4Q0J
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![BU of 4q0j by Molmil](/molmil-images/mine/4q0j) | Deinococcus radiodurans BphP photosensory module | 分子名称: | 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium-2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Bacteriophytochrome | 著者 | Burgie, E.S, Vierstra, R.D. | 登録日 | 2014-04-02 | 公開日 | 2014-07-16 | 最終更新日 | 2014-09-17 | 実験手法 | X-RAY DIFFRACTION (2.747 Å) | 主引用文献 | Crystallographic and Electron Microscopic Analyses of a Bacterial Phytochrome Reveal Local and Global Rearrangements during Photoconversion. J.Biol.Chem., 289, 2014
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6BAP
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![BU of 6bap by Molmil](/molmil-images/mine/6bap) | Stigmatella aurantiaca bacterial phytochrome PAS-GAF-PHY, T289H mutant | 分子名称: | 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Photoreceptor-histidine kinase BphP | 著者 | Schmidt, M, Stojkovic, E. | 登録日 | 2017-10-14 | 公開日 | 2018-09-19 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (2.65 Å) | 主引用文献 | Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome. IUCrJ, 5, 2018
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6BAY
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![BU of 6bay by Molmil](/molmil-images/mine/6bay) | |
4R70
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![BU of 4r70 by Molmil](/molmil-images/mine/4r70) | |
3JBQ
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![BU of 3jbq by Molmil](/molmil-images/mine/3jbq) | Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6 | 分子名称: | GafA domain of cone phosphodiesterase 6C, GafB domain of phosphodiesterase 2A, IgG1-kappa 2E8 heavy chain, ... | 著者 | Zhang, Z, He, F, Constantine, R, Baker, M.L, Baehr, W, Schmid, M.F, Wensel, T.G, Agosto, M.A. | 登録日 | 2015-09-17 | 公開日 | 2015-09-30 | 最終更新日 | 2019-12-18 | 実験手法 | ELECTRON MICROSCOPY (11 Å) | 主引用文献 | Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6. J.Biol.Chem., 290, 2015
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4R6L
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![BU of 4r6l by Molmil](/molmil-images/mine/4r6l) | Crystal structure of bacteriophytochrome RpBphP2 from photosynthetic bacterium R. palustris | 分子名称: | BILIVERDINE IX ALPHA, Bacteriophytochrome (Light-regulated signal transduction histidine kinase), PhyB1 | 著者 | Yang, X, Stojkovic, E, Ozarowski, W, Kuk, J, Davydova, E, Moffat, K. | 登録日 | 2014-08-25 | 公開日 | 2015-07-22 | 最終更新日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (3.395 Å) | 主引用文献 | Light Signaling Mechanism of Two Tandem Bacteriophytochromes. Structure, 23, 2015
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3JAB
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![BU of 3jab by Molmil](/molmil-images/mine/3jab) | Domain organization and conformational plasticity of the G protein effector, PDE6 | 分子名称: | 3-ISOBUTYL-1-METHYLXANTHINE, GafA domain of cone phosphodiesterase 6C, GafB domain of phosphodiesterase 2A, ... | 著者 | Zhang, Z, He, F, Constantine, R, Baker, M.L, Baehr, W, Schmid, M.F, Wensel, T.G, Agosto, M.A. | 登録日 | 2015-05-26 | 公開日 | 2015-06-10 | 最終更新日 | 2018-07-18 | 実験手法 | ELECTRON MICROSCOPY (11 Å) | 主引用文献 | Domain Organization and Conformational Plasticity of the G Protein Effector, PDE6. J.Biol.Chem., 290, 2015
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4S21
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![BU of 4s21 by Molmil](/molmil-images/mine/4s21) | Crystal structure of the photosensory core module of bacteriophytochrome RPA3015 from R. palustris | 分子名称: | BILIVERDINE IX ALPHA, Bacteriophytochrome (Light-regulated signal transduction histidine kinase), PhyB1 | 著者 | Yang, X, Stojkovi, E.A, Ozarowski, W.B, Moffat, K. | 登録日 | 2015-01-17 | 公開日 | 2015-07-15 | 最終更新日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (3.25 Å) | 主引用文献 | Light Signaling Mechanism of Two Tandem Bacteriophytochromes. Structure, 23, 2015
