Loading
PDBj
メニューPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

6FKT
DownloadVisualize
BU of 6fkt by Molmil
Crystal structure of a dye-decolorizing peroxidase R232A variant from Klebsiella pneumoniae (KpDyP)
分子名称: Iron-dependent peroxidase, MAGNESIUM ION, PROTOPORPHYRIN IX CONTAINING FE
著者Pfanzagl, V, Hofbauer, S, Mlynek, G.
登録日2018-01-24
公開日2018-08-08
最終更新日2024-01-17
実験手法X-RAY DIFFRACTION (1.86002779 Å)
主引用文献Roles of distal aspartate and arginine of B-class dye-decolorizing peroxidase in heterolytic hydrogen peroxide cleavage.
J. Biol. Chem., 293, 2018
6W4P
DownloadVisualize
BU of 6w4p by Molmil
CaMKII alpha-30 Cryo-EM reconstruction - Class B
分子名称: Calcium/calmodulin-dependent protein kinase type II subunit alpha
著者Chao, L.H, Stratton, M.M.
登録日2020-03-11
公開日2020-07-15
最終更新日2024-03-06
実験手法ELECTRON MICROSCOPY (6.6 Å)
主引用文献Heterogeneity in human hippocampal CaMKII transcripts reveals allosteric hub-dependent regulation.
Sci.Signal., 13, 2020
8IEJ
DownloadVisualize
BU of 8iej by Molmil
RNF20-RNF40/hRad6A-Ub/nucleosome complex
分子名称: DNA (147-MER), E3 ubiquitin-protein ligase BRE1A, E3 ubiquitin-protein ligase BRE1B, ...
著者Ai, H, Deng, Z, Sun, M, Du, Y, Pan, M, Liu, L.
登録日2023-02-15
公開日2023-09-06
最終更新日2023-09-20
実験手法ELECTRON MICROSCOPY (3.12 Å)
主引用文献Mechanistic insights into nucleosomal H2B monoubiquitylation mediated by yeast Bre1-Rad6 and its human homolog RNF20/RNF40-hRAD6A.
Mol.Cell, 83, 2023
6SU0
DownloadVisualize
BU of 6su0 by Molmil
Crystal structure of dimethylated RSLex in complex with cucurbit[7]uril
分子名称: Fucose-binding lectin protein, SODIUM ION, cucurbit[7]uril, ...
著者Guagnini, F, Engilberge, S, Crowley, P.B.
登録日2019-09-12
公開日2020-02-19
最終更新日2024-01-24
実験手法X-RAY DIFFRACTION (1.98 Å)
主引用文献Engineered assembly of a protein-cucurbituril biohybrid.
Chem.Commun.(Camb.), 56, 2020
7RIN
DownloadVisualize
BU of 7rin by Molmil
Apo PTP1B by Native S-SAD at Room Temperature
分子名称: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL, Tyrosine-protein phosphatase non-receptor type 1
著者Greisman, J.B, Dalton, K.M, Hekstra, D.R.
登録日2021-07-20
公開日2021-07-28
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (1.85 Å)
主引用文献Native SAD phasing at room temperature.
Acta Crystallogr D Struct Biol, 78, 2022
6VVO
DownloadVisualize
BU of 6vvo by Molmil
Structure of the human clamp loader (Replication Factor C, RFC) bound to the sliding clamp (Proliferating Cell Nuclear Antigen, PCNA)
分子名称: ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PHOSPHOTHIOPHOSPHORIC ACID-ADENYLATE ESTER, ...
著者Gaubitz, C, Liu, X, Stone, N.P, Kelch, B.A.
登録日2020-02-18
公開日2020-02-26
最終更新日2020-03-25
実験手法ELECTRON MICROSCOPY (3.4 Å)
主引用文献Structure of the human clamp loader bound to the sliding clamp: a further twist on AAA+ mechanism
Biorxiv, 2020
5UD2
DownloadVisualize
BU of 5ud2 by Molmil
Class II fructose-1,6-bisphosphate aldolase H180Q variant of Helicobacter pylori with DHAP
分子名称: 1,3-DIHYDROXYACETONEPHOSPHATE, Fructose-bisphosphate aldolase, SODIUM ION, ...
著者Jacques, B, Sygusch, J.
登録日2016-12-23
公開日2018-04-11
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.775 Å)
主引用文献Active site remodeling during the catalytic cycle in metal-dependent fructose-1,6-bisphosphate aldolases.
