PDB: 316 件ウェブページステータス検索Chemie searchBIRD

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4AKK	Structure of the NasR transcription antiterminator 分子名称: 1,2-ETHANEDIOL, NITRATE REGULATORY PROTEIN 著者 Boudes, M, Lazar, N, Graille, M, Durand, D, Gaidenko, T.A, Stewart, V, van Tilbeurgh, H. 登録日 2012-02-24 公開日 2012-06-20 最終更新日 2024-05-08 実験手法 X-RAY DIFFRACTION (2.145 Å) 主引用文献 The Structure of the Nasr Transcription Antiterminator Reveals a One-Component System with a Nit Nitrate Receptor Coupled to an Antar RNA-Binding Effector. Mol.Microbiol., 85, 2012
4ONT	Ternary host recognition complex of complement factor H, C3d, and sialic acid 分子名称: Complement C3d fragment, Complement factor H, GLYCEROL, ... 著者 Blaum, B.S, Stehle, T.S. 登録日 2014-01-29 公開日 2014-11-26 最終更新日 2023-09-20 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural basis for sialic acid-mediated self-recognition by complement factor H. Nat.Chem.Biol., 11, 2015
4G3C	Crystal structure of apo murine Nf-kappaB inducing kinase (NIK) 分子名称: NF-kappa-beta-inducing kinase, SULFATE ION 著者 Hymowitz, S.G, de Leon-Boenig, G. 登録日 2012-07-13 公開日 2012-08-08 最終更新日 2024-04-03 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 The crystal structure of the catalytic domain of the NF-kappaB inducing kinase reveals a narrow but flexible active site. Structure, 20, 2012
4LDU	Crystal structure of the DNA binding domain of Arabidopsis thaliana auxin response factor 5 分子名称: Auxin response factor 5, CHLORIDE ION 著者 Boer, D.R, Freire-Rios, A, van den Berg, W.M.A, Weijers, D, Coll, M. 登録日 2013-06-25 公開日 2014-02-12 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Structural Basis for DNA Binding Specificity by the Auxin-Dependent ARF Transcription Factors. Cell(Cambridge,Mass.), 156, 2014
4MFP	The crystal structure of acyltransferase in complex with decanoyl-CoA and Tei pseudoaglycone 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, 2-amino-2-deoxy-beta-D-glucopyranose, COENZYME A, ... 著者 Lyu, S.Y, Liu, Y.C, Chang, C.Y, Huang, C.J, Li, T.L. 登録日 2013-08-28 公開日 2014-09-03 最終更新日 2023-12-06 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Multiple complexes of long aliphatic N-acyltransferases lead to synthesis of 2,6-diacylated/2-acyl-substituted glycopeptide antibiotics, effectively killing vancomycin-resistant enterococcus J.Am.Chem.Soc., 136, 2014
5BKE	Crystal structure of AAD-2 in complex with Mn(II) and N-oxalylglycine 分子名称: Alpha-ketoglutarate-dependent 2,4-dichlorophenoxyacetate dioxygenase, MANGANESE (II) ION, N-OXALYLGLYCINE, ... 著者 Chekan, J.R, Nair, S.K. 登録日 2019-06-02 公開日 2019-06-12 最終更新日 2023-09-27 実験手法 X-RAY DIFFRACTION (2.15 Å) 主引用文献 Molecular basis for enantioselective herbicide degradation imparted by aryloxyalkanoate dioxygenases in transgenic plants. Proc.Natl.Acad.Sci.USA, 116, 2019
4F9A	Human CDC7 kinase in complex with DBF4 and nucleotide 分子名称: ADENOSINE-5'-DIPHOSPHATE, Cell division cycle 7-related protein kinase, MAGNESIUM ION, ... 著者 Hughes, S, Cherepanov, P. 登録日 2012-05-18 公開日 2012-10-31 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.17 Å) 主引用文献 Crystal structure of human CDC7 kinase in complex with its activator DBF4. Nat.Struct.Mol.Biol., 19, 2012
