-CoV-2 Omicron spike protein
分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose, Spike glycoprotein
著者Zhu, X, Mannar, D, Saville, J.W, Srivastava, S.S, Berezuk, A.M, Tuttle, K.S, Subramaniam, S.
登録日2021-12-19
公開日2021-12-29
最終更新日2022-05-18
実験手法ELECTRON MICROSCOPY (2.79 Å)
主引用文献SARS-CoV-2 Omicron variant: Antibody evasion and cryo-EM structure of spike protein-ACE2 complex.
Science, 375, 2022

222624

件を2024-07-17に公開中

PDB statisticsPDBj update infoContact PDBjnumon