J. Biol. Chem., 293, 2018
6J9V
DownloadVisualize
BU of 6j9v by Molmil
Crystal structure of Trypanosoma brucei gambiense glycerol kinase complex with ADP.
分子名称: ADENOSINE-5'-DIPHOSPHATE, GLYCEROL, Glycerol kinase
著者Balogun, E.O, Chishima, T, Ichinose, M, Inaoka, D.K, Kido, Y, Ibrahim, B, de Koning, H, McKerrow, J.H, Watanabe, Y, Nozaki, T, Michels, P.A.M, Harada, S, Kita, K, Shiba, T.
登録日2019-01-24
公開日2020-01-29
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Reaction mechanism of the reverse reaction of African human trypanosomes glycerol kinase.
To Be Published
5UFX
DownloadVisualize
BU of 5ufx by Molmil
Estrogen Receptor Alpha Ligand Binding Domain in Complex with OP1074
分子名称: (2S)-3-(4-hydroxyphenyl)-4-methyl-2-(4-{2-[(3R)-3-methylpyrrolidin-1-yl]ethoxy}phenyl)-2H-1-benzopyran-7-ol, Estrogen receptor
著者Fanning, S.W, Hodges-Gallagher, L, Myles, D.C, Sun, R, Fowler, C.E, Green, B.D, Harmon, C.L, Greene, G.L, Kushner, P.J.
登録日2017-01-06
公開日2018-01-10
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.5503 Å)
主引用文献Specific stereochemistry of OP-1074 disrupts estrogen receptor alpha helix 12 and confers pure antiestrogenic activity.
Nat Commun, 9, 2018
8T3N
DownloadVisualize
BU of 8t3n by Molmil
Solution NMR structure of synthetic peptide AMPCry10Aa_5 rational designed from Cry10Aa bacterial protein
分子名称: Pesticidal crystal protein Cry10Aa peptide
著者Barra, J.B, Freitas, C.D.P, Rios, T.B, Maximiano, M.R, Fernandes, F.C, Amorim, G.C, Porto, W.F, Grossi-de-Sa, M.F, Franco, O.F, Liao, L.M.
登録日2023-06-07
公開日2024-06-12
最終更新日2024-07-24
実験手法SOLUTION NMR
主引用文献Anti-Staphy Peptides Rationally Designed from Cry10Aa Bacterial Protein.
Acs Omega, 9, 2024
6BIA
DownloadVisualize
BU of 6bia by Molmil
Crystal structure of Ps i-CgsB
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CITRIC ACID, ...
著者Hettle, A.G, Boraston, A.B.
登録日2017-11-01
公開日2018-03-14
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.8 Å)
主引用文献The Molecular Basis of Polysaccharide Sulfatase Activity and a Nomenclature for Catalytic Subsites in this Class of Enzyme.
Structure, 26, 2018
8TSO
DownloadVisualize
BU of 8tso by Molmil
KDL bound, nucleotide-free MsbA in open, outward-facing conformation
分子名称: (2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[(2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-carboxy-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(3~{R})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-5-[[(3~{R})-3-oxidanyltetradecanoyl]amino]-4-[(3~{R})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{R})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]-5-oxidanyl-oxan-4-yl]oxy-4,5-bis(oxidanyl)oxane-2-carboxylic acid, ATP-binding transport protein MsbA, PENTAETHYLENE GLYCOL MONODECYL ETHER
著者Yang, B, Zhang, T, Lyu, J, Laganowsky, A.D, Zhao, M.
登録日2023-08-11
公開日2024-06-19
実験手法ELECTRON MICROSCOPY (2.68 Å)
主引用文献Native mass spectrometry captures snapshots of the MsbA transport cycle
To Be Published
6BTE
DownloadVisualize
BU of 6bte by Molmil
DNA Polymerase Beta I260Q Binary Complex
分子名称: CHLORIDE ION, DNA Downstream Strand, DNA Primer Strand, ...
著者Eckenroth, B.E, Doublie, S.
登録日2017-12-06
公開日2018-09-26
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献I260Q DNA polymerase beta highlights precatalytic conformational rearrangements critical for fidelity.
Nucleic Acids Res., 46, 2018
4R4J
DownloadVisualize
BU of 4r4j by Molmil
Crystal structure of complex sp_ASADH with 3-carboxypropyl-phthalic acid and Nicotinamide Adenine dinucleotide phosphate
分子名称: 1,2-ETHANEDIOL, 3-(3-carboxypropyl)benzene-1,2-dicarboxylic acid, Aspartate-semialdehyde dehydrogenase, ...