6ZXB	Diguanylate cyclase DgcR (I-site mutant) in native state 分子名称: 1,2-ETHANEDIOL, 3'-DEOXY-GUANOSINE-5'-TRIPHOSPHATE, MAGNESIUM ION, ... 著者 Teixeira, R.D, Schirmer, T. 登録日 2020-07-29 公開日 2021-03-31 最終更新日 2024-01-31 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Activation mechanism of a small prototypic Rec-GGDEF diguanylate cyclase. Nat Commun, 12, 2021
4FA8	Multi-pronged modulation of cytokine signaling 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, Macrophage colony-stimulating factor 1, Secreted protein BARF1, ... 著者 He, X, Shim, A.H. 登録日 2012-05-21 公開日 2012-08-29 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Multipronged attenuation of macrophage-colony stimulating factor signaling by Epstein-Barr virus BARF1. Proc.Natl.Acad.Sci.USA, 109, 2012
4LCS	The crystal structure of di-Zn dihydropyrimidinase in complex with hydantoin 分子名称: Chromosome 8 SCAF14545, whole genome shotgun sequence, ZINC ION, ... 著者 Hsieh, Y.C, Chen, M.C, Hsu, C.C, Chan, S.I, Yang, Y.S. 登録日 2013-06-23 公開日 2013-09-18 最終更新日 2014-02-12 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Crystal structures of vertebrate dihydropyrimidinase and complexes from Tetraodon nigroviridis with lysine carbamylation: metal and structural requirements for post-translational modification and function. J.Biol.Chem., 288, 2013
3WD3	Serratia marcescens Chitinase B complexed with azide inhibitor 分子名称: Chitinase B, GLYCEROL, SULFATE ION, ... 著者 Hirose, T, Maita, N, Gouda, H, Koseki, J, Yamamoto, T, Sugawara, A, Nakano, H, Hirono, S, Shiomi, K, Watanabe, T, Taniguchi, H, Sharpless, K.B, Omura, S, Sunazuka, T. 登録日 2013-06-06 公開日 2013-09-18 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Observation of the controlled assembly of preclick components in the in situ click chemistry generation of a chitinase inhibitor Proc.Natl.Acad.Sci.USA, 110, 2013
3WJF	Crystal structure of mutant nitrobindin M75L/H76L/Q96C/V128W/M148L/H158L (NB9) from Arabidopsis thaliana 分子名称: UPF0678 fatty acid-binding protein-like protein At1g79260 著者 Mizohata, E, Fukumoto, K, Onoda, A, Bocola, M, Arlt, M, Inoue, T, Schwaneberg, U, Hayashi, T. 登録日 2013-10-08 公開日 2014-04-02 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 A Rhodium Complex-linked Hybrid Biocatalyst: Stereo-controlled Phenylacetylene Polymerization within an Engineered Protein Cavity CHEMCATCHEM, 2014
5VYG	Crystal structure of hFA9 EGF repeat with O-glucose trisaccharide 分子名称: CALCIUM ION, Coagulation factor IX, alpha-D-xylopyranose-(1-3)-alpha-D-xylopyranose-(1-3)-beta-D-glucopyranose 著者 Yu, H.J, Li, H.L. 登録日 2017-05-25 公開日 2017-08-09 最終更新日 2023-10-04 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 O-Glycosylation modulates the stability of epidermal growth factor-like repeats and thereby regulates Notch trafficking J. Biol. Chem., 292, 2017