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6BAO
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![BU of 6bao by Molmil](/molmil-images/mine/6bao) | Stigmatella aurantiaca phytochrome photosensory core module, wild type | 分子名称: | 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid, Photoreceptor-histidine kinase BphP | 著者 | Schmidt, M, Stojkovic, E. | 登録日 | 2017-10-14 | 公開日 | 2018-09-19 | 最終更新日 | 2023-10-04 | 実験手法 | X-RAY DIFFRACTION (2.18 Å) | 主引用文献 | Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome. IUCrJ, 5, 2018
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3NOU
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![BU of 3nou by Molmil](/molmil-images/mine/3nou) | |
3NOP
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![BU of 3nop by Molmil](/molmil-images/mine/3nop) | |
3NOT
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3NHQ
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![BU of 3nhq by Molmil](/molmil-images/mine/3nhq) | The dark Pfr structure of the photosensory core module of P. aeruginosa Bacteriophytochrome | 分子名称: | BILIVERDINE IX ALPHA, Bacteriophytochrome | 著者 | Yang, X, Ren, Z, Kuk, J, Moffat, K. | 登録日 | 2010-06-14 | 公開日 | 2011-11-30 | 最終更新日 | 2023-09-06 | 実験手法 | X-RAY DIFFRACTION (2.55 Å) | 主引用文献 | Temperature-scan cryocrystallography reveals reaction intermediates in bacteriophytochrome. Nature, 479, 2011
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6TL4
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![BU of 6tl4 by Molmil](/molmil-images/mine/6tl4) | Photosensory module (PAS-GAF-PHY) of Glycine max phyB | 分子名称: | PHYCOCYANOBILIN, Phytochrome | 著者 | Nagano, S, Guan, K, Shenkutie, S.M, Hughes, J.E. | 登録日 | 2019-12-01 | 公開日 | 2020-05-06 | 最終更新日 | 2024-01-24 | 実験手法 | X-RAY DIFFRACTION (2.9 Å) | 主引用文献 | Structural insights into photoactivation and signalling in plant phytochromes. Nat.Plants, 6, 2020
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4LRZ
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![BU of 4lrz by Molmil](/molmil-images/mine/4lrz) | Crystal Structure of the E.coli DhaR(N)-DhaL complex | 分子名称: | ADENOSINE-5'-DIPHOSPHATE, MAGNESIUM ION, PTS-dependent dihydroxyacetone kinase operon regulatory protein, ... | 著者 | Shi, R, McDonald, L, Cygler, M, Ekiel, I. | 登録日 | 2013-07-21 | 公開日 | 2014-01-29 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.32 Å) | 主引用文献 | Coiled-Coil Helix Rotation Selects Repressing or Activating State of Transcriptional Regulator DhaR. Structure, 22, 2014
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2VEA
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4LRY
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![BU of 4lry by Molmil](/molmil-images/mine/4lry) | Crystal Structure of the E.coli DhaR(N)-DhaK(T79L) complex | 分子名称: | GLYCEROL, PTS-dependent dihydroxyacetone kinase operon regulatory protein, PTS-dependent dihydroxyacetone kinase, ... | 著者 | Shi, R, McDonald, L, Cygler, M, Ekiel, I. | 登録日 | 2013-07-21 | 公開日 | 2014-01-29 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (2.83 Å) | 主引用文献 | Coiled-Coil Helix Rotation Selects Repressing or Activating State of Transcriptional Regulator DhaR. Structure, 22, 2014
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4LRX
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![BU of 4lrx by Molmil](/molmil-images/mine/4lrx) | Crystal Structure of the E.coli DhaR(N)-DhaK complex | 分子名称: | GLYCEROL, PTS-dependent dihydroxyacetone kinase operon regulatory protein, PTS-dependent dihydroxyacetone kinase, ... | 著者 | Shi, R, McDonald, L, Cygler, M, Ekiel, I. | 登録日 | 2013-07-21 | 公開日 | 2014-01-29 | 最終更新日 | 2024-02-28 | 実験手法 | X-RAY DIFFRACTION (3.25 Å) | 主引用文献 | Coiled-Coil Helix Rotation Selects Repressing or Activating State of Transcriptional Regulator DhaR. Structure, 22, 2014
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4O0P
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![BU of 4o0p by Molmil](/molmil-images/mine/4o0p) | |
4OUR