著者Pavlovsky, A.G, Thangavelu, B, Bhansali, P, Viola, R.E.
登録日2014-08-19
公開日2014-12-10
最終更新日2023-09-20
実験手法X-RAY DIFFRACTION (1.51 Å)
主引用文献A cautionary tale of structure-guided inhibitor development against an essential enzyme in the aspartate-biosynthetic pathway.
Acta Crystallogr.,Sect.D, 70, 2014
7RBQ
DownloadVisualize
BU of 7rbq by Molmil
Co-crystal structure of human PRMT9 in complex with MT556 inhibitor
分子名称: 1,2-ETHANEDIOL, 7-[5-S-(4-{[(4-ethylpyridin-3-yl)methyl]amino}butyl)-5-thio-beta-D-ribofuranosyl]-7H-pyrrolo[2,3-d]pyrimidin-4-amine, Protein arginine N-methyltransferase 9, ...
著者Zeng, H, Dong, A, Hutchinson, A, Seitova, A, Li, Y, Gao, Y.D, Schneider, S, Siliphaivanh, P, Sloman, D, Nicholson, B, Fischer, C, Hicks, J, Brown, P.J, Arrowsmith, C.H, Edwards, A.M, Halabelian, L, Structural Genomics Consortium (SGC)
登録日2021-07-06
公開日2021-08-11
最終更新日2024-05-22
実験手法X-RAY DIFFRACTION (2.2 Å)
主引用文献Co-crystal structure of human PRMT9 in complex with MT556 inhibitor
To Be Published
6W3U
DownloadVisualize
BU of 6w3u by Molmil
APE1 exonuclease substrate complex R237C
分子名称: 1,2-ETHANEDIOL, CALCIUM ION, CHLORIDE ION, ...
著者Freudenthal, B.D, Whitaker, A.M.
登録日2020-03-09
公開日2020-06-10
最終更新日2023-10-18
実験手法X-RAY DIFFRACTION (2.4 Å)
主引用文献Molecular and structural characterization of disease-associated APE1 polymorphisms.
DNA Repair (Amst.), 91-92, 2020
6BU6
DownloadVisualize
BU of 6bu6 by Molmil
Crystal Structure of the Human vaccinia-related kinase bound to a bis-difluorophenol-aminopyridine inhibitor
分子名称: 4,4'-(2-aminopyridine-3,5-diyl)bis(2,6-difluorophenol), CHLORIDE ION, GLYCEROL, ...
著者Counago, R.M, dos Reis, C.V, de Souza, G.P, Santiago, A.S, Azevedo, A, Guimaraes, C, Mascarello, A, Gama, F, Ferreira, M, Massirer, K.B, Arruda, P, Edwards, A.M, Elkins, J.M, Structural Genomics Consortium (SGC)
登録日2017-12-08
公開日2017-12-20
最終更新日2023-10-04
実験手法X-RAY DIFFRACTION (1.8 Å)
主引用文献Crystal Structure of the Human vaccinia-related kinase bound to a bis-difluorophenol-aminopyridine inhibitor
To Be Published
6JIF
DownloadVisualize
BU of 6jif by Molmil
Crystal Structures of Branched-Chain Aminotransferase from Pseudomonas sp. UW4
分子名称: Branched-chain-amino-acid aminotransferase, PYRIDOXAL-5'-PHOSPHATE
著者Zheng, X, Guo, L, Li, D.F, Wu, B.
登録日2019-02-21
公開日2020-01-01
最終更新日2023-11-22
実験手法X-RAY DIFFRACTION (1.7 Å)
主引用文献Biochemical and structural characterization of a highly active branched-chain amino acid aminotransferase from Pseudomonas sp. for efficient biosynthesis of chiral amino acids.
Appl.Microbiol.Biotechnol., 103, 2019
4R82
DownloadVisualize
BU of 4r82 by Molmil
Streptomyces globisporus C-1027 NADH:FAD oxidoreductase SgcE6 in complex with NAD and FAD fragments
分子名称: ACETATE ION, CALCIUM ION, CHLORIDE ION, ...
著者Tan, K, Bigelow, L, Clancy, S, Babnigg, G, Bingman, C.A, Yennamalli, R, Lohman, J.R, Ma, M, Shen, B, Phillips Jr, G.N, Joachimiak, A, Midwest Center for Structural Genomics (MCSG), Enzyme Discovery for Natural Product Biosynthesis (NatPro)
登録日2014-08-29
公開日2014-10-01
最終更新日2016-11-02
実験手法X-RAY DIFFRACTION (1.659 Å)
主引用文献Crystal Structures of SgcE6 and SgcC, the Two-Component Monooxygenase That Catalyzes Hydroxylation of a Carrier Protein-Tethered Substrate during the Biosynthesis of the Enediyne Antitumor Antibiotic C-1027 in Streptomyces globisporus.