6TTZ	Structure of the ClpP:ADEP4-complex from Staphylococcus aureus (open state) 分子名称: ATP-dependent Clp protease proteolytic subunit, N-[(2S)-3-(3,5-difluorophenyl)-1-[[(3S,9S,13S,15R,19S,22S)-15,19-dimethyl-2,8,12,18,21-pentaoxo-11-oxa-1,7,17,20-tetrazatetracyclo[20.4.0.03,7.013,17]hexacosan-9-yl]amino]-1-oxopropan-2-yl]heptanamide 著者 Malik, I.T, Pereira, R, Vielberg, M.-T, Mayer, C, Straetener, J, Thomy, D, Famulla, K, Castro, H.C, Sass, P, Groll, M, Broetz-Oesterheldt, H. 登録日 2019-12-30 公開日 2020-03-25 最終更新日 2024-01-24 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Functional Characterisation of ClpP Mutations Conferring Resistance to Acyldepsipeptide Antibiotics in Firmicutes. Chembiochem, 21, 2020
4I0A	structure of the mutant Catabolite gene activator protein V132A 分子名称: ADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE, Catabolite gene activator, GLYCEROL 著者 Pohl, E, Townsend, P.D, Rodgers, T, Burnell, D, McLeish, T.C.B, Wilson, M.R, Cann, M.J. 登録日 2012-11-16 公開日 2013-10-30 最終更新日 2024-02-28 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Modulation of global low-frequency motions underlies allosteric regulation: demonstration in CRP/FNR family transcription factors. Plos Biol., 11, 2013
3WD2	Serratia marcescens Chitinase B complexed with azide inhibitor 分子名称: Chitinase B, DITHIANE DIOL, GLYCEROL, ... 著者 Hirose, T, Maita, N, Gouda, H, Koseki, J, Yamamoto, T, Sugawara, A, Nakano, H, Hirono, S, Shiomi, K, Watanabe, T, Taniguchi, H, Sharpless, K.B, Omura, S, Sunazuka, T. 登録日 2013-06-06 公開日 2013-09-18 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Observation of the controlled assembly of preclick components in the in situ click chemistry generation of a chitinase inhibitor Proc.Natl.Acad.Sci.USA, 110, 2013
3WG2	Crystal structure of Agrocybe cylindracea galectin mutant (N46A) 分子名称: Galactoside-binding lectin, TRIETHYLENE GLYCOL 著者 Kuwabara, N, Hu, D, Tateno, H, Makio, H, Hirabayashi, J, Kato, R. 登録日 2013-07-25 公開日 2013-11-27 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Conformational change of a unique sequence in a fungal galectin from Agrocybe cylindracea controls glycan ligand-binding specificity. Febs Lett., 587, 2013
4AW9	Crystal structure of active legumain in complex with YVAD-CMK 分子名称: 2-acetamido-2-deoxy-beta-D-glucopyranose, ACE-TYR-VAL-ALA-ASP-CHLOROMETHYLKETONE, LEGUMAIN, ... 著者 Dall, E, Brandstetter, H. 登録日 2012-06-01 公開日 2013-06-26 最終更新日 2020-07-29 実験手法 X-RAY DIFFRACTION (2.2 Å) 主引用文献 Mechanistic and Structural Studies on Legumain Explain its Zymogenicity, Distinct Activation Pathways, and Regulation Proc.Natl.Acad.Sci.USA, 110, 2013
3VJH	Human PPAR GAMMA ligand binding domain in complex with JKPL35 分子名称: (2S)-2-[4-methoxy-3-({[4-(trifluoromethyl)benzoyl]amino}methyl)benzyl]pentanoic acid, Peroxisome proliferator-activated receptor gamma 著者 Tomioka, D, Kuwabara, N, Hashimoto, H, Sato, M, Shimizu, T. 登録日 2011-10-20 公開日 2012-08-29 最終更新日 2023-11-08 実験手法 X-RAY DIFFRACTION (2.22 Å) 主引用文献 Peroxisome proliferator-activated receptors (PPARs) have multiple binding points that accommodate ligands in various conformations: phenylpropanoic acid-type PPAR ligands bind to PPAR in different conformations, depending on the subtype. J.Med.Chem., 55, 2012
