6BAY

Stigmatella aurantiaca bacterial phytochrome P1, PAS-GAF-PHY T289H mutant, room temperature structure

Summary for 6BAY

DescriptorPhotoreceptor-histidine kinase BphP, 3-[5-[(Z)-(4-ethenyl-3-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-2-[[5-[(Z)-(3-ethenyl-4-methyl-5-oxidanylidene-pyrrol-2-ylidene)methyl]-3-(3-hydroxy-3-oxopropyl)-4-methyl-1H-pyrrol-2-yl]methyl]-4-methyl-1H-pyrrol-3-yl]propanoic acid (2 entities in total)
Functional Keywordsbacterial phytochrome, stigmatella aurantiaca, photosensory core module, pas-gaf-phy, room temperature, sacla, t28h mutant, signaling protein
Biological sourceStigmatella aurantiaca DW4/3-1
Total number of polymer chains3
Total molecular weight174398.53
Authors
Schmidt, M.,Stojkovic, E. (deposition date: 2017-10-16, release date: 2018-09-19, Last modification date: 2019-02-20)
Primary citation
Woitowich, N.C.,Halavaty, A.S.,Waltz, P.,Kupitz, C.,Valera, J.,Tracy, G.,Gallagher, K.D.,Claesson, E.,Nakane, T.,Pandey, S.,Nelson, G.,Tanaka, R.,Nango, E.,Mizohata, E.,Owada, S.,Tono, K.,Joti, Y.,Nugent, A.C.,Patel, H.,Mapara, A.,Hopkins, J.,Duong, P.,Bizhga, D.,Kovaleva, S.E.,St Peter, R.,Hernandez, C.N.,Ozarowski, W.B.,Roy-Chowdhuri, S.,Yang, J.H.,Edlund, P.,Takala, H.,Ihalainen, J.,Brayshaw, J.,Norwood, T.,Poudyal, I.,Fromme, P.,Spence, J.C.H.,Moffat, K.,Westenhoff, S.,Schmidt, M.,Stojkovic, E.A.
Structural basis for light control of cell development revealed by crystal structures of a myxobacterial phytochrome.
IUCrJ, 5:619-634, 2018
PubMed: 30224965 (PDB entries with the same primary citation)
DOI: 10.1107/S2052252518010631
MImport into Mendeley
Experimental method
X-RAY DIFFRACTION (3.15 Å)
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Structure validation

RfreeClashscoreRamachandran outliersSidechain outliersRSRZ outliers 0.28023 6.4% 3.6% 6.6%MetricValuePercentile RanksWorseBetterPercentile relative to all X-ray structuresPercentile relative to X-ray structures of similar resolution

More Asymmetric unit images

Molmil generated image of 6bay
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Molmil generated image of 6bay
rotated about x axis by 90°
Molmil generated image of 6bay
rotated about y axis by 90°

More Biological unit images

Molmil generated image of 6bay
no rotation
Molmil generated image of 6bay
rotated about x axis by 90°
Molmil generated image of 6bay
rotated about y axis by 90°
(*)In the case of coarse surface representation, the asymmetric unit is shown as red ribbon representation.
Coordinate files for Biological unit (6bay.pdb1.gz [165.83 KB])
Coordinate files for Biological unit (6bay.pdb2.gz [165.17 KB])