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![BU of 4our by Molmil](/molmil-images/mine/4our) | Crystal structure of Arabidopsis thaliana phytochrome B photosensory module | 分子名称: | 3-[5-[[(3~{R},4~{R})-3-ethyl-4-methyl-5-oxidanylidene-3,4-dihydropyrrol-2-yl]methyl]-2-[[5-[(4-ethyl-3-methyl-5-oxidanylidene-pyrrol-2-yl)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1~{H}-pyrrol-2-yl]methyl]-4-methyl-1~{H}-pyrrol-3-yl]propanoic acid, GLYCEROL, Phytochrome B, ... | 著者 | Sethe Burgie, E, Bussell, A.N, Walker, J.M, Dubiel, K, Vierstra, R.D. | 登録日 | 2014-02-18 | 公開日 | 2014-07-16 | 最終更新日 | 2023-09-20 | 実験手法 | X-RAY DIFFRACTION (3.4 Å) | 主引用文献 | Crystal structure of the photosensing module from a red/far-red light-absorbing plant phytochrome. Proc.Natl.Acad.Sci.USA, 111, 2014
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4O01
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5MG1
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![BU of 5mg1 by Molmil](/molmil-images/mine/5mg1) | Structure of the photosensory module of Deinococcus phytochrome by serial femtosecond X-ray crystallography | 分子名称: | 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome | 著者 | Burgie, E.S, Fuller, F.D, Gul, S, Young, I.D, Brewster, A.S, Clinger, J, Andi, B, Stan, C, Allaire, M, Nelsen, S, Alonso-Mori, R, Phillips Jr, G.N, Sauter, N.K, Kern, J, Yachandra, V.K, Yano, J, Vierstra, R.D, Orville, A.M. | 登録日 | 2016-11-20 | 公開日 | 2017-02-22 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | Drop-on-demand sample delivery for studying biocatalysts in action at X-ray free-electron lasers. Nat. Methods, 14, 2017
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6PL0
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![BU of 6pl0 by Molmil](/molmil-images/mine/6pl0) | Crystal structure of the dark-adapted full-length bacteriophytochrome XccBphP from Xanthomonas campestris in the Pr state bound to BV chromophore | 分子名称: | BILIVERDINE IX ALPHA, Bacteriophytochrome | 著者 | Otero, L.H, Sirigu, S, Klinke, S, Goldbaum, F, Chavas, L, Rinaldi, J, Bonomi, H.R. | 登録日 | 2019-06-30 | 公開日 | 2020-12-30 | 最終更新日 | 2023-10-11 | 実験手法 | X-RAY DIFFRACTION (2.96 Å) | 主引用文献 | Structural basis for the Pr-Pfr long-range signaling mechanism of a full-length bacterial phytochrome at the atomic level. Sci Adv, 7, 2021
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6PU2
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![BU of 6pu2 by Molmil](/molmil-images/mine/6pu2) | Dark, Mutant H275T , 100K, PCM Myxobacterial Phytochrome, P2 | 分子名称: | 3-[(2Z)-2-({3-(2-carboxyethyl)-5-[(E)-(4-ethenyl-3-methyl-5-oxo-1,5-dihydro-2H-pyrrol-2-ylidene)methyl]-4-methyl-1H-pyrrol-2-yl}methylidene)-5-{(Z)-[(3E,4S)-3-ethylidene-4-methyl-5-oxopyrrolidin-2-ylidene]methyl}-4-methyl-2H-pyrrol-3-yl]propanoic acid, Photoreceptor-histidine kinase BphP | 著者 | Pandey, S, Schmidt, M, Stojkovic, E.A. | 登録日 | 2019-07-16 | 公開日 | 2019-10-09 | 最終更新日 | 2024-01-31 | 実験手法 | X-RAY DIFFRACTION (2.2 Å) | 主引用文献 | High-resolution crystal structures of a myxobacterial phytochrome at cryo and room temperatures. Struct Dyn., 6, 2019
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5NM3
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![BU of 5nm3 by Molmil](/molmil-images/mine/5nm3) | Deinococcus radiodurans BphP PAS-GAF-PHY Y263F mutant, pre-illuminated | 分子名称: | 3-[2-[(Z)-[3-(2-carboxyethyl)-5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-4-methyl-pyrrol-1-ium -2-ylidene]methyl]-5-[(Z)-[(3E)-3-ethylidene-4-methyl-5-oxidanylidene-pyrrolidin-2-ylidene]methyl]-4-methyl-1H-pyrrol-3- yl]propanoic acid, Bacteriophytochrome | 著者 | Takala, H, Westehoff, S, Ihalainen, J.A. | 登録日 | 2017-04-05 | 公開日 | 2018-04-18 | 最終更新日 | 2024-01-17 | 実験手法 | X-RAY DIFFRACTION (3.3 Å) | 主引用文献 | On the (un)coupling of the chromophore, tongue interactions, and overall conformation in a bacterial phytochrome. J. Biol. Chem., 293, 2018
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