Biochemistry, 55, 2016
6W72
DownloadVisualize
BU of 6w72 by Molmil
BlsA photo-activated state
分子名称: BLUF domain-containing protein, FLAVIN MONONUCLEOTIDE
著者Chitrakar, I, French, J.B.
登録日2020-03-18
公開日2020-10-07
最終更新日2024-03-06
実験手法X-RAY DIFFRACTION (1.76 Å)
主引用文献Structural Basis for the Regulation of Biofilm Formation and Iron Uptake in A. baumannii by the Blue-Light-Using Photoreceptor, BlsA.
Acs Infect Dis., 6, 2020
8T3H
DownloadVisualize
BU of 8t3h by Molmil
Solution NMR structure alpha-helix 3 of Cry10Aa protein
分子名称: Pesticidal crystal protein Cry10Aa peptide
著者Barra, J.B, Freitas, C.D.P, Rios, T.B, Maximiano, M.R, Fernandes, F.C, Amorim, G.C, Porto, W.F, Grossi-de-Sa, M.F, Franco, O.F, Liao, L.M.
登録日2023-06-07
公開日2024-06-12
実験手法SOLUTION NMR
主引用文献Alpha-helix 3 of Cry10Aa protein
To Be Published
8CE9
DownloadVisualize
BU of 8ce9 by Molmil
Crystal structure of human Cd11b I domain in C121 space group
分子名称: 1,2-ETHANEDIOL, Integrin alpha-M, SULFATE ION
著者Koekemoer, L, Williams, E, Ni, X, Gao, Q, Coker, J, MacLean, E.M, Wright, N.D, Marsden, B, Von Delft, F, Schwenzer, A, Midwood, K.
登録日2023-02-01
公開日2023-03-22
最終更新日2024-06-19
実験手法X-RAY DIFFRACTION (2.11 Å)
主引用文献Crystal structure of human Cd11b I domain in C121 space group
To Be Published
8ACM
DownloadVisualize
BU of 8acm by Molmil
Crystal structure of WT p38alpha
分子名称: 4-[5-(4-FLUORO-PHENYL)-2-(4-METHANESULFINYL-PHENYL)-3H-IMIDAZOL-4-YL]-PYRIDINE, MAGNESIUM ION, Mitogen-activated protein kinase 14
著者Pous, J, Baginski, B, Gonzalez, L, Macias, M.J, Nebreda, A.R.
登録日2022-07-05
公開日2023-11-29
実験手法X-RAY DIFFRACTION (2.14 Å)
主引用文献Crystal structure of WT p38alpha
Res Sq
8ACO
DownloadVisualize
BU of 8aco by Molmil
Crystal structure of WT p38alpha
分子名称: 4-[5-(4-FLUORO-PHENYL)-2-(4-METHANESULFINYL-PHENYL)-3H-IMIDAZOL-4-YL]-PYRIDINE, MAGNESIUM ION, Mitogen-activated protein kinase 14
著者Pous, J, Baginski, B, Gonzalez, L, Macias, M.J, Nebreda, A.R.
登録日2022-07-05
公開日2023-11-29
実験手法X-RAY DIFFRACTION (2.65 Å)
主引用文献Crystal structure of WT p38alpha
Res Sq
5FDR
DownloadVisualize
BU of 5fdr by Molmil
Mcl-1 complexed with small molecule inhibitor
分子名称: 5-[[6-chloranyl-3-[3-(4-chloranyl-3,5-dimethyl-phenoxy)propyl]-7-(3,5-dimethyl-1~{H}-pyrazol-4-yl)-1~{H}-indol-2-yl]carbonylsulfamoyl]furan-2-carboxylic acid, Induced myeloid leukemia cell differentiation protein Mcl-1
著者Zhao, B.
登録日2015-12-16
公開日2016-03-02
最終更新日2023-09-27
実験手法X-RAY DIFFRACTION (2.6 Å)
主引用文献Discovery of 2-Indole-acylsulfonamide Myeloid Cell Leukemia 1 (Mcl-1) Inhibitors Using Fragment-Based Methods.
J.Med.Chem., 59, 2016

224004

件を2024-08-21に公開中

PDB statisticsPDBj update infoContact PDBjnumon