2YAL	SinR, Master Regulator of biofilm formation in Bacillus subtilis 分子名称: HTH-TYPE TRANSCRIPTIONAL REGULATOR SINR, NICKEL (II) ION 著者 Colledge, V.L, Fogg, M.J, Levdikov, V.M, Leech, A, Dodson, E.J, Wilkinson, A.J. 登録日 2011-02-23 公開日 2011-06-08 最終更新日 2023-12-20 実験手法 X-RAY DIFFRACTION (2.27 Å) 主引用文献 Structure and Organisation of Sinr, the Master Regulator of Biofilm Formation in Bacillus Subtilis. J.Mol.Biol., 411, 2011
6N4N	Crystal structure of the designed protein DNCR2/danoprevir/NS3a complex 分子名称: (2R,6S,12Z,13aS,14aR,16aS)-6-[(tert-butoxycarbonyl)amino]-14a-[(cyclopropylsulfonyl)carbamoyl]-5,16-dioxo-1,2,3,5,6,7,8 ,9,10,11,13a,14,14a,15,16,16a-hexadecahydrocyclopropa[e]pyrrolo[1,2-a][1,4]diazacyclopentadecin-2-yl 4-fluoro-2H-isoindole-2-carboxylate, NS3 protease, Rosetta-designed danoprevir/NS3a complex reader 2, ... 著者 Wang, Z, Foight, G.W, Baker, D, Maly, D.J. 登録日 2018-11-19 公開日 2019-09-11 最終更新日 2023-10-11 実験手法 X-RAY DIFFRACTION (2.29 Å) 主引用文献 Multi-input chemical control of protein dimerization for programming graded cellular responses. Nat.Biotechnol., 37, 2019
4F1P	Crystal Structure of mutant S554D for ArfGAP and ANK repeat domain of ACAP1 分子名称: Arf-GAP with coiled-coil, ANK repeat and PH domain-containing protein 1, SULFATE ION, ... 著者 Sun, F, Pang, X, Zhang, K, Ma, J, Zhou, Q. 登録日 2012-05-07 公開日 2012-07-18 最終更新日 2024-03-20 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Mechanistic insights into regulated cargo binding by ACAP1 protein J.Biol.Chem., 287, 2012
5X8W	Crystal Structure of the mutant Human ROR gamma Ligand Binding Domain. 分子名称: Nuclear receptor ROR-gamma, Nuclear receptor coactivator 1 著者 Noguchi, M, Nomura, A, Murase, K, Doi, S, Yamaguchi, K, Adachi, T. 登録日 2017-03-03 公開日 2017-06-07 最終更新日 2023-11-22 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Ternary complex of human ROR gamma ligand-binding domain, inverse agonist and SMRT peptide shows a unique mechanism of corepressor recruitment Genes Cells, 22, 2017
6HIL	X-ray structure of TEAD1(Y421H mutant) complexed with YAP(wildtype): Molecular and structural characterization of a TEAD mutation at the origin of Sveinsson's chorioretinal atrophy 分子名称: MYRISTIC ACID, Transcriptional coactivator YAP1, Transcriptional enhancer factor TEF-1 著者 Kallen, J. 登録日 2018-08-30 公開日 2019-04-03 最終更新日 2024-01-17 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Molecular and structural characterization of a TEAD mutation at the origin of Sveinsson's chorioretinal atrophy. Febs J., 286, 2019
7X6F	Outer membrane lipoprotein QseG of Escherichia coli O157:H7 分子名称: 1,2-ETHANEDIOL, ACETATE ION, CITRATE ANION, ... 著者 Matsumoto, K, Fukuda, Y, Inoue, T. 登録日 2022-03-07 公開日 2023-03-15 最終更新日 2023-11-15 実験手法 X-RAY DIFFRACTION (2.3 Å) 主引用文献 Crystal structures of QseE and QseG: elements of a three-component system from Escherichia coli. Acta Crystallogr.,Sect.F, 79, 2023

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